Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06230 and MPMX19_06231 are separated by 611 nucleotides MPMX19_06231 and MPMX19_06232 are separated by 88 nucleotides
MPMX19_06230: MPMX19_06230 - hypothetical protein, at 418,002 to 418,658
_06230
MPMX19_06231: MPMX19_06231 - Ribonuclease J, at 419,270 to 420,790
_06231
MPMX19_06232: MPMX19_06232 - Pyruvate/proton symporter BtsT, at 420,879 to 422,684
_06232
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.513 kb on + strand, within MPMX19_06230 at 418.522 kb on + strand, within MPMX19_06230 at 418.613 kb on + strand at 418.614 kb on - strand at 418.662 kb on + strand at 418.662 kb on + strand at 418.679 kb on + strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.725 kb on - strand at 418.735 kb on + strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.810 kb on - strand at 418.810 kb on - strand at 418.810 kb on - strand at 418.811 kb on + strand at 418.811 kb on + strand at 418.812 kb on - strand at 418.812 kb on - strand at 418.823 kb on + strand at 418.823 kb on + strand at 418.830 kb on - strand at 418.968 kb on + strand at 418.968 kb on + strand at 418.968 kb on + strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.987 kb on - strand at 418.987 kb on - strand at 419.080 kb on - strand at 419.116 kb on + strand at 419.116 kb on + strand at 419.116 kb on + strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.635 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.681 kb on + strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 419.682 kb on - strand, within MPMX19_06231 at 420.212 kb on + strand, within MPMX19_06231 at 420.212 kb on + strand, within MPMX19_06231 at 420.212 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.530 kb on + strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.531 kb on - strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.583 kb on + strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.584 kb on - strand, within MPMX19_06231 at 420.863 kb on + strand at 420.864 kb on - strand at 421.018 kb on + strand at 421.018 kb on + strand at 421.018 kb on + strand at 421.018 kb on + strand at 421.018 kb on + strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.019 kb on - strand at 421.042 kb on + strand at 421.042 kb on + strand at 421.042 kb on + strand at 421.043 kb on - strand at 421.043 kb on - strand at 421.093 kb on + strand, within MPMX19_06232 at 421.093 kb on + strand, within MPMX19_06232 at 421.093 kb on + strand, within MPMX19_06232 at 421.094 kb on - strand, within MPMX19_06232 at 421.094 kb on - strand, within MPMX19_06232 at 421.094 kb on - strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.123 kb on + strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.124 kb on - strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.249 kb on + strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.250 kb on - strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.324 kb on + strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.325 kb on - strand, within MPMX19_06232 at 421.354 kb on + strand, within MPMX19_06232 at 421.432 kb on + strand, within MPMX19_06232 at 421.432 kb on + strand, within MPMX19_06232 at 421.432 kb on + strand, within MPMX19_06232 at 421.432 kb on + strand, within MPMX19_06232 at 421.433 kb on - strand, within MPMX19_06232 at 421.433 kb on - strand, within MPMX19_06232 at 421.433 kb on - strand, within MPMX19_06232 at 421.520 kb on - strand, within MPMX19_06232 at 421.520 kb on - strand, within MPMX19_06232 at 421.615 kb on + strand, within MPMX19_06232 at 421.615 kb on + strand, within MPMX19_06232 at 421.616 kb on - strand, within MPMX19_06232 at 421.616 kb on - strand, within MPMX19_06232 at 421.616 kb on - strand, within MPMX19_06232 at 421.616 kb on - strand, within MPMX19_06232
