Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04064 and MPMX19_04065 are separated by 8 nucleotides MPMX19_04065 and MPMX19_04066 are separated by 109 nucleotides MPMX19_04066 and MPMX19_04067 are separated by 40 nucleotides
MPMX19_04064: MPMX19_04064 - hypothetical protein, at 368,714 to 370,516
_04064
MPMX19_04065: MPMX19_04065 - Fe(3+)-binding periplasmic protein, at 370,525 to 371,511
_04065
MPMX19_04066: MPMX19_04066 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 371,621 to 372,439
_04066
MPMX19_04067: MPMX19_04067 - Spermidine/putrescine import ATP-binding protein PotA, at 372,480 to 373,544
_04067
Position (kb) 370
371
372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 369.705 kb on + strand, within MPMX19_04064 at 369.705 kb on + strand, within MPMX19_04064 at 369.705 kb on + strand, within MPMX19_04064 at 369.705 kb on + strand, within MPMX19_04064 at 369.706 kb on - strand, within MPMX19_04064 at 369.728 kb on + strand, within MPMX19_04064 at 369.729 kb on - strand, within MPMX19_04064 at 369.729 kb on - strand, within MPMX19_04064 at 369.729 kb on - strand, within MPMX19_04064 at 370.259 kb on + strand, within MPMX19_04064 at 370.260 kb on - strand, within MPMX19_04064 at 370.507 kb on + strand at 370.507 kb on + strand at 370.507 kb on + strand at 370.507 kb on + strand at 370.507 kb on + strand at 370.507 kb on + strand at 370.507 kb on + strand at 370.595 kb on + strand at 370.595 kb on + strand at 370.595 kb on + strand at 370.850 kb on + strand, within MPMX19_04065 at 370.850 kb on + strand, within MPMX19_04065 at 370.850 kb on + strand, within MPMX19_04065 at 370.850 kb on + strand, within MPMX19_04065 at 370.851 kb on - strand, within MPMX19_04065 at 370.851 kb on - strand, within MPMX19_04065 at 370.851 kb on - strand, within MPMX19_04065 at 370.851 kb on - strand, within MPMX19_04065 at 370.851 kb on - strand, within MPMX19_04065 at 370.868 kb on + strand, within MPMX19_04065 at 370.952 kb on + strand, within MPMX19_04065 at 370.952 kb on + strand, within MPMX19_04065 at 370.952 kb on + strand, within MPMX19_04065 at 370.952 kb on + strand, within MPMX19_04065 at 370.952 kb on + strand, within MPMX19_04065 at 370.952 kb on + strand, within MPMX19_04065 at 370.953 kb on - strand, within MPMX19_04065 at 370.953 kb on - strand, within MPMX19_04065 at 370.953 kb on - strand, within MPMX19_04065 at 370.953 kb on - strand, within MPMX19_04065 at 370.953 kb on - strand, within MPMX19_04065 at 370.953 kb on - strand, within MPMX19_04065 at 370.953 kb on - strand, within MPMX19_04065 at 370.953 kb on - strand, within MPMX19_04065 at 370.955 kb on + strand, within MPMX19_04065 at 370.955 kb on + strand, within MPMX19_04065 at 370.955 kb on + strand, within MPMX19_04065 at 370.955 kb on + strand, within MPMX19_04065 at 370.955 kb on + strand, within MPMX19_04065 at 370.956 kb on - strand, within MPMX19_04065 at 370.956 kb on - strand, within MPMX19_04065 at 370.956 kb on - strand, within MPMX19_04065 at 370.956 kb on - strand, within MPMX19_04065 at 370.956 kb on - strand, within MPMX19_04065 at 370.956 kb on - strand, within MPMX19_04065 at 370.956 kb on - strand, within