Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04595 and MPMX19_04596 are separated by 137 nucleotides MPMX19_04596 and MPMX19_04597 overlap by 4 nucleotides
MPMX19_04595: MPMX19_04595 - Inner membrane protein CreD, at 978,814 to 980,190
_04595
MPMX19_04596: MPMX19_04596 - Alkaline phosphatase synthesis transcriptional regulatory protein PhoP, at 980,328 to 981,020
_04596
MPMX19_04597: MPMX19_04597 - Adaptive-response sensory-kinase SasA, at 981,017 to 982,657
_04597
Position (kb) 980
981
982 Strain fitness (log2 ratio) -2
-1
0
1
2 at 979.346 kb on + strand, within MPMX19_04595 at 979.346 kb on + strand, within MPMX19_04595 at 979.811 kb on + strand, within MPMX19_04595 at 979.812 kb on - strand, within MPMX19_04595 at 979.898 kb on + strand, within MPMX19_04595 at 979.928 kb on + strand, within MPMX19_04595 at 979.928 kb on + strand, within MPMX19_04595 at 979.928 kb on + strand, within MPMX19_04595 at 979.929 kb on - strand, within MPMX19_04595 at 979.929 kb on - strand, within MPMX19_04595 at 980.010 kb on + strand, within MPMX19_04595 at 980.140 kb on + strand at 980.140 kb on + strand at 980.141 kb on - strand at 980.141 kb on - strand at 980.313 kb on + strand at 980.313 kb on + strand at 980.314 kb on - strand at 980.314 kb on - strand at 980.619 kb on + strand, within MPMX19_04596 at 980.619 kb on + strand, within MPMX19_04596 at 980.619 kb on + strand, within MPMX19_04596 at 980.620 kb on - strand, within MPMX19_04596 at 980.620 kb on - strand, within MPMX19_04596 at 980.883 kb on + strand, within MPMX19_04596 at 980.883 kb on + strand, within MPMX19_04596 at 980.884 kb on - strand, within MPMX19_04596 at 980.884 kb on - strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.997 kb on + strand at 980.997 kb on + strand at 980.998 kb on - strand at 980.998 kb on - strand at 981.206 kb on + strand, within MPMX19_04597 at 981.206 kb on + strand, within MPMX19_04597 at 981.207 kb on - strand, within MPMX19_04597 at 981.207 kb on - strand, within MPMX19_04597 at 981.207 kb on - strand, within MPMX19_04597 at 981.207 kb on - strand, within MPMX19_04597 at 981.770 kb on + strand, within MPMX19_04597 at 981.771 kb on - strand, within MPMX19_04597 at 981.771 kb on - strand, within MPMX19_04597 at 982.013 kb on + strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 979,346 + MPMX19_04595 0.39 -0.6 979,346 + MPMX19_04595 0.39 +1.5 979,811 + MPMX19_04595 0.72 -0.2 979,812 - MPMX19_04595 0.72 +1.1 979,898 + MPMX19_04595 0.79 +0.3 979,928 + MPMX19_04595 0.81 +1.5 979,928 + MPMX19_04595 0.81 +0.1 979,928 + MPMX19_04595 0.81 +1.1 979,929 - MPMX19_04595 0.81 -1.1 979,929 - MPMX19_04595 0.81 +0.3 980,010 + MPMX19_04595 0.87 -0.1 980,140 + +1.2 980,140 + -0.7 980,141 - +0.2 980,141 - -0.4 980,313 + +1.5 980,313 + -0.4 980,314 - +0.3 980,314 - -0.4 980,619 + MPMX19_04596 0.42 +0.6 980,619 + MPMX19_04596 0.42 -0.4 980,619 + MPMX19_04596 0.42 +0.4 980,620 - MPMX19_04596 0.42 -1.9 980,620 - MPMX19_04596 0.42 +1.1 980,883 + MPMX19_04596 0.80 +1.3 980,883 + MPMX19_04596 0.80 -0.0 980,884 - MPMX19_04596 0.80 +0.2 980,884 - MPMX19_04596 0.80 +0.1 980,898 + MPMX19_04596 0.82 +0.7 980,898 + MPMX19_04596 0.82 +0.1 980,898 + MPMX19_04596 0.82 +0.5 980,898 + MPMX19_04596 0.82 -0.8 980,898 + MPMX19_04596 0.82 -0.9 980,898 + MPMX19_04596 0.82 -1.1 980,899 - MPMX19_04596 0.82 +1.3 980,899 - MPMX19_04596 0.82 +0.9 980,899 - MPMX19_04596 0.82 +0.0 980,899 - MPMX19_04596 0.82 -0.5 980,899 - MPMX19_04596 0.82 +0.9 980,899 - MPMX19_04596 0.82 -0.1 980,997 + +0.9 980,997 + +0.9 980,998 - +0.1 980,998 - +0.9 981,206 + MPMX19_04597 0.12 -0.4 981,206 + MPMX19_04597 0.12 -0.7 981,207 - MPMX19_04597 0.12 +0.5 981,207 - MPMX19_04597 0.12 +1.9 981,207 - MPMX19_04597 0.12 -0.9 981,207 - MPMX19_04597 0.12 -1.4 981,770 + MPMX19_04597 0.46 -0.1 981,771 - MPMX19_04597 0.46 -0.7 981,771 - MPMX19_04597 0.46 -0.3 982,013 + MPMX19_04597 0.61 -0.7 982,014 - MPMX19_04597 0.61 +0.1 982,014 - MPMX19_04597 0.61 -0.1 982,014 - MPMX19_04597 0.61 -0.7 982,014 - MPMX19_04597 0.61 +0.9 982,014 - MPMX19_04597 0.61 +0.2 982,014 - MPMX19_04597 0.61 +0.2 982,014 - MPMX19_04597 0.61 +0.1 982,014 - MPMX19_04597 0.61 -0.2
Or see this region's nucleotide sequence