Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06207

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06206 and MPMX19_06207 are separated by 388 nucleotidesMPMX19_06207 and MPMX19_06208 are separated by 114 nucleotidesMPMX19_06208 and MPMX19_06209 are separated by 32 nucleotidesMPMX19_06209 and MPMX19_06210 are separated by 4 nucleotidesMPMX19_06210 and MPMX19_06211 are separated by 73 nucleotidesMPMX19_06211 and MPMX19_06212 are separated by 38 nucleotidesMPMX19_06212 and MPMX19_06213 are separated by 75 nucleotides MPMX19_06206: MPMX19_06206 - Cell cycle response regulator CtrA, at 392,656 to 393,468 _06206 MPMX19_06207: MPMX19_06207 - hypothetical protein, at 393,857 to 394,300 _06207 MPMX19_06208: MPMX19_06208 - tRNA-Val, at 394,415 to 394,489 _06208 MPMX19_06209: MPMX19_06209 - tRNA-Gly, at 394,522 to 394,596 _06209 MPMX19_06210: MPMX19_06210 - tRNA-Asp, at 394,601 to 394,677 _06210 MPMX19_06211: MPMX19_06211 - tRNA-Ala, at 394,751 to 394,826 _06211 MPMX19_06212: MPMX19_06212 - tRNA-Leu, at 394,865 to 394,951 _06212 MPMX19_06213: MPMX19_06213 - Cardiolipin synthase B, at 395,027 to 396,661 _06213 Position (kb) 393 394 395Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.883 kb on + strand, within MPMX19_06206at 392.884 kb on - strand, within MPMX19_06206at 392.884 kb on - strand, within MPMX19_06206at 392.884 kb on - strand, within MPMX19_06206at 392.884 kb on - strand, within MPMX19_06206at 392.884 kb on - strand, within MPMX19_06206at 392.884 kb on - strand, within MPMX19_06206at 392.884 kb on - strand, within MPMX19_06206at 392.884 kb on - strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.885 kb on + strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.886 kb on - strand, within MPMX19_06206at 392.930 kb on + strand, within MPMX19_06206at 392.930 kb on + strand, within MPMX19_06206at 392.931 kb on - strand, within MPMX19_06206at 392.942 kb on + strand, within MPMX19_06206at 392.942 kb on + strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 392.943 kb on - strand, within MPMX19_06206at 393.107 kb on + strand, within MPMX19_06206at 393.107 kb on + strand, within MPMX19_06206at 393.107 kb on + strand, within MPMX19_06206at 393.107 kb on + strand, within MPMX19_06206at 393.108 kb on - strand, within MPMX19_06206at 393.394 kb on - strandat 393.394 kb on - strandat 393.498 kb on + strandat 393.499 kb on - strandat 393.499 kb on - strandat 393.499 kb on - strandat 393.574 kb on + strandat 393.601 kb on - strandat 393.601 kb on - strandat 393.606 kb on + strandat 393.606 kb on + strandat 393.606 kb on + strandat 393.607 kb on - strandat 393.624 kb on + strandat 393.625 kb on - strandat 393.635 kb on - strandat 393.635 kb on - strandat 393.648 kb on + strandat 393.651 kb on + strandat 393.687 kb on - strandat 393.734 kb on + strandat 393.734 kb on + strandat 393.735 kb on - strandat 393.735 kb on - strandat 393.750 kb on + strandat 393.750 kb on + strandat 393.750 kb on + strandat 393.751 kb on - strandat 393.751 kb on - strandat 393.751 kb on - strandat 393.751 kb on - strandat 393.751 kb on - strandat 393.751 kb on - strandat 393.751 kb on - strandat 393.788 kb on + strandat 393.788 kb on + strandat 393.788 kb on + strandat 