MPMX19_04065 at 370.956 kb on - strand, within MPMX19_04065 at 371.018 kb on + strand, within MPMX19_04065 at 371.019 kb on - strand, within MPMX19_04065 at 371.019 kb on - strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.108 kb on + strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.109 kb on - strand, within MPMX19_04065 at 371.147 kb on + strand, within MPMX19_04065 at 371.147 kb on + strand, within MPMX19_04065 at 371.148 kb on - strand, within MPMX19_04065 at 371.201 kb on + strand, within MPMX19_04065 at 371.201 kb on + strand, within MPMX19_04065 at 371.202 kb on - strand, within MPMX19_04065 at 371.202 kb on - strand, within MPMX19_04065 at 371.202 kb on - strand, within MPMX19_04065 at 371.202 kb on - strand, within MPMX19_04065 at 371.202 kb on - strand, within MPMX19_04065 at 371.202 kb on - strand, within MPMX19_04065 at 371.417 kb on + strand at 371.417 kb on + strand at 371.417 kb on + strand at 371.417 kb on + strand at 371.417 kb on + strand at 371.417 kb on + strand at 371.417 kb on + strand at 371.417 kb on + strand at 371.418 kb on - strand at 371.418 kb on - strand at 371.418 kb on - strand at 371.418 kb on - strand at 371.418 kb on - strand at 371.418 kb on - strand at 371.418 kb on - strand at 371.418 kb on - strand at 371.546 kb on + strand at 371.546 kb on + strand at 371.546 kb on + strand at 371.602 kb on + strand at 371.602 kb on + strand at 371.602 kb on + strand at 371.602 kb on + strand at 371.602 kb on + strand at 371.603 kb on - strand at 371.603 kb on - strand at 371.603 kb on - strand at 371.603 kb on - strand at 371.615 kb on + strand at 371.615 kb on + strand at 371.616 kb on - strand at 371.622 kb on + strand at 371.622 kb on + strand at 371.622 kb on + strand at 371.623 kb on - strand at 371.623 kb on - strand at 371.623 kb on - strand at 371.667 kb on + strand at 371.667 kb on + strand at 371.667 kb on + strand at 371.667 kb on + strand at 371.668 kb on - strand at 371.668 kb on - strand at 371.668 kb on - strand at 371.944 kb on + strand, within MPMX19_04066 at 371.944 kb on + strand, within MPMX19_04066 at 371.944 kb on + strand, within MPMX19_04066 at 371.944 kb on + strand, within MPMX19_04066 at 371.944 kb on + strand, within MPMX19_04066 at 371.945 kb on - strand, within MPMX19_04066 at 371.945 kb on - strand, within MPMX19_04066 at 371.945 kb on - strand, within MPMX19_04066 at 371.945 kb on - strand, within MPMX19_04066 at 371.945 kb on - strand, within MPMX19_04066 at 371.945 kb on - strand, within MPMX19_04066 at 371.987 kb on + strand, within MPMX19_04066 at 371.987 kb on + strand, within MPMX19_04066 at 371.987 kb on + strand, within MPMX19_04066 at 371.987 kb on + strand, within MPMX19_04066 at 371.987 kb on + strand, within MPMX19_04066 at 371.987 kb on + strand, within MPMX19_04066 at 371.987 kb on + strand, within MPMX19_04066 at 371.987 kb on + strand, within MPMX19_04066 at 371.988 kb on - strand, within MPMX19_04066 at 371.988 kb on - strand, within MPMX19_04066 at 371.988 kb on - strand, within MPMX19_04066 at 372.123 kb on + strand, within MPMX19_04066 at 372.123 kb on + strand, within MPMX19_04066 at 372.123 kb on + strand, within MPMX19_04066 at 372.124 kb on - strand, within MPMX19_04066 at 372.124 kb on - strand, within MPMX19_04066 at 372.124 kb on - strand, within MPMX19_04066 at 372.124 kb on - strand, within MPMX19_04066 at 372.124 kb on - strand, within MPMX19_04066 at 372.124 kb on - strand, within MPMX19_04066 at 372.124 kb on - strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.261 kb on + strand, within MPMX19_04066 at 372.262 kb on - strand, within MPMX19_04066 at 372.262 kb on - strand, within MPMX19_04066 at 372.262 kb on - strand, within MPMX19_04066 at 372.262 kb on - strand, within MPMX19_04066 at 372.262 kb on - strand, within MPMX19_04066 at 372.262 kb on - strand, within MPMX19_04066 at 372.262 kb on - strand, within MPMX19_04066 at 372.262 kb on - strand, within MPMX19_04066 at 372.262 kb on - strand, within MPMX19_04066
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 369,705 + MPMX19_04064 0.55 +0.2 369,705 + MPMX19_04064 0.55 +0.3 369,705 + MPMX19_04064 0.55 -1.1 369,705 + MPMX19_04064 0.55 -1.3 369,706 - MPMX19_04064 0.55 +2.0 369,728 + MPMX19_04064 0.56 -0.0 369,729 - MPMX19_04064 0.56 +1.0 369,729 - MPMX19_04064 0.56 -1.0 369,729 - MPMX19_04064 0.56 -2.0 370,259 + MPMX19_04064 0.86 -1.0 370,260 - MPMX19_04064 0.86 -0.5 370,507 + -1.2 370,507 + -0.6 370,507 + -1.6 370,507 + -1.6 370,507 + -1.0 370,507 + -1.0 370,507 + -0.8 370,595 + -1.0 370,595 + +1.0 370,595 + +1.0 370,850 + MPMX19_04065 0.33 -0.3 370,850 + MPMX19_04065 0.33 -0.2 370,850 + MPMX19_04065 0.33 +0.4 370,850 + MPMX19_04065 0.33 +0.1 370,851 - MPMX19_04065 0.33 +1.5 370,851 - MPMX19_04065 0.33 -0.2 370,851 - MPMX19_04065 0.33 +1.0 370,851 - MPMX19_04065 0.33 -1.6 370,851 - MPMX19_04065 0.33 +0.8 370,868 + MPMX19_04065 0.35 +0.6 370,952 + MPMX19_04065 0.43 -1.6 370,952 + MPMX19_04065 0.43 -0.8 370,952 + MPMX19_04065 0.43 -1.3 370,952 + MPMX19_04065 0.43 -0.0 370,952 + MPMX19_04065 0.43 -1.4 370,952 + MPMX19_04065 0.43 +0.2 370,953 - MPMX19_04065 0.43 -1.0 370,953 - MPMX19_04065 0.43 -0.2 370,953 - MPMX19_04065 0.43 -2.8 370,953 - MPMX19_04065 0.43 +0.3 370,953 - MPMX19_04065 0.43 -1.0 370,953 - MPMX19_04065 0.43 -0.5 370,953 - MPMX19_04065 0.43 +1.0 370,953 - MPMX19_04065 0.43 -2.2 370,955 + MPMX19_04065 0.44 -2.5 370,955 + MPMX19_04065 0.44 -0.3 370,955 + MPMX19_04065 0.44 -1.6 370,955 + MPMX19_04065 0.44 -1.2 370,955 + MPMX19_04065 0.44 +0.2 370,956 - MPMX19_04065 0.44 -0.0 370,956 - MPMX19_04065 0.44 -0.4 370,956 - MPMX19_04065 0.44 -1.3 370,956 - MPMX19_04065 0.44 -0.2 370,956 - MPMX19_04065 0.44 -0.6 370,956 - MPMX19_04065 0.44 -0.2 370,956 - MPMX19_04065 0.44 -1.8 370,956 - MPMX19_04065 0.44 -1.5 371,018 + MPMX19_04065 0.50 -1.3 371,019 - MPMX19_04065 0.50 +0.4 371,019 - MPMX19_04065 0.50 -1.3 371,108 + MPMX19_04065 0.59 +0.6 371,108 + MPMX19_04065 0.59 -0.8 371,108 + MPMX19_04065 0.59 -1.4 371,108 + MPMX19_04065 0.59 +0.6 371,108 + MPMX19_04065 0.59 -1.1 371,108 + MPMX19_04065 0.59 +0.5 371,108 + MPMX19_04065 0.59 -0.8 371,108 + MPMX19_04065 0.59 -1.0 371,108 + MPMX19_04065 0.59 -0.5 371,108 + MPMX19_04065 0.59 +0.5 371,109 - MPMX19_04065 0.59 -0.8 371,109 - MPMX19_04065 0.59 -1.3 371,109 - MPMX19_04065 