Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06676 and MPMX19_06677 are separated by 258 nucleotides MPMX19_06677 and MPMX19_06678 are separated by 274 nucleotides
MPMX19_06676: MPMX19_06676 - hypothetical protein, at 239,988 to 241,664
_06676
MPMX19_06677: MPMX19_06677 - hypothetical protein, at 241,923 to 242,981
_06677
MPMX19_06678: MPMX19_06678 - hypothetical protein, at 243,256 to 244,239
_06678
Position (kb) 241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 240.927 kb on + strand, within MPMX19_06676 at 240.927 kb on + strand, within MPMX19_06676 at 240.928 kb on - strand, within MPMX19_06676 at 240.928 kb on - strand, within MPMX19_06676 at 240.928 kb on - strand, within MPMX19_06676 at 240.956 kb on + strand, within MPMX19_06676 at 240.971 kb on + strand, within MPMX19_06676 at 240.971 kb on + strand, within MPMX19_06676 at 240.971 kb on + strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.972 kb on - strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.973 kb on + strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 240.974 kb on - strand, within MPMX19_06676 at 241.033 kb on + strand, within MPMX19_06676 at 241.034 kb on - strand, within MPMX19_06676 at 241.034 kb on - strand, within MPMX19_06676 at 241.034 kb on - strand, within MPMX19_06676 at 241.034 kb on - strand, within MPMX19_06676 at 241.079 kb on - strand, within MPMX19_06676 at 241.079 kb on - strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.086 kb on + strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.087 kb on - strand, within MPMX19_06676 at 241.111 kb on - strand, within MPMX19_06676 at 241.323 kb on + strand, within MPMX19_06676 at 241.323 kb on + strand, within MPMX19_06676 at 241.324 kb on - strand, within MPMX19_06676 at 241.324 kb on - strand, within MPMX19_06676 at 241.324 kb on - strand, within MPMX19_06676 at 241.381 kb on + strand, within MPMX19_06676 at 241.381 kb on + strand, within MPMX19_06676 at 241.381 kb on + strand, within MPMX19_06676 at 241.382 kb on - strand, within MPMX19_06676 at 241.382 kb on - strand, within MPMX19_06676 at 241.382 kb on - strand, within MPMX19_06676 at 241.472 kb on + strand, within MPMX19_06676 at 241.473 kb on - strand, within MPMX19_06676 at 241.504 kb on + strand at 241.504 kb on + strand at 241.504 kb on + strand at 241.504 kb on + strand at 241.504 kb on + strand at 241.504 kb on + strand at 241.505 kb on - strand at 241.505 kb on - strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.585 kb on + strand at 241.586 kb on - strand at 241.586 kb on - strand at 241.586 kb on - strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.695 kb on + strand at 241.696 kb on - strand at 241.696 kb on - strand at 241.696 kb on - strand at 241.696 kb on - strand at 241.696 kb on - strand at 241.714 kb on + strand at 241.714 kb on + strand at 241.714 kb on + strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.715 kb on - strand at 241.772 kb on - strand at 241.908 kb on + strand at 241.908 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.924 kb on + strand at 241.925 kb on - strand at 241.925 kb on - strand at 241.925 kb on - strand at 241.925 kb on - strand at 241.925 kb on - strand at 241.957 kb on + strand at 241.958 kb on - strand at 241.958 kb on - strand at 241.958 kb on - strand at 242.316 kb on - strand, within MPMX19_06677 at 242.316 kb on - strand, within MPMX19_06677 at 242.316 kb on - strand, within MPMX19_06677 at 242.666 kb on + strand, within MPMX19_06677 at 242.666 kb on + strand, within MPMX19_06677 at 242.666 kb on + strand, within MPMX19_06677 at 242.666 kb on + strand, within MPMX19_06677 at 242.667 kb on - strand, within MPMX19_06677 at 242.667 kb on - strand, within MPMX19_06677 at 242.987 kb on + strand at 242.991 kb on + strand at 242.998 kb on + strand at 242.999 kb on - strand at 243.271 kb on - strand at 243.271 kb on - strand at 243.277 kb on + strand at 243.278 kb on - strand at 243.343 kb on + strand at 243.