393.788 kb on + strandat 393.789 kb on - strandat 393.789 kb on - strandat 393.809 kb on - strandat 393.822 kb on + strandat 393.822 kb on + strandat 393.822 kb on + strandat 393.822 kb on + strandat 393.822 kb on + strandat 393.822 kb on + strandat 393.823 kb on - strandat 393.823 kb on - strandat 393.823 kb on - strandat 393.823 kb on - strandat 393.823 kb on - strandat 394.034 kb on + strand, within MPMX19_06207at 394.034 kb on + strand, within MPMX19_06207at 394.034 kb on + strand, within MPMX19_06207at 394.047 kb on - strand, within MPMX19_06207at 394.047 kb on - strand, within MPMX19_06207at 394.160 kb on + strand, within MPMX19_06207at 394.160 kb on + strand, within MPMX19_06207at 394.160 kb on + strand, within MPMX19_06207at 394.161 kb on - strand, within MPMX19_06207at 394.501 kb on - strandat 394.501 kb on - strandat 394.503 kb on - strandat 394.696 kb on - strandat 394.696 kb on - strandat 394.698 kb on - strandat 394.698 kb on - strandat 394.698 kb on - strandat 394.786 kb on - strand, within MPMX19_06211at 394.786 kb on - strand, within MPMX19_06211at 394.786 kb on - strand, within MPMX19_06211at 394.799 kb on - strand, within MPMX19_06211at 394.799 kb on - strand, within MPMX19_06211at 394.799 kb on - strand, within MPMX19_06211at 394.799 kb on - strand, within MPMX19_06211at 394.989 kb on + strandat 394.989 kb on + strandat 394.989 kb on + strandat 394.990 kb on - strandat 394.990 kb on - strandat 394.993 kb on + strandat 394.993 kb on + strandat 394.993 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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392,883 + MPMX19_06206 0.28 -0.3
392,883 + MPMX19_06206 0.28 -0.1
392,883 + MPMX19_06206 0.28 -0.9
392,883 + MPMX19_06206 0.28 -0.5
392,883 + MPMX19_06206 0.28 +0.3
392,883 + MPMX19_06206 0.28 -2.4
392,883 + MPMX19_06206 0.28 -1.5
392,883 + MPMX19_06206 0.28 +0.4
392,883 + MPMX19_06206 0.28 -0.4
392,883 + MPMX19_06206 0.28 +0.9
392,883 + MPMX19_06206 0.28 +0.9
392,883 + MPMX19_06206 0.28 +0.3
392,883 + MPMX19_06206 0.28 +0.9
392,883 + MPMX19_06206 0.28 -0.1
392,883 + MPMX19_06206 0.28 -1.1
392,883 + MPMX19_06206 0.28 -1.1
392,883 + MPMX19_06206 0.28 -0.9
392,883 + MPMX19_06206 0.28 -1.5
392,883 + MPMX19_06206 0.28 +0.2
392,884 - MPMX19_06206 0.28 -1.8
392,884 - MPMX19_06206 0.28 -1.1
392,884 - MPMX19_06206 0.28 +0.5
392,884 - MPMX19_06206 0.28 -1.1
392,884 - MPMX19_06206 0.28 -0.7
392,884 - MPMX19_06206 0.28 +1.1
392,884 - MPMX19_06206 0.28 -0.7
392,884 - MPMX19_06206 0.28 +0.9
392,885 + MPMX19_06206 0.28 -0.3
392,885 + MPMX19_06206 0.28 -0.5
392,885 + MPMX19_06206 0.28 -0.5
392,885 + MPMX19_06206 0.28 +0.4
392,885 + MPMX19_06206 0.28 -0.3
392,885 + MPMX19_06206 0.28 +0.2
392,885 + MPMX19_06206 0.28 +0.2
392,885 + MPMX19_06206 0.28 +0.1
392,885 + MPMX19_06206 0.28 -0.1
392,885 + MPMX19_06206 0.28 -0.0
392,885 + MPMX19_06206 0.28 +0.1
392,885 + MPMX19_06206 0.28 -0.4
392,885 + MPMX19_06206 0.28 -1.5
392,885 + MPMX19_06206 0.28 -0.9
392,885 + MPMX19_06206 0.28 -1.7
392,885 + MPMX19_06206 0.28 +0.1
392,885 + MPMX19_06206 0.28 +1.0
392,885 + MPMX19_06206 0.28 -0.7
392,885 + MPMX19_06206 0.28 -1.4
392,885 + MPMX19_06206 0.28 -0.2
392,885 + MPMX19_06206 0.28 -1.3
392,885 + MPMX19_06206 0.28 -0.1
