Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06367 and MPMX19_06368 are separated by 558 nucleotides MPMX19_06368 and MPMX19_06369 are separated by 130 nucleotides MPMX19_06369 and MPMX19_06370 are separated by 29 nucleotides
MPMX19_06367: MPMX19_06367 - IS1380 family transposase ISAzs25, at 134,717 to 136,057
_06367
MPMX19_06368: MPMX19_06368 - 34 kDa membrane antigen, at 136,616 to 137,116
_06368
MPMX19_06369: MPMX19_06369 - hypothetical protein, at 137,247 to 137,474
_06369
MPMX19_06370: MPMX19_06370 - hypothetical protein, at 137,504 to 138,337
_06370
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.154 kb on + strand at 136.154 kb on + strand at 136.154 kb on + strand at 136.154 kb on + strand at 136.196 kb on + strand at 136.196 kb on + strand at 136.196 kb on + strand at 136.197 kb on - strand at 136.197 kb on - strand at 136.197 kb on - strand at 136.197 kb on - strand at 136.197 kb on - strand at 136.442 kb on + strand at 136.443 kb on - strand at 136.443 kb on - strand at 136.450 kb on + strand at 136.450 kb on + strand at 136.450 kb on + strand at 136.450 kb on + strand at 136.450 kb on + strand at 136.450 kb on + strand at 136.451 kb on - strand at 136.451 kb on - strand at 136.451 kb on - strand at 136.465 kb on + strand at 136.465 kb on + strand at 136.466 kb on - strand at 136.466 kb on - strand at 136.466 kb on - strand at 136.483 kb on + strand at 136.487 kb on - strand at 136.487 kb on - strand at 136.488 kb on + strand at 136.489 kb on - strand at 136.489 kb on - strand at 136.507 kb on + strand at 136.507 kb on + strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.508 kb on - strand at 136.509 kb on + strand at 136.509 kb on + strand at 136.510 kb on - strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.578 kb on + strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.579 kb on - strand at 136.585 kb on + strand at 136.585 kb on + strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.586 kb on - strand at 136.649 kb on + strand at 136.649 kb on + strand at 136.660 kb on + strand at 136.660 kb on + strand at 136.660 kb on + strand at 136.661 kb on - strand at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.700 kb on + strand, within MPMX19_06368 at 136.701 kb on - strand, within MPMX19_06368 at 136.701 kb on - strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.779 kb on + strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.780 kb on - strand, within MPMX19_06368 at 136.847 kb on + strand, within MPMX19_06368 at 136.847 kb on + strand, within MPMX19_06368 at 136.847 kb on + strand, within MPMX19_06368 at 136.847 kb on + strand, within MPMX19_06368 at 136.848 kb on - strand, within MPMX19_06368 at 136.848 kb on - strand, within MPMX19_06368 at 136.848 kb on - strand, within MPMX19_06368 at 136.867 kb on + strand, within MPMX19_06368 at 136.867 kb on + strand, within MPMX19_06368 at 136.868 kb on - strand, within MPMX19_06368 at 136.891 kb on + strand, within MPMX19_06368 at 136.891 kb on + strand, within MPMX19_06368 at 136.892 kb on - strand, within MPMX19_06368 at 136.892 kb on - strand, within MPMX19_06368 at 136.923 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 136.959 kb on - strand, within MPMX19_06368 at 137.073 kb on - strand at 137.084 kb on + strand at 137.098 kb on + strand at 137.111 kb on + strand at 137.111 kb on + strand at 137.111 kb on + strand at 137.114 kb on + strand at 137.114 kb on + strand at 137.114 kb on + strand at 137.114 kb on + strand at 137.115 kb on - strand at 137.115 kb on - strand at 137.117 kb on + strand at 137.117 kb on + strand at 137.118 kb on - strand at 137.118 kb on - strand at 137.167 kb on + strand at 137.167 kb on + strand at 137.472 kb on + strand at 137.472 kb on + strand at 137.472 kb on + strand at 137.473 kb on - strand at 137.507 kb on + strand at 137.507 kb on + strand at 137.508 kb on - strand at 137.508 kb on - strand at 137.508 kb on - strand at 137.866 kb on + strand, within MPMX19_06370 at 137.921 kb on + strand, within MPMX19_06370 at 137.931 kb on + strand, within MPMX19_06370 at 138.004 kb on + strand, within MPMX19_06370 at 138.004 kb on + strand, within MPMX19_06370 at 138.004 kb on + strand, within MPMX19_06370 at 138.004 kb on + strand, within MPMX19_06370 at 138.005 kb on - strand, within MPMX19_06370 at 138.005 kb on - strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.008 kb on + strand, within MPMX19_06370 at 138.009 kb on - strand, within MPMX19_06370 at 138.009 kb on - strand, within MPMX19_06370 at 138.009 kb on - strand, within MPMX19_06370 at 138.009 kb on - strand, within MPMX19_06370
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 136,154 + -0.9 136,154 + -1.2 136,154 + -1.0 136,154 + -0.3 136,196 + -1.5 136,196 + -0.8 136,196 + +0.2 136,197 - -1.7 136,197 - +0.1 136,197 - +0.4 136,197 - -1.2 136,197 - +0.8 136,442 + -1.5 136,443 - -0.9 136,443 - +0.1 136,450 + -0.9 136,450 + -1.7 136,450 + -0.5 136,450 + +0.5 136,450 + -2.0 136,450 + -1.5 136,451 - +0.5 136,451 - -0.5 136,451 - -0.2 136,465 + -0.2 136,465 + +0.1 136,466 - -0.0 136,466 - -0.2 136,466 - -0.9 136,483 + +0.8 136,487 - +1.1 136,487 - -1.9 136,488 + +0.9 136,489 - -1.7 136,489 - +0.4 136,507 + +1.7 136,507 + -1.7 136,508 - +0.4 136,508 - -3.0 136,508 - -0.5 136,508 - +0.1 136,508 - +2.1 136,508 - -1.7 136,509 + -1.0 136,509 + -0.9 136,510 - -1.9 136,578 + -1.5 136,578 + +0.8 136,578 + -0.1 136,578 + -0.6 136,578 + -1.9 136,578 + -1.6 136,578 + -1.3 136,578 + -0.7 136,579 - -0.3 136,579 - -0.4 136,579 - -0.5 136,579 - +0.7 136,579 - -1.9 136,579 - -1.9 136,579 - -2.5 136,579 - -0.5 136,579 - -1.6 136,585 + +0.1 136,585 + -0.1 136,586 - +0.5 136,586 - -1.2 136,586 - -1.7 136,586 - -2.2 136,586 - -1.2 