Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03522 and MPMX19_03523 are separated by 96 nucleotides MPMX19_03523 and MPMX19_03524 are separated by 355 nucleotides
MPMX19_03522: MPMX19_03522 - Flavohemoprotein, at 940,368 to 942,467
_03522
MPMX19_03523: MPMX19_03523 - hypothetical protein, at 942,564 to 943,028
_03523
MPMX19_03524: MPMX19_03524 - hypothetical protein, at 943,384 to 945,315
_03524
Position (kb) 942
943
944 Strain fitness (log2 ratio) -2
-1
0
1
2 at 941.613 kb on - strand, within MPMX19_03522 at 941.751 kb on + strand, within MPMX19_03522 at 941.751 kb on + strand, within MPMX19_03522 at 941.751 kb on + strand, within MPMX19_03522 at 941.751 kb on + strand, within MPMX19_03522 at 941.751 kb on + strand, within MPMX19_03522 at 941.752 kb on - strand, within MPMX19_03522 at 941.955 kb on + strand, within MPMX19_03522 at 941.955 kb on + strand, within MPMX19_03522 at 941.955 kb on + strand, within MPMX19_03522 at 941.955 kb on + strand, within MPMX19_03522 at 941.956 kb on - strand, within MPMX19_03522 at 941.956 kb on - strand, within MPMX19_03522 at 941.956 kb on - strand, within MPMX19_03522 at 941.956 kb on - strand, within MPMX19_03522 at 941.956 kb on - strand, within MPMX19_03522 at 941.956 kb on - strand, within MPMX19_03522 at 942.015 kb on + strand, within MPMX19_03522 at 942.015 kb on + strand, within MPMX19_03522 at 942.015 kb on + strand, within MPMX19_03522 at 942.015 kb on + strand, within MPMX19_03522 at 942.016 kb on - strand, within MPMX19_03522 at 942.024 kb on + strand, within MPMX19_03522 at 942.024 kb on + strand, within MPMX19_03522 at 942.024 kb on + strand, within MPMX19_03522 at 942.025 kb on - strand, within MPMX19_03522 at 942.025 kb on - strand, within MPMX19_03522 at 942.060 kb on + strand, within MPMX19_03522 at 942.060 kb on + strand, within MPMX19_03522 at 942.060 kb on + strand, within MPMX19_03522 at 942.060 kb on + strand, within MPMX19_03522 at 942.061 kb on - strand, within MPMX19_03522 at 942.061 kb on - strand, within MPMX19_03522 at 942.294 kb on + strand at 942.295 kb on - strand at 942.295 kb on - strand at 942.295 kb on - strand at 942.295 kb on - strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.357 kb on + strand at 942.358 kb on - strand at 942.358 kb on - strand at 942.358 kb on - strand at 942.358 kb on - strand at 942.358 kb on - strand at 942.358 kb on - strand at 942.358 kb on - strand at 942.358 kb on - strand at 942.358 kb on - strand at 942.534 kb on - strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.560 kb on - strand at 942.560 kb on - strand at 942.673 kb on - strand, within MPMX19_03523 at 942.673 kb on - strand, within MPMX19_03523 at 942.674 kb on + strand, within MPMX19_03523 at 942.674 kb on + strand, within MPMX19_03523 at 942.675 kb on - strand, within MPMX19_03523 at 942.675 kb on - strand, within MPMX19_03523 at 942.826 kb on - strand, within MPMX19_03523 at 942.826 kb on - strand, within MPMX19_03523 at 942.831 kb on + strand, within MPMX19_03523 at 942.831 kb on + strand, within MPMX19_03523 at 942.832 kb on - strand, within MPMX19_03523 at 942.832 kb on - strand, within MPMX19_03523 at 942.861 kb on + strand, within MPMX19_03523 at 942.862 kb on - strand, within MPMX19_03523 at 943.124 kb on - strand at 943.137 kb on + strand at 943.137 kb