392,885 + MPMX19_06206 0.28 -2.1
392,885 + MPMX19_06206 0.28 -0.3
392,885 + MPMX19_06206 0.28 -0.6
392,885 + MPMX19_06206 0.28 +0.4
392,885 + MPMX19_06206 0.28 +0.5
392,886 - MPMX19_06206 0.28 -0.1
392,886 - MPMX19_06206 0.28 -0.7
392,886 - MPMX19_06206 0.28 +0.5
392,886 - MPMX19_06206 0.28 +0.5
392,886 - MPMX19_06206 0.28 -0.5
392,886 - MPMX19_06206 0.28 -0.5
392,886 - MPMX19_06206 0.28 -2.6
392,886 - MPMX19_06206 0.28 -1.6
392,886 - MPMX19_06206 0.28 -2.1
392,886 - MPMX19_06206 0.28 +0.5
392,886 - MPMX19_06206 0.28 +1.5
392,886 - MPMX19_06206 0.28 -1.0
392,886 - MPMX19_06206 0.28 -1.4
392,886 - MPMX19_06206 0.28 +0.3
392,886 - MPMX19_06206 0.28 -2.1
392,886 - MPMX19_06206 0.28 +0.0
392,886 - MPMX19_06206 0.28 -1.1
392,886 - MPMX19_06206 0.28 -1.9
392,886 - MPMX19_06206 0.28 -1.4
392,886 - MPMX19_06206 0.28 -0.5
392,886 - MPMX19_06206 0.28 +1.9
392,886 - MPMX19_06206 0.28 +1.1
392,886 - MPMX19_06206 0.28 -1.2
392,886 - MPMX19_06206 0.28 +0.9
392,930 + MPMX19_06206 0.34 +1.9
392,930 + MPMX19_06206 0.34 -0.0
392,931 - MPMX19_06206 0.34 -1.4
392,942 + MPMX19_06206 0.35 +0.6
392,942 + MPMX19_06206 0.35 -0.5
392,943 - MPMX19_06206 0.35 -0.1
392,943 - MPMX19_06206 0.35 -0.7
392,943 - MPMX19_06206 0.35 -0.1
392,943 - MPMX19_06206 0.35 -0.5
392,943 - MPMX19_06206 0.35 +0.1
392,943 - MPMX19_06206 0.35 -1.1
392,943 - MPMX19_06206 0.35 -1.7
392,943 - MPMX19_06206 0.35 -2.1
392,943 - MPMX19_06206 0.35 -1.8
392,943 - MPMX19_06206 0.35 -0.6
393,107 + MPMX19_06206 0.55 +1.7
393,107 + MPMX19_06206 0.55 -0.2
393,107 + MPMX19_06206 0.55 -1.6
393,107 + MPMX19_06206 0.55 -1.4
393,108 - MPMX19_06206 0.56 -0.5
393,394 - -0.4
393,394 - -1.1
393,498 + -1.1
393,499 - -1.2
393,499 - +3.7
393,499 - +2.7
393,574 + -0.8
393,601 - +0.3
393,601 - -0.1
393,606 + +0.3
393,606 + -0.1
393,606 + -0.7
393,607 - -1.1
393,624 + -0.1
393,625 - -0.1
393,635 - -0.2
393,635 - -0.9
393,648 + -0.5
393,651 + -0.0
393,687 - -0.8
393,734 + +0.7
393,734 + +0.4
393,735 - -1.2
393,735 - -0.1
393,750 + +0.3
393,750 + -0.5
393,750 + +0.4
393,751 - +0.1
393,751 - -1.1
393,751 - -0.7
393,751 - +0.6
393,751 - -0.7
393,751 - -0.9
393,751 - -0.7
393,788 + -0.0
393,788 + -1.6
393,788 + +0.2
393,788 + -1.1
393,789 - +0.2
393,789 - -1.1
393,809 - -2.9
393,822 + +0.3
393,822 + -0.9
393,822 + +0.5
393,822 + +0.4
393,822 + -2.9
393,822 + +0.5
393,823 - -0.0
393,823 - -1.7
393,823 - -0.4
393,823 - -1.6
393,823 - +0.3
394,034 + MPMX19_06207 0.40 -0.6
394,034 + MPMX19_06207 0.40 +0.5
394,034 + MPMX19_06207 0.40 -1.4
394,047 - MPMX19_06207 0.43 -0.9
394,047 - MPMX19_06207 0.43 -0.5
394,160 + MPMX19_06207 0.68 -1.1
394,160 + MPMX19_06207 0.68 +0.3
394,160 + MPMX19_06207 0.68 -1.5
394,161 - MPMX19_06207 0.68 -1.7
394,501 - -1.7
394,501 - -1.5
394,503 - +0.3
394,696 - +0.7
394,696 - +1.1
394,698 - -1.0
394,698 - -0.9
394,698 - -0.4
394,786 - MPMX19_06211 0.46 +0.2
394,786 - MPMX19_06211 0.46 -0.1
394,786 - MPMX19_06211 0.46 -0.5
394,799 - MPMX19_06211 0.63 -0.6
394,799 - MPMX19_06211 0.63 -1.5
394,799 - MPMX19_06211 0.63 -1.1
394,799 - MPMX19_06211 0.63 -0.7
394,989 + -2.3
394,989 + -0.1
394,989 + +0.2
394,990 - -0.5
394,990 - -0.1
394,993 + -0.5
394,993 + +0.3
394,993 + +0.3

Or see this region's nucleotide sequence