Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03837 and MPMX19_03838 are separated by 12 nucleotides MPMX19_03838 and MPMX19_03839 are separated by 326 nucleotides
MPMX19_03837: MPMX19_03837 - HTH-type transcriptional regulator PgrR, at 75,173 to 76,072
_03837
MPMX19_03838: MPMX19_03838 - Hercynine oxygenase, at 76,085 to 77,080
_03838
MPMX19_03839: MPMX19_03839 - hypothetical protein, at 77,407 to 78,225
_03839
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1
2 at 75.130 kb on + strand at 75.130 kb on + strand at 75.131 kb on - strand at 75.131 kb on - strand at 75.173 kb on - strand at 75.173 kb on - strand at 75.398 kb on + strand, within MPMX19_03837 at 75.398 kb on + strand, within MPMX19_03837 at 75.398 kb on + strand, within MPMX19_03837 at 75.399 kb on - strand, within MPMX19_03837 at 75.680 kb on + strand, within MPMX19_03837 at 75.681 kb on - strand, within MPMX19_03837 at 75.681 kb on - strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 76.113 kb on + strand at 76.113 kb on + strand at 76.113 kb on + strand at 76.122 kb on + strand at 76.122 kb on + strand at 76.122 kb on + strand at 76.122 kb on + strand at 76.123 kb on - strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.168 kb on - strand at 76.168 kb on - strand at 76.168 kb on - strand at 76.168 kb on - strand at 76.284 kb on + strand, within MPMX19_03838 at 76.284 kb on + strand, within MPMX19_03838 at 76.284 kb on + strand, within MPMX19_03838 at 76.284 kb on + strand, within MPMX19_03838 at 76.284 kb on + strand, within MPMX19_03838 at 76.285 kb on - strand, within MPMX19_03838 at 76.285 kb on - strand, within MPMX19_03838 at 76.285 kb on - strand, within MPMX19_03838 at 76.308 kb on + strand, within MPMX19_03838 at 76.309 kb on - strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.474 kb on - strand, within MPMX19_03838 at 76.474 kb on - strand, within MPMX19_03838 at 76.503 kb on + strand, within MPMX19_03838 at 76.503 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.554 kb on + strand, within MPMX19_03838 at 76.555 kb on - strand, within MPMX19_03838 at 76.654 kb on - strand, within MPMX19_03838 at 76.654 kb on - strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.708 kb on - strand, within MPMX19_03838 at 76.708 kb on - strand, within MPMX19_03838 at 76.708 kb on - strand, within MPMX19_03838 at 76.708 kb on - strand, within MPMX19_03838 at 76.728 kb on + strand, within MPMX19_03838 at 76.728 kb on + strand, within MPMX19_03838 at 76.728 kb on + strand, within MPMX19_03838 at 76.729 kb on - strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 77.166 kb on + strand at 77.166 