on + strand at 943.137 kb on + strand at 943.138 kb on - strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.164 kb on - strand at 943.164 kb on - strand at 943.164 kb on - strand at 943.164 kb on - strand at 943.199 kb on - strand at 943.215 kb on + strand at 943.243 kb on + strand at 943.244 kb on - strand at 943.354 kb on - strand at 943.354 kb on - strand at 943.354 kb on - strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.402 kb on - strand at 943.801 kb on + strand, within MPMX19_03524 at 943.802 kb on - strand, within MPMX19_03524
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 941,613 - MPMX19_03522 0.59 +0.2 941,751 + MPMX19_03522 0.66 -0.1 941,751 + MPMX19_03522 0.66 +0.8 941,751 + MPMX19_03522 0.66 +0.6 941,751 + MPMX19_03522 0.66 -0.6 941,751 + MPMX19_03522 0.66 -1.0 941,752 - MPMX19_03522 0.66 +0.5 941,955 + MPMX19_03522 0.76 -2.4 941,955 + MPMX19_03522 0.76 -0.1 941,955 + MPMX19_03522 0.76 +1.2 941,955 + MPMX19_03522 0.76 +0.6 941,956 - MPMX19_03522 0.76 -0.0 941,956 - MPMX19_03522 0.76 -0.2 941,956 - MPMX19_03522 0.76 -0.1 941,956 - MPMX19_03522 0.76 -1.8 941,956 - MPMX19_03522 0.76 +0.2 941,956 - MPMX19_03522 0.76 -0.3 942,015 + MPMX19_03522 0.78 -1.1 942,015 + MPMX19_03522 0.78 +0.1 942,015 + MPMX19_03522 0.78 +1.2 942,015 + MPMX19_03522 0.78 +1.5 942,016 - MPMX19_03522 0.78 +0.4 942,024 + MPMX19_03522 0.79 -0.8 942,024 + MPMX19_03522 0.79 -0.3 942,024 + MPMX19_03522 0.79 +2.2 942,025 - MPMX19_03522 0.79 -1.9 942,025 - MPMX19_03522 0.79 +0.2 942,060 + MPMX19_03522 0.81 +1.4 942,060 + MPMX19_03522 0.81 +0.3 942,060 + MPMX19_03522 0.81 -0.1 942,060 + MPMX19_03522 0.81 +0.6 942,061 - MPMX19_03522 0.81 -0.1 942,061 - MPMX19_03522 0.81 -0.2 942,294 + +0.6 942,295 - -0.4 942,295 - -0.6 942,295 - +0.2 942,295 - +1.6 942,357 + +0.1 942,357 + +1.2 942,357 + +0.8 942,357 + -1.1 942,357 + -2.1 942,357 + -0.2 942,357 + -0.4 942,357 + -1.7 942,357 + -0.2 942,357 + +0.6 942,357 + +0.6 942,357 + +0.2 942,357 + -1.1 942,357 + +0.2 942,357 + -0.6 942,357 + -0.6 942,357 + +0.2 942,357 + +1.0 942,357 + -0.9 942,357 + +0.9 942,357 + +0.7 942,357 + -0.1 942,358 - -0.1 942,358 - -0.6 942,358 - -0.4 942,358 - -0.5 942,358 - -1.1 942,358 - +0.5 942,358 - -0.2 942,358 - +0.1 942,358 - -0.9 942,534 - -1.1 942,559 + +1.2 942,559 + -1.1 942,559 + +0.2 942,559 + -1.6 942,559 + +1.2 942,559 + -0.4 942,560 - -2.5 942,560 - -0.1 942,673 - MPMX19_03523 0.23 -2.1 942,673 - MPMX19_03523 0.23 +0.0 942,674 + MPMX19_03523 0.24 +0.6 942,674 + MPMX19_03523 0.24 +0.0 942,675 - MPMX19_03523 0.24 +0.2 942,675 - MPMX19_03523 0.24 -1.4 942,826 - MPMX19_03523 0.56 -0.2 942,826 - MPMX19_03523 0.56 +0.1 942,831 + MPMX19_03523 0.57 +0.1 942,831 + MPMX19_03523 0.57 +0.0 942,832 - MPMX19_03523 0.58 +0.6 942,832 - MPMX19_03523 0.58 -0.4 942,861 + MPMX19_03523 0.64 -0.8 942,862 - MPMX19_03523 0.64 -0.8 943,124 - +0.5 943,137 + +0.2 943,137 + +0.1 943,137 + -0.4 943,138 - -0.4 943,163 + -2.1 943,163 + +0.5 943,163 + -0.4 943,163 + -1.2 943,163 + +0.2 943,164 - +0.1 943,164 - +0.2 943,164 - -0.1 943,164 - -1.3 943,199 - +0.8 943,215 + +0.0 943,243 + -1.6 943,244 - -1.1 943,354 - -1.2 943,354 - +0.4 943,354 - +1.2 943,401 + +1.2 943,401 + +0.8 943,402 - +0.2 943,801 + MPMX19_03524 0.22 -0.8 943,802 - MPMX19_03524 0.22 -0.6
Or see this region's nucleotide sequence