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 240,927 + MPMX19_06676 0.56 -0.5 240,927 + MPMX19_06676 0.56 -1.9 240,928 - MPMX19_06676 0.56 -0.9 240,928 - MPMX19_06676 0.56 -1.8 240,928 - MPMX19_06676 0.56 -0.8 240,956 + MPMX19_06676 0.58 -0.2 240,971 + MPMX19_06676 0.59 -0.8 240,971 + MPMX19_06676 0.59 +0.2 240,971 + MPMX19_06676 0.59 +0.2 240,972 - MPMX19_06676 0.59 +0.2 240,972 - MPMX19_06676 0.59 +0.0 240,972 - MPMX19_06676 0.59 -0.4 240,972 - MPMX19_06676 0.59 -0.4 240,972 - MPMX19_06676 0.59 -1.2 240,972 - MPMX19_06676 0.59 -0.6 240,973 + MPMX19_06676 0.59 -2.3 240,973 + MPMX19_06676 0.59 +0.3 240,973 + MPMX19_06676 0.59 -2.2 240,973 + MPMX19_06676 0.59 -1.5 240,973 + MPMX19_06676 0.59 -1.2 240,974 - MPMX19_06676 0.59 -1.0 240,974 - MPMX19_06676 0.59 -2.5 240,974 - MPMX19_06676 0.59 -0.8 240,974 - MPMX19_06676 0.59 +0.2 240,974 - MPMX19_06676 0.59 -0.8 240,974 - MPMX19_06676 0.59 +0.2 240,974 - MPMX19_06676 0.59 +0.2 240,974 - MPMX19_06676 0.59 -0.0 240,974 - MPMX19_06676 0.59 -0.2 241,033 + MPMX19_06676 0.62 -1.8 241,034 - MPMX19_06676 0.62 -0.3 241,034 - MPMX19_06676 0.62 -2.6 241,034 - MPMX19_06676 0.62 -3.3 241,034 - MPMX19_06676 0.62 -0.2 241,079 - MPMX19_06676 0.65 -0.2 241,079 - MPMX19_06676 0.65 -0.5 241,086 + MPMX19_06676 0.65 -0.9 241,086 + MPMX19_06676 0.65 -0.6 241,086 + MPMX19_06676 0.65 -1.5 241,086 + MPMX19_06676 0.65 -1.6 241,086 + MPMX19_06676 0.65 -0.3 241,086 + MPMX19_06676 0.65 +0.0 241,086 + MPMX19_06676 0.65 -0.5 241,086 + MPMX19_06676 0.65 -0.2 241,086 + MPMX19_06676 0.65 -0.3 241,086 + MPMX19_06676 0.65 +0.0 241,086 + MPMX19_06676 0.65 -0.5 241,087 - MPMX19_06676 0.66 +0.8 241,087 - MPMX19_06676 0.66 -1.3 241,087 - MPMX19_06676 0.66 +0.5 241,087 - MPMX19_06676 0.66 -0.5 241,087 - MPMX19_06676 0.66 -0.2 241,087 - MPMX19_06676 0.66 +1.2 241,087 - MPMX19_06676 0.66 -1.5 241,087 - MPMX19_06676 0.66 +2.2 241,087 - MPMX19_06676 0.66 +0.2 241,111 - MPMX19_06676 0.67 -0.5 241,323 + MPMX19_06676 0.80 -0.4 241,323 + MPMX19_06676 0.80 -0.8 241,324 - MPMX19_06676 0.80 +0.2 241,324 - MPMX19_06676 0.80 +1.5 241,324 - MPMX19_06676 0.80 -2.2 241,381 + MPMX19_06676 0.83 -1.3 241,381 + MPMX19_06676 0.83 +0.8 241,381 + MPMX19_06676 0.83 +0.1 241,382 - MPMX19_06676 0.83 -0.4 241,382 - MPMX19_06676 0.83 +1.2 241,382 - MPMX19_06676 0.83 +0.4 241,472 + MPMX19_06676 0.88 -0.2 241,473 - MPMX19_06676 0.89 -0.9 241,504 + -1.6 241,504 + +0.4 241,504 + +0.3 241,504 + -1.0 241,504 + +0.5 241,504 + -1.8 241,505 - -2.5 241,505 - -2.5 241,585 + -1.3 241,585 + +0.4 241,585 + +0.2 241,585 + +1.8 241,585 + -2.2 241,585 + +0.2 241,585 + -1.2 241,585 + -1.0 241,585 + -0.8 241,586 - -1.5 241,586 - -1.5 241,586 - -0.2 241,695 + +0.5 241,695 + +0.8 241,695 + -0.3 241,695 + +0.1 241,695 + +0.8 241,695 + -1.2 241,695 + -0.8 241,695 + -1.0 241,695 + -1.0 241,695 + -0.2 241,695 + +0.2 241,696 - -1.2 241,696 - -1.2 241,696 - -0.8 241,696 - +0.8 241,696 - -0.5 241,714 + -0.4 241,714 + -1.5 241,714 + -0.6 241,715 - +1.6 241,715 - +0.1 241,715 - -2.5 241,715 - -0.6 241,715 - -1.0 241,715 - -0.3 241,715 - -0.0 241,715 - +1.4 241,715 - -0.2 241,715 - -1.2 241,772 - -0.2 241,908 + -0.2 241,908 + -0.5 241,924 + +0.2 241,924 + -1.5 241,924 + +0.3 241,924 + -1.2 241,924 + -1.5 241,924 + -1.2 241,924 + -1.4 241,924 + +0.8 241,925 - -1.2 241,925 - -1.2 241,925 - -0.7 241,925 - -0.7 241,925 - -1.1 241,957 + -0.6 241,958 - -1.0 241,958 - +1.2 241,958 - +0.4 242,316 - MPMX19_06677 0.37 -0.2 242,316 - MPMX19_06677 0.37 +0.8 242,316 - MPMX19_06677 0.37 -1.5 242,666 + MPMX19_06677 0.70 -1.2 242,666 + MPMX19_06677 0.70 -0.8 242,666 + MPMX19_06677 0.70 -1.5 242,666 + MPMX19_06677 0.70 -1.5 242,667 - MPMX19_06677 0.70 -0.2 242,667 - MPMX19_06677 0.70 -0.2 242,987 + +0.2 242,991 + -0.4 242,998 + -1.1 242,999 - +0.8 243,271 - -1.2 243,271 - -2.6 243,277 + -0.8 243,278 - -0.3 243,343 + -0.7 243,344 - -0.8
Or see this region's nucleotide sequence