Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04579

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04578 and MPMX19_04579 overlap by 4 nucleotidesMPMX19_04579 and MPMX19_04580 are separated by 177 nucleotidesMPMX19_04580 and MPMX19_04581 are separated by 22 nucleotides MPMX19_04578: MPMX19_04578 - dTDP-L-rhamnose 4-epimerase, at 956,654 to 957,721 _04578 MPMX19_04579: MPMX19_04579 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 957,718 to 958,086 _04579 MPMX19_04580: MPMX19_04580 - hypothetical protein, at 958,264 to 958,611 _04580 MPMX19_04581: MPMX19_04581 - Formamidase, at 958,634 to 959,866 _04581 Position (kb) 957 958 959Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 956.927 kb on + strand, within MPMX19_04578at 956.927 kb on + strand, within MPMX19_04578at 956.927 kb on + strand, within MPMX19_04578at 956.927 kb on + strand, within MPMX19_04578at 956.928 kb on - strand, within MPMX19_04578at 956.928 kb on - strand, within MPMX19_04578at 956.988 kb on + strand, within MPMX19_04578at 956.988 kb on + strand, within MPMX19_04578at 956.988 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.024 kb on - strand, within MPMX19_04578at 957.024 kb on - strand, within MPMX19_04578at 957.024 kb on - strand, within MPMX19_04578at 957.191 kb on + strand, within MPMX19_04578at 957.191 kb on + strand, within MPMX19_04578at 957.192 kb on - strand, within MPMX19_04578at 957.254 kb on - strand, within MPMX19_04578at 957.273 kb on - strand, within MPMX19_04578at 957.284 kb on + strand, within MPMX19_04578at 957.314 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.731 kb on + strandat 957.731 kb on + strandat 957.731 kb on + strandat 957.731 kb on + strandat 957.731 kb on + strandat 957.732 kb on - strandat 957.732 kb on - strandat 957.732 kb on - strandat 957.732 kb on - strandat 957.783 kb on + strand, within MPMX19_04579at 957.784 kb on - strand, within MPMX19_04579at 957.784 kb on - strand, within MPMX19_04579at 957.784 kb on - strand, within MPMX19_04579at 957.784 kb on - strand, within MPMX19_04579at 957.818 kb on + strand, within MPMX19_04579at 957.818 kb on + strand, within MPMX19_04579at 957.819 kb on - strand, within MPMX19_04579at 957.852 kb on + strand, within MPMX19_04579at 957.853 kb on - strand, within MPMX19_04579at 957.892 kb on + strand, within MPMX19_04579at 957.892 kb on + strand, within MPMX19_04579at 957.893 kb on - strand, within MPMX19_04579at 958.070 kb on + strandat 958.070 kb on + strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.321 kb on - strand, within MPMX19_04580at 958.321 kb on - strand, within MPMX19_04580at 958.321 kb on - strand, within MPMX19_04580at 958.321 kb on - strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.595 kb on + strandat 958.595 kb on + strandat 958.595 kb on + strandat 958.595 kb on + strandat 958.595 kb on + strandat 958.596 kb on - strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.635 kb on + strandat 958.635 kb on + strandat 958.635 kb on + strandat 958.635 kb on + strandat 958.636 kb on - strandat 958.818 kb on + strand, within MPMX19_04581at 958.818 kb on + strand, within MPMX19_04581at 958.836 kb on + strand, within MPMX19_04581at 