kb on + strand at 77.191 kb on + strand at 77.191 kb on + strand at 77.191 kb on + strand at 77.191 kb on + strand at 77.192 kb on - strand at 77.192 kb on - strand at 77.192 kb on - strand at 77.204 kb on + strand at 77.204 kb on + strand at 77.205 kb on - strand at 77.205 kb on - strand at 77.368 kb on + strand at 77.369 kb on - strand at 77.369 kb on - strand at 77.369 kb on - strand at 77.476 kb on + strand at 77.476 kb on + strand at 77.476 kb on + strand at 77.476 kb on + strand at 77.477 kb on - strand at 77.477 kb on - strand at 77.477 kb on - strand at 77.477 kb on - strand at 77.477 kb on - strand at 77.477 kb on - strand at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.491 kb on + strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.492 kb on - strand, within MPMX19_03839 at 77.724 kb on + strand, within MPMX19_03839 at 77.725 kb on - strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.740 kb on + strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.741 kb on - strand, within MPMX19_03839 at 77.860 kb on + strand, within MPMX19_03839 at 77.860 kb on + strand, within MPMX19_03839 at 77.860 kb on + strand, within MPMX19_03839 at 77.861 kb on - strand, within MPMX19_03839 at 77.861 kb on - strand, within MPMX19_03839
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 75,130 + +0.9 75,130 + +0.1 75,131 - -0.2 75,131 - -0.0 75,173 - +0.1 75,173 - -0.1 75,398 + MPMX19_03837 0.25 +0.1 75,398 + MPMX19_03837 0.25 -0.4 75,398 + MPMX19_03837 0.25 +0.6 75,399 - MPMX19_03837 0.25 +0.5 75,680 + MPMX19_03837 0.56 +0.9 75,681 - MPMX19_03837 0.56 -0.7 75,681 - MPMX19_03837 0.56 +0.1 75,893 + MPMX19_03837 0.80 +0.2 75,893 + MPMX19_03837 0.80 +0.2 75,893 + MPMX19_03837 0.80 +0.1 75,893 + MPMX19_03837 0.80 +0.5 75,893 + MPMX19_03837 0.80 +0.9 75,893 + MPMX19_03837 0.80 -1.7 75,894 - MPMX19_03837 0.80 -0.3 75,894 - MPMX19_03837 0.80 +0.2 75,894 - MPMX19_03837 0.80 +0.3 75,894 - MPMX19_03837 0.80 -0.3 75,894 - MPMX19_03837 0.80 +0.9 76,113 + -1.8 76,113 + +0.9 76,113 + -0.6 76,122 + -2.4 76,122 + +0.3 76,122 + -1.4 76,122 + -1.1 76,123 - -0.6 76,167 + -1.0 76,167 + -1.1 76,167 + -1.1 76,167 + -0.4 76,167 + +1.2 76,167 + -0.1 76,167 + -0.6 76,167 + +0.3 76,167 + -1.3 76,167 + -0.7 76,167 + +1.5 76,167 + +0.3 76,168 - +0.9 76,168 - +0.9 76,168 - -0.1 76,168 - +1.3 76,284 + MPMX19_03838 0.20 -1.7 76,284 + MPMX19_03838 0.20 -0.3 76,284 + MPMX19_03838 0.20 +0.5 76,284 + MPMX19_03838 0.20 -0.2 76,284 + MPMX19_03838 0.20 +1.1 76,285 - MPMX19_03838 0.20 +1.0 76,285 - MPMX19_03838 0.20 +0.1 76,285 - MPMX19_03838 0.20 +0.6 76,308 + MPMX19_03838 0.22 -0.4 76,309 - MPMX19_03838 0.22 +0.4 76,473 + MPMX19_03838 0.39 -0.4 76,473 + MPMX19_03838 0.39 -0.9 76,473 + MPMX19_03838 0.39 +1.6 76,473 + MPMX19_03838 0.39 -0.1 76,473 + MPMX19_03838 0.39 +0.9 76,473 + MPMX19_03838 0.39 +0.3 76,474 - MPMX19_03838 0.39 +0.3 76,474 - MPMX19_03838 0.39 +0.1 76,503 + MPMX19_03838 0.42 +1.9 76,503 + MPMX19_03838 0.42 -0.4 76,539 + MPMX19_03838 0.46 -0.4 76,539 + MPMX19_03838 0.46 -0.1 76,539 + MPMX19_03838 0.46 -0.5 76,539 + MPMX19_03838 0.46 +0.3 76,539 + MPMX19_03838 0.46 +0.4 76,539 + MPMX19_03838 0.46 +0.2 76,539 + MPMX19_03838 0.46 +0.5 76,539 + MPMX19_03838 0.46 -0.9 76,539 + MPMX19_03838 0.46 -0.1 76,539 + MPMX19_03838 0.46 -0.1 76,539 + MPMX19_03838 0.46 +0.9 76,539 + MPMX19_03838 0.46 -0.1 76,539 + MPMX19_03838 0.46 -1.1 76,539 + MPMX19_03838 0.46 -0.1 76,539 + MPMX19_03838 0.46 -1.1 76,539 + MPMX19_03838 0.46 -0.4 76,539 + MPMX19_03838 0.46 +0.3 76,539 + MPMX19_03838 0.46 -1.1 76,539 + MPMX19_03838 0.46 -0.1 76,539 + MPMX19_03838 0.46 +1.1 76,539 + MPMX19_03838 0.46 +0.6 76,539 + MPMX19_03838 0.46 -0.1 76,539 + MPMX19_03838 0.46 -0.7 76,539 + MPMX19_03838 0.46 +0.4 76,539 + MPMX19_03838 0.46 +0.4 76,539 + MPMX19_03838 0.46 +0.5 76,539 + MPMX19_03838 0.46 +0.0 76,540 - MPMX19_03838 0.46 +1.3 76,540 - MPMX19_03838 0.46 +0.1 76,540 - MPMX19_03838 0.46 -1.0 76,540 - MPMX19_03838 0.46 -0.1 76,540 - MPMX19_03838 0.46 +1.9 76,540 - MPMX19_03838 0.46 -1.9 76,540 - MPMX19_03838 0.46 +0.5 76,540 - MPMX19_03838 0.46 -1.1 76,540 - MPMX19_03838 0.46 +0.4 76,540 - MPMX19_03838 0.46 +0.9 76,540 - MPMX19_03838 0.46 -0.8 76,540 - MPMX19_03838 0.46 +0.4 76,540 - MPMX19_03838 0.46 -1.0 76,540 - MPMX19_03838 0.46 +1.1 76,554 + MPMX19_03838 0.47 +0.1 76,555 - MPMX19_03838 0.47 +0.6 76,654 - MPMX19_03838 0.57 -1.3 76,654 - MPMX19_03838 0.57 -0.1 76,707 + MPMX19_03838 0.62 -0.8 76,707 + MPMX19_03838 0.62 -0.7 76,707 + MPMX19_03838 0.62 -0.8 76,707 + MPMX19_03838 0.62 -1.1 76,707 + MPMX19_03838 0.62 -1.1 76,707 + MPMX19_03838 0.62 -0.1 76,707 + MPMX19_03838 0.62 -0.4 76,708 - MPMX19_03838 0.63 -0.1 76,708 - MPMX19_03838 0.63 +0.7 76,708 - MPMX19_03838 0.63 -1.3 76,708 - MPMX19_03838 0.63 -0.9 76,728 + MPMX19_03838 0.65 +0.4 76,728 + MPMX19_03838 0.65 +0.6 76,728 + MPMX19_03838 0.65 -0.9 76,729 - MPMX19_03838 0.65 -1.2 76,824 + MPMX19_03838 0.74 +0.1 76,824 + MPMX19_03838 0.74 +0.5 76,824 + MPMX19_03838 0.74 -0.7 76,824 + MPMX19_03838 0.74 +0.4 76,824 + MPMX19_03838 0.74 -0.7 76,824 + MPMX19_03838 0.74 -0.3 76,824 + MPMX19_03838 0.74 -0.1 76,824 + MPMX19_03838 0.74 -0.4 76,824 + MPMX19_03838 0.74 +0.5 76,825 - MPMX19_03838 0.74 +0.4 76,825 - MPMX19_03838 0.74 -0.7 76,825 - MPMX19_03838 0.74 +0.9 76,825 - MPMX19_03838 