Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04703

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04701 and MPMX19_04702 are separated by 10 nucleotidesMPMX19_04702 and MPMX19_04703 are separated by 66 nucleotidesMPMX19_04703 and MPMX19_04704 are separated by 63 nucleotides MPMX19_04701: MPMX19_04701 - Transcriptional regulatory protein FixJ, at 87,527 to 88,171 _04701 MPMX19_04702: MPMX19_04702 - hypothetical protein, at 88,182 to 88,931 _04702 MPMX19_04703: MPMX19_04703 - L-serine dehydratase TdcG, at 88,998 to 90,380 _04703 MPMX19_04704: MPMX19_04704 - Serine hydroxymethyltransferase 2, at 90,444 to 91,718 _04704 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 88.397 kb on + strand, within MPMX19_04702at 88.398 kb on - strand, within MPMX19_04702at 88.398 kb on - strand, within MPMX19_04702at 88.766 kb on + strand, within MPMX19_04702at 88.766 kb on + strand, within MPMX19_04702at 88.766 kb on + strand, within MPMX19_04702at 88.767 kb on - strand, within MPMX19_04702at 88.767 kb on - strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.911 kb on + strandat 88.912 kb on - strandat 89.464 kb on + strand, within MPMX19_04703at 89.464 kb on + strand, within MPMX19_04703at 89.464 kb on + strand, within MPMX19_04703at 89.464 kb on + strand, within MPMX19_04703at 89.465 kb on - strand, within MPMX19_04703at 89.465 kb on - strand, within MPMX19_04703at 89.465 kb on - strand, within MPMX19_04703at 89.467 kb on + strand, within MPMX19_04703at 89.467 kb on + strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.564 kb on - strand, within MPMX19_04703at 89.564 kb on - strand, within MPMX19_04703at 89.693 kb on + strand, within MPMX19_04703at 89.693 kb on + strand, within MPMX19_04703at 89.694 kb on - strand, within MPMX19_04703at 89.861 kb on - strand, within MPMX19_04703at 89.947 kb on + strand, within MPMX19_04703at 89.947 kb on + strand, within MPMX19_04703at 89.948 kb on - strand, within MPMX19_04703at 89.948 kb on - strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.111 kb on + strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.112 kb on - strand, within MPMX19_04703at 90.413 kb on - strandat 90.451 kb on + strandat 90.451 kb on + strandat 90.451 kb on + strandat 90.452 kb on - strandat 90.815 kb on + strand, within MPMX19_04704at 90.815 kb on + strand, within MPMX19_04704at 90.815 kb on + strand, within MPMX19_04704at 90.816 kb on - strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.857 kb on - strand, within MPMX19_04704at 90.857 kb on - strand, within MPMX19_04704at 91.099 kb on + strand, within MPMX19_04704at 91.099 kb on + strand, within MPMX19_04704at 91.100 kb on - strand, within MPMX19_04704at 91.123 kb on + strand, within MPMX19_04704at 91.123 kb on + strand, within MPMX19_04704at 91.123 kb on + strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.279 kb on + strand, within MPMX19_04704at 91.279 kb on + strand, within MPMX19_04704at 91.279 kb on + strand, within MPMX19_04704at 91.280 kb on - strand, within MPMX19_04704at 91.280 kb on - strand, within MPMX19_04704