958.837 kb on - strand, within MPMX19_04581at 958.854 kb on + strand, within MPMX19_04581at 958.854 kb on + strand, within MPMX19_04581at 958.854 kb on + strand, within MPMX19_04581at 958.905 kb on + strand, within MPMX19_04581at 958.905 kb on + strand, within MPMX19_04581at 958.905 kb on + strand, within MPMX19_04581at 958.906 kb on - strand, within MPMX19_04581at 958.953 kb on + strand, within MPMX19_04581at 958.953 kb on + strand, within MPMX19_04581at 958.953 kb on + strand, within MPMX19_04581at 958.953 kb on + strand, within MPMX19_04581at 958.954 kb on - strand, within MPMX19_04581at 958.954 kb on - strand, within MPMX19_04581at 958.954 kb on - strand, within MPMX19_04581at 958.954 kb on - strand, within MPMX19_04581at 958.962 kb on + strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 959.010 kb on + strand, within MPMX19_04581at 959.011 kb on - strand, within MPMX19_04581at 959.011 kb on - strand, within MPMX19_04581

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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956,927 + MPMX19_04578 0.26 -1.9
956,927 + MPMX19_04578 0.26 +0.1
956,927 + MPMX19_04578 0.26 -0.0
956,927 + MPMX19_04578 0.26 -0.4
956,928 - MPMX19_04578 0.26 -1.7
956,928 - MPMX19_04578 0.26 +0.2
956,988 + MPMX19_04578 0.31 +0.0
956,988 + MPMX19_04578 0.31 -1.4
956,988 + MPMX19_04578 0.31 -1.1
957,023 + MPMX19_04578 0.35 +1.5
957,023 + MPMX19_04578 0.35 +1.7
957,023 + MPMX19_04578 0.35 -1.2
957,023 + MPMX19_04578 0.35 +1.6
957,023 + MPMX19_04578 0.35 +0.3
957,023 + MPMX19_04578 0.35 -1.1
957,024 - MPMX19_04578 0.35 +0.6
957,024 - MPMX19_04578 0.35 -0.1
957,024 - MPMX19_04578 0.35 +0.5
957,191 + MPMX19_04578 0.50 -1.9
957,191 + MPMX19_04578 0.50 -0.5
957,192 - MPMX19_04578 0.50 +0.2
957,254 - MPMX19_04578 0.56 -1.9
957,273 - MPMX19_04578 0.58 -0.1
957,284 + MPMX19_04578 0.59 -0.1
957,314 + MPMX19_04578 0.62 -0.3
957,473 + MPMX19_04578 0.77 +0.1
957,473 + MPMX19_04578 0.77 -0.7
957,473 + MPMX19_04578 0.77 -2.2
957,473 + MPMX19_04578 0.77 -0.3
957,474 - MPMX19_04578 0.77 -1.7
957,474 - MPMX19_04578 0.77 -0.1
957,474 - MPMX19_04578 0.77 -0.7
957,474 - MPMX19_04578 0.77 -1.1
957,474 - MPMX19_04578 0.77 +0.0
957,474 - MPMX19_04578 0.77 -0.8
957,474 - MPMX19_04578 0.77 -2.1
957,731 + +0.1
957,731 + +1.6
957,731 + +0.7
957,731 + -0.5
957,731 + +1.2
957,732 - -1.2
957,732 - +0.1
957,732 - -0.5
957,732 - -0.8
957,783 + MPMX19_04579 0.18 -0.8
957,784 - MPMX19_04579 0.18 -2.0
957,784 - MPMX19_04579 0.18 +0.9
957,784 - MPMX19_04579 0.18 +0.1
957,784 - MPMX19_04579 0.18 -0.9
957,818 + MPMX19_04579 0.27 -2.1
957,818 + MPMX19_04579 0.27 -0.7
957,819 - MPMX19_04579 0.27 -2.3
957,852 + MPMX19_04579 0.36 -1.7
957,853 - MPMX19_04579 0.37 -2.3
957,892 + MPMX19_04579 0.47 -1.7
957,892 + MPMX19_04579 0.47 -0.1
957,893 - MPMX19_04579 0.47 -1.7
958,070 + +0.3
958,070 + +0.3
958,071 - -0.2
958,071 - -0.5
958,071 - -1.7
958,071 - -1.7
958,071 - -0.1
958,071 - -0.8
958,320 + MPMX19_04580 0.16 +0.3
958,320 + MPMX19_04580 0.16 -0.1
958,320 + MPMX19_04580 0.16 -0.4
958,320 + MPMX19_04580 0.16 -0.9
958,320 + MPMX19_04580 0.16 -2.4
958,320 + MPMX19_04580 0.16 -0.2
958,320 + MPMX19_04580 0.16 +0.5
958,320 + MPMX19_04580 0.16 -0.1
