Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06424 and MPMX19_06425 are separated by 184 nucleotides
MPMX19_06424: MPMX19_06424 - hypothetical protein, at 195,796 to 197,067
_06424
MPMX19_06425: MPMX19_06425 - hypothetical protein, at 197,252 to 197,722
_06425
Position (kb) 197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.292 kb on + strand, within MPMX19_06424 at 196.496 kb on + strand, within MPMX19_06424 at 196.576 kb on + strand, within MPMX19_06424 at 196.577 kb on - strand, within MPMX19_06424 at 196.577 kb on - strand, within MPMX19_06424 at 196.586 kb on + strand, within MPMX19_06424 at 196.587 kb on - strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.641 kb on - strand, within MPMX19_06424 at 196.641 kb on - strand, within MPMX19_06424 at 196.641 kb on - strand, within MPMX19_06424 at 196.641 kb on - strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.901 kb on + strand, within MPMX19_06424 at 196.901 kb on + strand, within MPMX19_06424 at 196.920 kb on + strand, within MPMX19_06424 at 196.921 kb on - strand, within MPMX19_06424 at 197.010 kb on - strand at 197.010 kb on - strand at 197.130 kb on + strand at 197.130 kb on + strand at 197.164 kb on + strand at 197.164 kb on + strand at 197.164 kb on + strand at 197.165 kb on - strand at 197.165 kb on - strand at 197.165 kb on - strand at 197.208 kb on + strand at 197.208 kb on + strand at 197.208 kb on + strand at 197.209 kb on - strand at 197.209 kb on - strand at 197.209 kb on - strand at 197.219 kb on + strand at 197.219 kb on + strand at 197.219 kb on + strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.793 kb on - strand at 197.793 kb on - strand at 197.793 kb on - strand at 197.826 kb on + strand at 197.826 kb on + strand at 197.827 kb on - strand at 197.841 kb on - strand at 197.841 kb on - strand at 198.003 kb on + strand at 198.003 kb on + strand at 198.003 kb on + strand at 198.003 kb on + strand at 198.004 kb on - strand at 198.004 kb on - strand at 198.113 kb on + strand at 198.113 kb on + strand at 198.114 kb on - strand at 198.114 kb on - strand at 198.114 kb on - strand at 198.114 kb on - strand at 198.179 kb on + strand at 198.179 kb on + strand at 198.179 kb on + strand at 198.179 kb on + strand at 198.180 kb on - strand at 198.180 kb on - strand at 198.304 kb on + strand at 198.305 kb on - strand at 198.305 kb on - strand at 198.436 kb on + strand at 198.436 kb on + strand at 198.436 kb on + strand at 198.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 196,292 + MPMX19_06424 0.39 -1.5 196,496 + MPMX19_06424 0.55 -1.5 196,576 + MPMX19_06424 0.61 -0.2 196,577 - MPMX19_06424 0.61 -1.5 196,577 - MPMX19_06424 0.61 -0.5 196,586 + MPMX19_06424 0.62 -2.3 196,587 - MPMX19_06424 0.62 +1.5 196,640 + MPMX19_06424 0.66 -0.8 196,640 + MPMX19_06424 0.66 -1.1 196,640 + MPMX19_06424 0.66 -2.2 196,640 + MPMX19_06424 0.66 -0.3 196,640 + MPMX19_06424 0.66 -3.0 196,640 + MPMX19_06424 0.66 -1.6 196,640 + MPMX19_06424 0.66 -0.1 196,641 - MPMX19_06424 0.66 -0.5 196,641 - MPMX19_06424 0.66 -0.7 196,641 - MPMX19_06424 0.66 -0.3 196,641 - MPMX19_06424 0.66 -1.7 196,787 + MPMX19_06424 0.78 -2.0 196,787 + MPMX19_06424 0.78 -0.9 196,787 + MPMX19_06424 0.78 -0.5 196,787 + MPMX19_06424 0.78 -0.5 196,787 + MPMX19_06424 0.78 +0.1 196,787 + MPMX19_06424 0.78 -0.6 196,787 + MPMX19_06424 0.78 -0.1 196,787 + MPMX19_06424 0.78 -0.9 196,787 + MPMX19_06424 0.78 -0.1 196,787 + MPMX19_06424 0.78 +0.4 196,787 + MPMX19_06424 0.78 +1.1 196,787 + MPMX19_06424 0.78 +0.1 196,787 + MPMX19_06424 0.78 -0.2 196,787 + MPMX19_06424 0.78 -2.5 196,787 + MPMX19_06424 0.78 -1.9 196,787 + MPMX19_06424 0.78 +1.1 196,787 + MPMX19_06424 0.78 +1.9 196,788 - MPMX19_06424 0.78 +1.7 196,788 - MPMX19_06424 0.78 -0.7 196,788 - MPMX19_06424 0.78 -0.3 196,788 - MPMX19_06424 0.78 +0.7 196,788 - MPMX19_06424 0.78 +0.1 196,788 - MPMX19_06424 0.78 -1.7 196,788 - MPMX19_06424 0.78 -0.3 196,788 - MPMX19_06424 0.78 -2.0 196,788 - MPMX19_06424 0.78 +0.9 196,901 + MPMX19_06424 0.87 -0.7 196,901 + MPMX19_06424 0.87 -0.5 196,920 + MPMX19_06424 0.88 -0.9 196,921 - MPMX19_06424 0.88 +0.8 197,010 - -1.0 197,010 - -0.3 197,130 + -0.6 197,130 + +0.0 197,164 + -0.7 197,164 + +0.1 197,164 + -0.1 197,165 - -0.1 197,165 - -0.9 197,165 - +0.4 197,208 + -1.7 197,208 + +0.5 197,208 + +0.5 197,209 - -0.4 197,209 - +0.1 197,209 - -0.0 197,219 + -0.3 197,219 + +0.9 197,219 + +0.5 197,220 - -0.5 197,220 - -1.3 197,220 - -0.9 197,220 - +0.6 197,220 - -2.3 197,220 - +0.5 197,793 - -1.2 197,793 - -1.3 197,793 - +0.1 197,826 + +0.1 197,826 + -1.0 197,827 - -2.0 197,841 - -0.8 197,841 - +0.6 198,003 + -0.3 198,003 + -0.9 198,003 + +0.1 198,003 + -0.2 198,004 - -0.5 198,004 - -1.7 198,113 + -0.6 198,113 + -0.6 198,114 - +1.9 198,114 - -1.5 198,114 - -0.7 198,114 - -0.9 198,179 + +0.5 198,179 + -0.6 198,179 + +0.1 198,179 + +0.3 198,180 - -0.5 198,180 - -0.9 198,304 + +0.9 198,305 - -0.8 198,305 - -1.5 198,436 + -1.7 198,436 + -0.5 198,436 + +0.8 198,437 - -1.2
Or see this region's nucleotide sequence