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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88,397 + MPMX19_04702 0.29 -0.6
88,398 - MPMX19_04702 0.29 -0.9
88,398 - MPMX19_04702 0.29 +0.2
88,766 + MPMX19_04702 0.78 +2.1
88,766 + MPMX19_04702 0.78 -0.4
88,766 + MPMX19_04702 0.78 -0.9
88,767 - MPMX19_04702 0.78 -0.6
88,767 - MPMX19_04702 0.78 -0.3
88,778 + MPMX19_04702 0.79 -2.5
88,778 + MPMX19_04702 0.79 -0.9
88,778 + MPMX19_04702 0.79 -1.4
88,778 + MPMX19_04702 0.79 +0.5
88,778 + MPMX19_04702 0.79 -0.5
88,778 + MPMX19_04702 0.79 -1.2
88,778 + MPMX19_04702 0.79 -1.2
88,778 + MPMX19_04702 0.79 -1.7
88,778 + MPMX19_04702 0.79 -1.2
88,778 + MPMX19_04702 0.79 +0.1
88,778 + MPMX19_04702 0.79 -2.5
88,778 + MPMX19_04702 0.79 -1.2
88,778 + MPMX19_04702 0.79 -0.5
88,778 + MPMX19_04702 0.79 -0.6
88,778 + MPMX19_04702 0.79 -0.8
88,779 - MPMX19_04702 0.80 -1.4
88,779 - MPMX19_04702 0.80 +0.4
88,779 - MPMX19_04702 0.80 +0.4
88,779 - MPMX19_04702 0.80 -0.3
88,779 - MPMX19_04702 0.80 -0.9
88,779 - MPMX19_04702 0.80 +0.1
88,779 - MPMX19_04702 0.80 +0.5
88,779 - MPMX19_04702 0.80 -2.1
88,779 - MPMX19_04702 0.80 -0.7
88,779 - MPMX19_04702 0.80 -0.6
88,779 - MPMX19_04702 0.80 -0.3
88,780 + MPMX19_04702 0.80 -1.5
88,780 + MPMX19_04702 0.80 -0.5
88,780 + MPMX19_04702 0.80 -1.5
88,780 + MPMX19_04702 0.80 -0.3
88,780 + MPMX19_04702 0.80 +0.1
88,781 - MPMX19_04702 0.80 -0.2
88,781 - MPMX19_04702 0.80 -1.1
88,781 - MPMX19_04702 0.80 +0.5
88,781 - MPMX19_04702 0.80 -1.6
88,781 - MPMX19_04702 0.80 -0.6
88,781 - MPMX19_04702 0.80 -0.2
88,781 - MPMX19_04702 0.80 -1.0
88,781 - MPMX19_04702 0.80 -0.9
88,781 - MPMX19_04702 0.80 -1.6
88,911 + -1.2
88,912 - -2.6
89,464 + MPMX19_04703 0.34 -0.6
89,464 + MPMX19_04703 0.34 -0.1
89,464 + MPMX19_04703 0.34 +0.8
89,464 + MPMX19_04703 0.34 +0.1
89,465 - MPMX19_04703 0.34 -1.0
89,465 - MPMX19_04703 0.34 +0.4
89,465 - MPMX19_04703 0.34 +0.1
89,467 + MPMX19_04703 0.34 +0.7
89,467 + MPMX19_04703 0.34 +0.8
89,468 - MPMX19_04703 0.34 +1.1
89,468 - MPMX19_04703 0.34 -0.8
89,468 - MPMX19_04703 0.34 -1.4
89,468 - MPMX19_04703 0.34 -2.1
89,468 - MPMX19_04703 0.34 -2.5
89,563 + MPMX19_04703 0.41 -0.2
89,563 + MPMX19_04703 0.41 -0.3
89,563 + MPMX19_04703 0.41 -0.9
89,563 + MPMX19_04703 0.41 -0.5
89,564 - MPMX19_04703 0.41 -1.4
89,564 - MPMX19_04703 0.41 -0.5
89,693 + MPMX19_04703 0.50 +0.3
89,693 + MPMX19_04703 0.50 +0.1
89,694 - MPMX19_04703 0.50 -0.3
89,861 - MPMX19_04703 0.62 -0.6
89,947 + MPMX19_04703 0.69 +0.5
89,947 + MPMX19_04703 0.69 -0.5
89,948 - MPMX19_04703 0.69 +0.1
89,948 - MPMX19_04703 0.69 -0.1
90,111 + MPMX19_04703 0.80 -1.7
90,111 + MPMX19_04703 0.80 +1.1
90,111 + MPMX19_04703 0.80 +0.5
90,111 + MPMX19_04703 0.80 -1.2
90,111 + MPMX19_04703 0.80 -0.2
90,111 + MPMX19_04703 0.80 -0.9
90,112 - MPMX19_04703 0.81 +0.1
90,112 - MPMX19_04703 0.81 -0.7
90,112 - MPMX19_04703 0.81 -0.2
90,112 - MPMX19_04703 0.81 +0.4
90,112 - MPMX19_04703 0.81 +0.1
90,112 - MPMX19_04703 0.81 -0.5
90,112 - MPMX19_04703 0.81 +1.1
90,413 - -0.7
90,451 + -1.1
90,451 + +0.1
90,451 + -1.1
90,452 - -1.3
90,815 + MPMX19_04704 0.29 -0.7
90,815 + MPMX19_04704 0.29 -1.2
90,815 + MPMX19_04704 0.29 -0.1
90,816 - MPMX19_04704 0.29 +0.3
90,856 + MPMX19_04704 0.32 -1.1
90,856 + MPMX19_04704 0.32 +0.1
90,856 + MPMX19_04704 0.32 -3.1
90,856 + MPMX19_04704 0.32 -0.5
90,856 + MPMX19_04704 0.32 +0.4
90,856 + MPMX19_04704 0.32 -0.3
90,857 - MPMX19_04704 0.32 -0.8
90,857 - MPMX19_04704 0.32 -0.5
91,099 + MPMX19_04704 0.51 -0.2
91,099 + MPMX19_04704 0.51 +1.1
91,100 - MPMX19_04704 0.51 -0.8
91,123 + MPMX19_04704 0.53 +0.3
91,123 + MPMX19_04704 0.53 -1.1
91,123 + MPMX19_04704 0.53 +0.4
91,124 - MPMX19_04704 0.53 +0.8
91,124 - MPMX19_04704 0.53 -0.1
91,124 - MPMX19_04704 0.53 -0.2
91,124 - MPMX19_04704 0.53 -0.9
91,246 + MPMX19_04704 0.63 +0.7
91,246 + MPMX19_04704 0.63 +0.3
91,246 + MPMX19_04704 0.63 +0.1
91,246 + MPMX19_04704 0.63 +0.2
91,246 + MPMX19_04704 0.63 +0.2
91,246 + MPMX19_04704 0.63 -1.2
91,247 - MPMX19_04704 0.63 -0.5
91,247 - MPMX19_04704 0.63 +0.4
91,247 - MPMX19_04704 0.63 +2.7
91,247 - MPMX19_04704 0.63 -0.8
91,247 - MPMX19_04704 0.63 -1.5
91,279 + MPMX19_04704 0.65 -1.2
91,279 + MPMX19_04704 0.65 -1.5
91,279 + MPMX19_04704 0.65 -1.2
91,280 - MPMX19_04704 0.66 -1.2
91,280 - MPMX19_04704 0.66 -0.5

Or see this region's nucleotide sequence