0.59 +1.3 371,109 - MPMX19_04065 0.59 -0.6 371,109 - MPMX19_04065 0.59 -0.3 371,109 - MPMX19_04065 0.59 -1.6 371,109 - MPMX19_04065 0.59 -2.2 371,109 - MPMX19_04065 0.59 -0.6 371,109 - MPMX19_04065 0.59 -1.0 371,109 - MPMX19_04065 0.59 -1.0 371,147 + MPMX19_04065 0.63 -0.6 371,147 + MPMX19_04065 0.63 -1.4 371,148 - MPMX19_04065 0.63 +0.2 371,201 + MPMX19_04065 0.68 -0.6 371,201 + MPMX19_04065 0.68 +0.7 371,202 - MPMX19_04065 0.69 -0.0 371,202 - MPMX19_04065 0.69 -0.0 371,202 - MPMX19_04065 0.69 -0.6 371,202 - MPMX19_04065 0.69 +0.4 371,202 - MPMX19_04065 0.69 +0.4 371,202 - MPMX19_04065 0.69 +1.6 371,417 + -0.6 371,417 + -1.0 371,417 + -0.7 371,417 + -0.7 371,417 + -1.2 371,417 + +0.7 371,417 + -1.2 371,417 + -0.3 371,418 - -0.6 371,418 - -3.3 371,418 - -2.0 371,418 - +1.0 371,418 - +1.6 371,418 - +1.0 371,418 - -0.3 371,418 - -0.1 371,546 + -1.3 371,546 + -0.6 371,546 + -0.9 371,602 + +1.0 371,602 + -0.0 371,602 + -0.9 371,602 + +2.0 371,602 + +1.0 371,603 - -1.7 371,603 - -1.0 371,603 - -0.9 371,603 - -0.3 371,615 + -0.8 371,615 + +0.2 371,616 - -0.9 371,622 + -0.2 371,622 + -2.6 371,622 + +0.2 371,623 - -0.1 371,623 - +0.4 371,623 - +0.6 371,667 + +0.1 371,667 + +0.4 371,667 + -0.3 371,667 + -0.6 371,668 - +0.2 371,668 - -0.4 371,668 - -1.5 371,944 + MPMX19_04066 0.39 -1.0 371,944 + MPMX19_04066 0.39 +0.2 371,944 + MPMX19_04066 0.39 -0.9 371,944 + MPMX19_04066 0.39 +0.7 371,944 + MPMX19_04066 0.39 -0.6 371,945 - MPMX19_04066 0.40 +0.2 371,945 - MPMX19_04066 0.40 +0.3 371,945 - MPMX19_04066 0.40 -0.0 371,945 - MPMX19_04066 0.40 -0.6 371,945 - MPMX19_04066 0.40 -0.4 371,945 - MPMX19_04066 0.40 -0.8 371,987 + MPMX19_04066 0.45 +0.8 371,987 + MPMX19_04066 0.45 +2.0 371,987 + MPMX19_04066 0.45 -1.5 371,987 + MPMX19_04066 0.45 -0.6 371,987 + MPMX19_04066 0.45 +0.4 371,987 + MPMX19_04066 0.45 +1.7 371,987 + MPMX19_04066 0.45 -0.3 371,987 + MPMX19_04066 0.45 -1.0 371,988 - MPMX19_04066 0.45 -2.7 371,988 - MPMX19_04066 0.45 -0.1 371,988 - MPMX19_04066 0.45 -0.3 372,123 + MPMX19_04066 0.61 -1.0 372,123 + MPMX19_04066 0.61 -1.0 372,123 + MPMX19_04066 0.61 +2.0 372,124 - MPMX19_04066 0.61 -0.6 372,124 - MPMX19_04066 0.61 -0.5 372,124 - MPMX19_04066 0.61 +0.4 372,124 - MPMX19_04066 0.61 -0.3 372,124 - MPMX19_04066 0.61 +0.4 372,124 - MPMX19_04066 0.61 +1.0 372,124 - MPMX19_04066 0.61 -0.6 372,261 + MPMX19_04066 0.78 -0.0 372,261 + MPMX19_04066 0.78 -0.0 372,261 + MPMX19_04066 0.78 -0.8 372,261 + MPMX19_04066 0.78 -0.3 372,261 + MPMX19_04066 0.78 +0.5 372,261 + MPMX19_04066 0.78 +0.4 372,261 + MPMX19_04066 0.78 +1.0 372,261 + MPMX19_04066 0.78 +0.7 372,261 + MPMX19_04066 0.78 -0.4 372,261 + MPMX19_04066 0.78 +0.6 372,261 + MPMX19_04066 0.78 +0.7 372,261 + MPMX19_04066 0.78 +0.2 372,261 + MPMX19_04066 0.78 +1.0 372,261 + MPMX19_04066 0.78 -0.4 372,261 + MPMX19_04066 0.78 -1.0 372,262 - MPMX19_04066 0.78 -0.3 372,262 - MPMX19_04066 0.78 -1.2 372,262 - MPMX19_04066 0.78 -1.2 372,262 - MPMX19_04066 0.78 -0.3 372,262 - MPMX19_04066 0.78 -0.6 372,262 - MPMX19_04066 0.78 +2.4 372,262 - MPMX19_04066 0.78 -1.9 372,262 - MPMX19_04066 0.78 +0.5 372,262 - MPMX19_04066 0.78 +1.6
Or see this region's nucleotide sequence