0.74 -0.1 76,825 - MPMX19_03838 0.74 +1.6 76,825 - MPMX19_03838 0.74 -0.6 77,166 + -0.4 77,166 + -1.9 77,191 + -1.7 77,191 + +0.3 77,191 + -0.7 77,191 + +0.1 77,192 - -0.1 77,192 - +0.7 77,192 - +0.6 77,204 + +0.0 77,204 + -0.3 77,205 - +0.6 77,205 - -0.2 77,368 + -0.1 77,369 - -0.2 77,369 - +0.6 77,369 - +0.9 77,476 + +0.5 77,476 + -0.4 77,476 + +0.7 77,476 + -1.0 77,477 - -0.8 77,477 - -0.7 77,477 - -0.1 77,477 - -0.7 77,477 - +0.6 77,477 - -0.8 77,491 + MPMX19_03839 0.10 -1.5 77,491 + MPMX19_03839 0.10 +0.7 77,491 + MPMX19_03839 0.10 -0.1 77,491 + MPMX19_03839 0.10 -0.9 77,491 + MPMX19_03839 0.10 -1.7 77,491 + MPMX19_03839 0.10 -0.4 77,491 + MPMX19_03839 0.10 -0.3 77,491 + MPMX19_03839 0.10 -0.9 77,491 + MPMX19_03839 0.10 -0.1 77,491 + MPMX19_03839 0.10 +1.9 77,491 + MPMX19_03839 0.10 -0.0 77,491 + MPMX19_03839 0.10 -1.4 77,491 + MPMX19_03839 0.10 +1.3 77,491 + MPMX19_03839 0.10 -0.7 77,491 + MPMX19_03839 0.10 +1.2 77,492 - MPMX19_03839 0.10 +0.9 77,492 - MPMX19_03839 0.10 +0.3 77,492 - MPMX19_03839 0.10 -0.1 77,492 - MPMX19_03839 0.10 -0.4 77,492 - MPMX19_03839 0.10 -0.8 77,492 - MPMX19_03839 0.10 -1.2 77,492 - MPMX19_03839 0.10 -0.6 77,492 - MPMX19_03839 0.10 -1.7 77,492 - MPMX19_03839 0.10 -0.1 77,492 - MPMX19_03839 0.10 +0.7 77,492 - MPMX19_03839 0.10 +1.3 77,492 - MPMX19_03839 0.10 -0.0 77,492 - MPMX19_03839 0.10 -1.1 77,492 - MPMX19_03839 0.10 +0.7 77,492 - MPMX19_03839 0.10 -0.3 77,492 - MPMX19_03839 0.10 +0.5 77,492 - MPMX19_03839 0.10 -0.4 77,492 - MPMX19_03839 0.10 -0.7 77,492 - MPMX19_03839 0.10 -0.6 77,492 - MPMX19_03839 0.10 -0.3 77,492 - MPMX19_03839 0.10 -0.1 77,492 - MPMX19_03839 0.10 -0.2 77,724 + MPMX19_03839 0.39 -1.4 77,725 - MPMX19_03839 0.39 +0.3 77,740 + MPMX19_03839 0.41 -1.4 77,740 + MPMX19_03839 0.41 -1.1 77,740 + MPMX19_03839 0.41 +1.3 77,740 + MPMX19_03839 0.41 -0.7 77,740 + MPMX19_03839 0.41 -1.3 77,740 + MPMX19_03839 0.41 +0.6 77,740 + MPMX19_03839 0.41 -0.3 77,740 + MPMX19_03839 0.41 -1.2 77,740 + MPMX19_03839 0.41 -0.3 77,740 + MPMX19_03839 0.41 +0.0 77,741 - MPMX19_03839 0.41 -0.6 77,741 - MPMX19_03839 0.41 +0.9 77,741 - MPMX19_03839 0.41 -0.5 77,741 - MPMX19_03839 0.41 +0.3 77,741 - MPMX19_03839 0.41 -1.4 77,741 - MPMX19_03839 0.41 +0.3 77,741 - MPMX19_03839 0.41 -0.7 77,741 - MPMX19_03839 0.41 +0.6 77,741 - MPMX19_03839 0.41 +0.0 77,741 - MPMX19_03839 0.41 +2.2 77,741 - MPMX19_03839 0.41 -0.9 77,741 - MPMX19_03839 0.41 -0.5 77,741 - MPMX19_03839 0.41 -0.3 77,860 + MPMX19_03839 0.55 +0.2 77,860 + MPMX19_03839 0.55 +2.2 77,860 + MPMX19_03839 0.55 +0.3 77,861 - MPMX19_03839 0.55 -0.4 77,861 - MPMX19_03839 0.55 +0.6
Or see this region's nucleotide sequence