Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05795 and MPMX19_05796 are separated by 34 nucleotides MPMX19_05796 and MPMX19_05797 are separated by 73 nucleotides MPMX19_05797 and MPMX19_05798 are separated by 250 nucleotides
MPMX19_05795: MPMX19_05795 - 2-dehydro-3-deoxygluconokinase, at 518,343 to 519,263
_05795
MPMX19_05796: MPMX19_05796 - HTH-type transcriptional repressor BdcR, at 519,298 to 519,900
_05796
MPMX19_05797: MPMX19_05797 - Cyclic-di-GMP-binding biofilm dispersal mediator protein, at 519,974 to 520,687
_05797
MPMX19_05798: MPMX19_05798 - HTH-type transcriptional repressor NanR, at 520,938 to 521,789
_05798
Position (kb) 519
520
521 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 519.141 kb on + strand, within MPMX19_05795 at 519.141 kb on + strand, within MPMX19_05795 at 519.141 kb on + strand, within MPMX19_05795 at 519.141 kb on + strand, within MPMX19_05795 at 519.142 kb on - strand, within MPMX19_05795 at 519.357 kb on + strand at 519.358 kb on - strand at 519.591 kb on - strand, within MPMX19_05796 at 519.690 kb on - strand, within MPMX19_05796 at 519.690 kb on - strand, within MPMX19_05796 at 519.690 kb on - strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.740 kb on + strand, within MPMX19_05796 at 519.741 kb on - strand, within MPMX19_05796 at 519.801 kb on - strand, within MPMX19_05796 at 519.801 kb on - strand, within MPMX19_05796 at 519.801 kb on - strand, within MPMX19_05796 at 519.931 kb on + strand at 519.932 kb on - strand at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.304 kb on + strand, within MPMX19_05797 at 520.410 kb on - strand, within MPMX19_05797 at 520.410 kb on - strand, within MPMX19_05797 at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.716 kb on + strand at 520.716 kb on + strand at 520.716 kb on + strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.893 kb on + strand at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 519,141 + MPMX19_05795 0.87 -0.7 519,141 + MPMX19_05795 0.87 -0.1 519,141 + MPMX19_05795 0.87 -0.3 519,141 + MPMX19_05795 0.87 +0.5 519,142 - MPMX19_05795 0.87 -1.1 519,357 + -0.1 519,358 - -0.1 519,591 - MPMX19_05796 0.49 -0.1 519,690 - MPMX19_05796 0.65 +0.9 519,690 - MPMX19_05796 0.65 +0.9 519,690 - MPMX19_05796 0.65 -0.4 519,740 + MPMX19_05796 0.73 -1.1 519,740 + MPMX19_05796 0.73 -0.9 519,740 + MPMX19_05796 0.73 -0.0 519,740 + MPMX19_05796 0.73 +2.2 519,740 + MPMX19_05796 0.73 +1.9 519,740 + MPMX19_05796 0.73 +0.1 519,740 + MPMX19_05796 0.73 -0.1 519,741 - MPMX19_05796 0.73 +0.9 519,801 - MPMX19_05796 0.83 -0.1 519,801 - MPMX19_05796 0.83 -1.2 519,801 - MPMX19_05796 0.83 -0.4 519,931 + -1.1 519,932 - -0.5 520,082 + MPMX19_05797 0.15 -0.9 520,082 + MPMX19_05797 0.15 -1.1 520,082 + MPMX19_05797 0.15 +1.4 520,082 + MPMX19_05797 0.15 -0.1 520,082 + MPMX19_05797 0.15 -1.5 520,082 + MPMX19_05797 0.15 +1.2 520,082 + MPMX19_05797 0.15 +0.9 520,082 + MPMX19_05797 0.15 +0.3 520,082 + MPMX19_05797 0.15 +0.7 520,082 + MPMX19_05797 0.15 +1.4 520,083 - MPMX19_05797 0.15 -0.7 520,083 - MPMX19_05797 0.15 -0.5 520,083 - MPMX19_05797 0.15 +0.4 520,083 - MPMX19_05797 0.15 +0.1 520,083 - MPMX19_05797 0.15 -1.1 520,083 - MPMX19_05797 0.15 -1.5 520,083 - MPMX19_05797 0.15 +0.9 520,083 - MPMX19_05797 0.15 -1.5 520,083 - MPMX19_05797 0.15 +1.4 520,083 - MPMX19_05797 0.15 -0.7 520,083 - MPMX19_05797 0.15 +0.3 520,083 - MPMX19_05797 0.15 -0.5 520,083 - MPMX19_05797 0.15 +0.2 520,304 + MPMX19_05797 0.46 +2.2 520,410 - MPMX19_05797 0.61 +1.2 520,410 - MPMX19_05797 0.61 +1.5 520,616 + +0.7 520,616 + -1.3 520,616 + +1.0 520,616 + -0.6 520,616 + +0.6 520,616 + +0.6 520,617 - -1.3 520,617 - -0.8 520,617 - +3.2 520,617 - +0.9 520,617 - -0.1 520,617 - -0.1 520,617 - -1.1 520,617 - +1.2 520,617 - +0.4 520,617 - +0.9 520,617 - -1.5 520,716 + +0.4 520,716 + -1.9 520,716 + -0.4 520,717 - +0.5 520,717 - +0.9 520,717 - +0.9 520,717 - +1.1 520,717 - -1.3 520,893 + -0.6 521,185 - MPMX19_05798 0.29 -0.7 521,185 - MPMX19_05798 0.29 +0.1 521,185 - MPMX19_05798 0.29 -0.7 521,185 - MPMX19_05798 0.29 -0.7 521,185 - MPMX19_05798 0.29 -1.7
Or see this region's nucleotide sequence