136,586 - -0.7 136,649 + -0.5 136,649 + -0.5 136,660 + -1.8 136,660 + -0.2 136,660 + -0.2 136,661 - -0.4 136,700 + MPMX19_06368 0.17 -1.5 136,700 + MPMX19_06368 0.17 -1.7 136,700 + MPMX19_06368 0.17 -2.0 136,700 + MPMX19_06368 0.17 -0.3 136,700 + MPMX19_06368 0.17 -0.4 136,700 + MPMX19_06368 0.17 -0.2 136,700 + MPMX19_06368 0.17 -0.5 136,701 - MPMX19_06368 0.17 -1.7 136,701 - MPMX19_06368 0.17 -0.9 136,779 + MPMX19_06368 0.33 -0.2 136,779 + MPMX19_06368 0.33 -1.1 136,779 + MPMX19_06368 0.33 -0.6 136,779 + MPMX19_06368 0.33 +0.5 136,779 + MPMX19_06368 0.33 -0.7 136,779 + MPMX19_06368 0.33 -0.3 136,779 + MPMX19_06368 0.33 -2.0 136,779 + MPMX19_06368 0.33 -0.7 136,779 + MPMX19_06368 0.33 -1.3 136,780 - MPMX19_06368 0.33 -1.1 136,780 - MPMX19_06368 0.33 -0.5 136,780 - MPMX19_06368 0.33 -0.3 136,780 - MPMX19_06368 0.33 -0.1 136,780 - MPMX19_06368 0.33 -0.5 136,780 - MPMX19_06368 0.33 -1.2 136,847 + MPMX19_06368 0.46 -1.3 136,847 + MPMX19_06368 0.46 +0.7 136,847 + MPMX19_06368 0.46 -0.9 136,847 + MPMX19_06368 0.46 -0.2 136,848 - MPMX19_06368 0.46 -1.3 136,848 - MPMX19_06368 0.46 -1.2 136,848 - MPMX19_06368 0.46 -1.2 136,867 + MPMX19_06368 0.50 +0.1 136,867 + MPMX19_06368 0.50 -1.1 136,868 - MPMX19_06368 0.50 -0.2 136,891 + MPMX19_06368 0.55 -1.0 136,891 + MPMX19_06368 0.55 -1.5 136,892 - MPMX19_06368 0.55 +1.1 136,892 - MPMX19_06368 0.55 -0.5 136,923 - MPMX19_06368 0.61 -0.5 136,959 - MPMX19_06368 0.68 -2.5 136,959 - MPMX19_06368 0.68 -1.2 136,959 - MPMX19_06368 0.68 -0.7 136,959 - MPMX19_06368 0.68 -1.2 136,959 - MPMX19_06368 0.68 -1.9 137,073 - -1.7 137,084 + -1.6 137,098 + -3.5 137,111 + -0.9 137,111 + +0.1 137,111 + -1.2 137,114 + +0.3 137,114 + -1.2 137,114 + -0.1 137,114 + -1.5 137,115 - -1.0 137,115 - -0.3 137,117 + -0.8 137,117 + -1.0 137,118 - -0.1 137,118 - -0.7 137,167 + +0.1 137,167 + +0.6 137,472 + -1.2 137,472 + +0.1 137,472 + +1.1 137,473 - -1.2 137,507 + +0.1 137,507 + +0.8 137,508 - -0.5 137,508 - -1.3 137,508 - +0.7 137,866 + MPMX19_06370 0.43 +1.0 137,921 + MPMX19_06370 0.50 -0.3 137,931 + MPMX19_06370 0.51 -0.2 138,004 + MPMX19_06370 0.60 -1.5 138,004 + MPMX19_06370 0.60 -1.1 138,004 + MPMX19_06370 0.60 +1.3 138,004 + MPMX19_06370 0.60 -1.6 138,005 - MPMX19_06370 0.60 -2.9 138,005 - MPMX19_06370 0.60 +0.7 138,008 + MPMX19_06370 0.60 -1.0 138,008 + MPMX19_06370 0.60 -1.2 138,008 + MPMX19_06370 0.60 -0.7 138,008 + MPMX19_06370 0.60 +0.1 138,008 + MPMX19_06370 0.60 +0.4 138,008 + MPMX19_06370 0.60 +0.5 138,008 + MPMX19_06370 0.60 -1.0 138,008 + MPMX19_06370 0.60 +0.1 138,008 + MPMX19_06370 0.60 -0.5 138,008 + MPMX19_06370 0.60 -0.9 138,008 + MPMX19_06370 0.60 +0.7 138,008 + MPMX19_06370 0.60 -0.9 138,008 + MPMX19_06370 0.60 -0.7 138,009 - MPMX19_06370 0.61 -0.9 138,009 - MPMX19_06370 0.61 -0.2 138,009 - MPMX19_06370 0.61 +0.4 138,009 - MPMX19_06370 0.61 -0.1
Or see this region's nucleotide sequence