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 418,281 - MPMX19_06230 0.42 +0.4 418,281 - MPMX19_06230 0.42 -1.1 418,281 - MPMX19_06230 0.42 -0.1 418,513 + MPMX19_06230 0.78 +0.3 418,522 + MPMX19_06230 0.79 -0.1 418,613 + -0.5 418,614 - -1.9 418,662 + -0.4 418,662 + -0.7 418,679 + -2.1 418,680 - -0.7 418,680 - +0.1 418,680 - -0.3 418,680 - -0.7 418,680 - -1.1 418,725 - -0.3 418,735 + -0.4 418,736 - -0.5 418,736 - -1.1 418,736 - -0.5 418,736 - -0.9 418,809 + -1.5 418,809 + -2.3 418,809 + +1.3 418,809 + -0.9 418,810 - -1.1 418,810 - +0.5 418,810 - +0.4 418,811 + +1.9 418,811 + -0.5 418,812 - +0.4 418,812 - +0.5 418,823 + +0.6 418,823 + -0.7 418,830 - +0.4 418,968 + +0.2 418,968 + -0.5 418,968 + -0.4 418,969 - -1.1 418,969 - -0.4 418,969 - +0.5 418,969 - -1.7 418,969 - -2.1 418,969 - -1.7 418,986 + -1.2 418,986 + +0.5 418,986 + -0.5 418,986 + -0.4 418,987 - -0.1 418,987 - +0.1 419,080 - -1.5 419,116 + +1.9 419,116 + -1.3 419,116 + +0.9 419,117 - +0.5 419,117 - -0.2 419,117 - -1.8 419,117 - +0.5 419,117 - +0.5 419,117 - -0.5 419,117 - +0.3 419,117 - -0.5 419,247 + -1.9 419,247 + -0.5 419,247 + +1.9 419,247 + -0.5 419,258 + -0.5 419,258 + -0.6 419,258 + +0.3 419,258 + -0.7 419,258 + -0.6 419,259 - -0.1 419,259 - -1.0 419,259 - -0.7 419,259 - -1.9 419,259 - -0.9 419,477 + MPMX19_06231 0.14 -0.7 419,477 + MPMX19_06231 0.14 -0.4 419,477 + MPMX19_06231 0.14 +0.1 419,477 + MPMX19_06231 0.14 -0.5 419,477 + MPMX19_06231 0.14 -0.3 419,477 + MPMX19_06231 0.14 -0.5 419,477 + MPMX19_06231 0.14 -0.6 419,478 - MPMX19_06231 0.14 -2.8 419,478 - MPMX19_06231 0.14 -0.9 419,478 - MPMX19_06231 0.14 -1.0 419,635 + MPMX19_06231 0.24 -0.7 419,681 + MPMX19_06231 0.27 +0.3 419,681 + MPMX19_06231 0.27 +0.5 419,681 + MPMX19_06231 0.27 -0.1 419,681 + MPMX19_06231 0.27 +0.5 419,681 + MPMX19_06231 0.27 +0.9 419,681 + MPMX19_06231 0.27 -1.0 419,682 - MPMX19_06231 0.27 -1.7 419,682 - MPMX19_06231 0.27 -0.1 419,682 - MPMX19_06231 0.27 +0.1 419,682 - MPMX19_06231 0.27 +1.0 419,682 - MPMX19_06231 0.27 -0.4 419,682 - MPMX19_06231 0.27 -1.5 419,682 - MPMX19_06231 0.27 -0.1 420,212 + MPMX19_06231 0.62 +0.9 420,212 + MPMX19_06231 0.62 -1.5 420,212 + MPMX19_06231 0.62 -0.1 420,530 + MPMX19_06231 0.83 -2.7 420,530 + MPMX19_06231 0.83 -0.8 420,530 + MPMX19_06231 0.83 -0.1 420,530 + MPMX19_06231 0.83 -0.7 420,530 + MPMX19_06231 0.83 +0.4 420,530 + MPMX19_06231 0.83 -1.6 420,530 + MPMX19_06231 0.83 -0.4 420,531 - MPMX19_06231 0.83 -0.6 420,531 - MPMX19_06231 0.83 -0.4 420,531 - MPMX19_06231 0.83 +0.1 420,531 - MPMX19_06231 0.83 -1.5 420,531 - MPMX19_06231 0.83 -0.3 420,531 - MPMX19_06231 0.83 +0.0 420,531 - MPMX19_06231 0.83 -0.1 420,531 - MPMX19_06231 0.83 -1.3 420,583 + MPMX19_06231 0.86 -0.9 420,583 + MPMX19_06231 0.86 -1.1 420,583 + MPMX19_06231 0.86 +2.9 420,583 + MPMX19_06231 0.86 -0.1 420,583 + MPMX19_06231 0.86 -0.5 420,583 + MPMX19_06231 0.86 +0.5 420,583 + MPMX19_06231 0.86 -0.1 420,583 + MPMX19_06231 0.86 +1.9 420,583 + MPMX19_06231 0.86 +0.9 420,584 - MPMX19_06231 0.86 -0.7 420,584 - MPMX19_06231 0.86 +0.2 420,584 - MPMX19_06231 0.86 +0.3 420,584 - MPMX19_06231 0.86 +0.9 420,584 - MPMX19_06231 0.86 -0.5 420,584 - MPMX19_06231 0.86 +0.0 420,584 - MPMX19_06231 0.86 -0.1 420,584 - MPMX19_06231 0.86 -1.1 420,584 - MPMX19_06231 0.86 -0.5 420,863 + -0.1 420,864 - +0.1 421,018 + -1.9 421,018 + -0.6 421,018 + -0.7 421,018 + -0.7 421,018 + -0.1 421,019 - -0.1 421,019 - -0.0 421,019 - +1.3 421,019 - +0.5 421,019 - -0.7 421,019 - -1.5 421,019 - -0.1 421,042 + -1.7 421,042 + -1.3 421,042 + +1.3 421,043 - -0.9 421,043 - +1.0 421,093 + MPMX19_06232 0.12 -0.9 421,093 + MPMX19_06232 0.12 -0.5 421,093 + MPMX19_06232 0.12 -0.5 421,094 - MPMX19_06232 0.12 -1.8 421,094 - MPMX19_06232 0.12 +1.2 421,094 - MPMX19_06232 0.12 -0.9 421,123 + MPMX19_06232 0.14 -1.9 421,123 + MPMX19_06232 0.14 +1.3 421,123 + MPMX19_06232 0.14 -0.1 421,123 + MPMX19_06232 0.14 -1.1 421,123 + MPMX19_06232 0.14 -0.1 421,123 + MPMX19_06232 0.14 -0.2 421,123 + MPMX19_06232 0.14 -1.4 421,123 + MPMX19_06232 0.14 -0.5 421,123 + MPMX19_06232 0.14 +0.3 421,123 + MPMX19_06232 0.14 -0.6 421,123 + MPMX19_06232 0.14 -0.5 421,123 + MPMX19_06232 0.14 -0.8 421,123 + MPMX19_06232 0.14 -0.9 421,123 + MPMX19_06232 0.14 -1.1 421,123 + MPMX19_06232 0.14 -2.7 421,124 - MPMX19_06232 0.14 +1.7 421,124 - MPMX19_06232 0.14 -1.7 421,124 - MPMX19_06232 0.14 -0.8 421,124 - MPMX19_06232 0.14 +0.3 421,124 - MPMX19_06232 0.14 +1.9 421,124 - MPMX19_06232 0.14 +0.5 421,124 - MPMX19_06232 0.14 -0.1 421,124 - MPMX19_06232 0.14 +0.5 421,124 - MPMX19_06232 0.14 -0.1 421,124 - MPMX19_06232 0.14 +0.6 421,124 - MPMX19_06232 0.14 -2.1 421,124 - MPMX19_06232 0.14 -1.1 421,124 - MPMX19_06232 0.14 +0.0 421,124 - MPMX19_06232 0.14 -1.3 421,124 - MPMX19_06232 0.14 -1.5 421,124 - MPMX19_06232 0.14 +0.7 421,124 - MPMX19_06232 0.14 -1.7 421,249 + MPMX19_06232 0.20 -0.7 421,249 + MPMX19_06232 0.20 -0.9 421,249 + MPMX19_06232 0.20 -1.9 421,249 + MPMX19_06232 0.20 -0.6 421,249 + MPMX19_06232 0.20 +0.2 421,250 - MPMX19_06232 0.21 -1.5 421,250 - MPMX19_06232 0.21 +0.9 421,250 - MPMX19_06232 0.21 -0.9 421,250 - MPMX19_06232 0.21 -0.5 421,250 - MPMX19_06232 0.21 -0.1 421,250 - MPMX19_06232 0.21 +0.3 421,250 - MPMX19_06232 0.21 +2.1 421,324 + MPMX19_06232 0.25 -1.2 421,324 + MPMX19_06232 0.25 -2.3 421,324 + MPMX19_06232 0.25 -1.7 421,324 + MPMX19_06232 0.25 +0.5 421,324 + MPMX19_06232 0.25 -0.0 421,324 + MPMX19_06232 0.25 -0.1 421,324 + MPMX19_06232 0.25 -0.7 421,324 + MPMX19_06232 0.25 +0.5 421,324 + MPMX19_06232 0.25 -2.5 421,324 + MPMX19_06232 0.25 -0.7 421,325 - MPMX19_06232 0.25 -0.7 421,325 - MPMX19_06232 0.25 -1.5 421,325 - MPMX19_06232 0.25 +0.5 421,325 - MPMX19_06232 0.25 -0.1 421,325 - MPMX19_06232 0.25 +0.6 421,325 - MPMX19_06232 0.25 +0.1 421,325 - MPMX19_06232 0.25 -1.7 421,354 + MPMX19_06232 0.26 +0.6 421,432 + MPMX19_06232 0.31 -0.4 421,432 + MPMX19_06232 0.31 -0.1 421,432 + MPMX19_06232 0.31 +0.5 421,432 + MPMX19_06232 0.31 -1.1 421,433 - MPMX19_06232 0.31 +0.6 421,433 - MPMX19_06232 0.31 -0.4 421,433 - MPMX19_06232 0.31 +1.1 421,520 - MPMX19_06232 0.35 +0.9 421,520 - MPMX19_06232 0.35 -1.0 421,615 + MPMX19_06232 0.41 +0.5 421,615 + MPMX19_06232 0.41 +0.3 421,616 - MPMX19_06232 0.41 -1.5 421,616 - MPMX19_06232 0.41 +0.5 421,616 - MPMX19_06232 0.41 -0.7 421,616 - MPMX19_06232 0.41 +0.7
Or see this region's nucleotide sequence