958,320 + MPMX19_04580 0.16 -1.1
958,321 - MPMX19_04580 0.16 +0.3
958,321 - MPMX19_04580 0.16 -0.4
958,321 - MPMX19_04580 0.16 -0.9
958,321 - MPMX19_04580 0.16 -1.1
958,380 + MPMX19_04580 0.33 -1.9
958,380 + MPMX19_04580 0.33 +0.6
958,380 + MPMX19_04580 0.33 -0.9
958,380 + MPMX19_04580 0.33 -0.3
958,380 + MPMX19_04580 0.33 +1.6
958,380 + MPMX19_04580 0.33 -0.9
958,380 + MPMX19_04580 0.33 +0.6
958,380 + MPMX19_04580 0.33 -2.6
958,380 + MPMX19_04580 0.33 -1.0
958,380 + MPMX19_04580 0.33 +0.9
958,380 + MPMX19_04580 0.33 +0.2
958,380 + MPMX19_04580 0.33 +1.6
958,380 + MPMX19_04580 0.33 -0.1
958,380 + MPMX19_04580 0.33 +0.3
958,380 + MPMX19_04580 0.33 -0.5
958,380 + MPMX19_04580 0.33 -1.1
958,380 + MPMX19_04580 0.33 -0.4
958,380 + MPMX19_04580 0.33 -1.0
958,380 + MPMX19_04580 0.33 -0.1
958,380 + MPMX19_04580 0.33 -0.2
958,381 - MPMX19_04580 0.34 +0.9
958,381 - MPMX19_04580 0.34 -1.1
958,381 - MPMX19_04580 0.34 -1.7
958,381 - MPMX19_04580 0.34 -0.8
958,381 - MPMX19_04580 0.34 -0.1
958,381 - MPMX19_04580 0.34 +0.5
958,381 - MPMX19_04580 0.34 +0.1
958,381 - MPMX19_04580 0.34 +1.3
958,381 - MPMX19_04580 0.34 -0.1
958,381 - MPMX19_04580 0.34 -0.6
958,381 - MPMX19_04580 0.34 +1.3
958,381 - MPMX19_04580 0.34 +0.9
958,381 - MPMX19_04580 0.34 +0.3
958,381 - MPMX19_04580 0.34 +0.1
958,381 - MPMX19_04580 0.34 +0.9
958,381 - MPMX19_04580 0.34 +0.9
958,386 + MPMX19_04580 0.35 +1.5
958,386 + MPMX19_04580 0.35 -0.1
958,386 + MPMX19_04580 0.35 -0.1
958,386 + MPMX19_04580 0.35 -0.7
958,386 + MPMX19_04580 0.35 +0.3
958,386 + MPMX19_04580 0.35 -0.1
958,386 + MPMX19_04580 0.35 +0.6
958,386 + MPMX19_04580 0.35 +0.1
958,387 - MPMX19_04580 0.35 +1.1
958,387 - MPMX19_04580 0.35 +0.4
958,387 - MPMX19_04580 0.35 -0.1
958,387 - MPMX19_04580 0.35 +0.5
958,387 - MPMX19_04580 0.35 +0.5
958,595 + +0.5
958,595 + +0.5
958,595 + -0.7
958,595 + -0.7
958,595 + -0.1
958,596 - -0.7
958,601 + -3.3
958,601 + -1.1
958,601 + -0.7
958,601 + -1.1
958,601 + -1.4
958,601 + -1.7
958,601 + -0.9
958,601 + +0.8
958,601 + -0.6
958,601 + -0.1
958,601 + -1.4
958,602 - +0.2
958,602 - +0.6
958,602 - -0.1
958,602 - +0.7
958,602 - +0.2
958,602 - +0.3
958,602 - +0.0
958,635 + +1.6
958,635 + -1.7
958,635 + +1.9
958,635 + -0.7
958,636 - +1.3
958,818 + MPMX19_04581 0.15 -0.7
958,818 + MPMX19_04581 0.15 -0.5
958,836 + MPMX19_04581 0.16 -1.9
958,837 - MPMX19_04581 0.16 -0.5
958,854 + MPMX19_04581 0.18 -0.8
958,854 + MPMX19_04581 0.18 -0.7
958,854 + MPMX19_04581 0.18 +0.9
958,905 + MPMX19_04581 0.22 +0.3
958,905 + MPMX19_04581 0.22 -1.4
958,905 + MPMX19_04581 0.22 -1.1
958,906 - MPMX19_04581 0.22 -0.7
958,953 + MPMX19_04581 0.26 -0.3
958,953 + MPMX19_04581 0.26 +0.2
958,953 + MPMX19_04581 0.26 -0.4
958,953 + MPMX19_04581 0.26 -0.2
958,954 - MPMX19_04581 0.26 -0.2
958,954 - MPMX19_04581 0.26 +1.2
958,954 - MPMX19_04581 0.26 +0.6
958,954 - MPMX19_04581 0.26 +0.2
958,962 + MPMX19_04581 0.27 -2.0
958,963 - MPMX19_04581 0.27 +0.5
958,963 - MPMX19_04581 0.27 -0.7
958,963 - MPMX19_04581 0.27 -0.9
958,963 - MPMX19_04581 0.27 -0.2
958,963 - MPMX19_04581 0.27 -1.1
959,010 + MPMX19_04581 0.30 +0.4
959,011 - MPMX19_04581 0.31 -0.1
959,011 - MPMX19_04581 0.31 -1.2

Or see this region's nucleotide sequence