Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03267

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03265 and MPMX19_03266 are separated by 75 nucleotidesMPMX19_03266 and MPMX19_03267 are separated by 47 nucleotidesMPMX19_03267 and MPMX19_03268 are separated by 18 nucleotides MPMX19_03265: MPMX19_03265 - Spermidine/putrescine import ATP-binding protein PotA, at 608,227 to 609,399 _03265 MPMX19_03266: MPMX19_03266 - Inositol-1-monophosphatase, at 609,475 to 610,251 _03266 MPMX19_03267: MPMX19_03267 - Periplasmic AppA protein, at 610,299 to 611,651 _03267 MPMX19_03268: MPMX19_03268 - HTH-type transcriptional regulator DegA, at 611,670 to 612,731 _03268 Position (kb) 610 611 612Strain fitness (log2 ratio) -2 -1 0 1 2at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 610.066 kb on + strand, within MPMX19_03266at 610.066 kb on + strand, within MPMX19_03266at 610.066 kb on + strand, within MPMX19_03266at 610.067 kb on - strand, within MPMX19_03266at 610.067 kb on - strand, within MPMX19_03266at 610.566 kb on + strand, within MPMX19_03267at 610.567 kb on - strand, within MPMX19_03267at 610.567 kb on - strand, within MPMX19_03267at 610.594 kb on + strand, within MPMX19_03267at 610.845 kb on + strand, within MPMX19_03267at 610.845 kb on + strand, within MPMX19_03267at 610.846 kb on - strand, within MPMX19_03267at 610.846 kb on - strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.148 kb on + strand, within MPMX19_03267at 611.149 kb on - strand, within MPMX19_03267at 611.149 kb on - strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.324 kb on + strand, within MPMX19_03267at 611.324 kb on + strand, within MPMX19_03267at 611.324 kb on + strand, within MPMX19_03267at 611.324 kb on + strand, within MPMX19_03267at 611.325 kb on - strand, within MPMX19_03267at 611.325 kb on - strand, within MPMX19_03267at 611.439 kb on + strand, within MPMX19_03267at 611.439 kb on + strand, within MPMX19_03267at 611.439 kb on + strand, within MPMX19_03267at 611.440 kb on - strand, within MPMX19_03267at 611.440 kb on - strand, within MPMX19_03267at 611.440 kb on - strand, within MPMX19_03267at 611.440 kb on - strand, within MPMX19_03267at 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.671 kb on + strandat 611.803 kb on + strand, within MPMX19_03268at 611.929 kb on + strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 612.005 kb on - strand, within MPMX19_03268at 612.232 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.359 kb on - strand, within MPMX19_03268at 612.359 kb on - strand, within MPMX19_03268at 612.409 kb on + strand, within MPMX19_03268at 612.410 kb on - strand, within MPMX19_03268at 612.410 kb on - strand, within MPMX19_03268at 612.410 kb on - strand, within MPMX19_03268

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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609,739 + MPMX19_03266 0.34 +0.6
609,739 + MPMX19_03266 0.34 -1.0
609,739 + MPMX19_03266 0.34 +0.4
609,739 + MPMX19_03266 0.34 -0.7
609,739 + MPMX19_03266 0.34 -0.6
609,739 + MPMX19_03266 0.34 -1.4
609,740 - MPMX19_03266 0.34 +0.5
609,740 - MPMX19_03266 0.34 -1.4
609,740 - MPMX19_03266 0.34 -0.3
609,740 - MPMX19_03266 0.34 +1.6
609,740 - MPMX19_03266 0.34 -0.1
609,740 - MPMX19_03266 0.34 -0.9
609,740 - MPMX19_03266 0.34 +0.2
609,740 - MPMX19_03266 0.34 +1.2
609,740 - MPMX19_03266 0.34 -0.1
609,740 - MPMX19_03266 0.34 -0.4
609,740 - MPMX19_03266 0.34 -0.2
609,740 - MPMX19_03266 0.34 +0.5
609,740 - MPMX19_03266 0.34 -0.8
609,814 + MPMX19_03266 0.44 +0.9
609,814 + MPMX19_03266 0.44 +0.2
609,814 + MPMX19_03266 0.44 +2.5
609,814 + MPMX19_03266 0.44 +0.0
609,814 + MPMX19_03266 0.44 -0.0
609,814 + MPMX19_03266 0.44 +1.2
609,814 + MPMX19_03266 0.44 +1.2
609,814 + MPMX19_03266 0.44 +0.4
609,814 + MPMX19_03266 0.44 +0.1
609,814 + MPMX19_03266 0.44 -0.6
609,814 + MPMX19_03266 0.44 -0.2
609,815 - MPMX19_03266 0.44 -0.8
609,815 - MPMX19_03266 0.44 +0.2
609,815 - MPMX19_03266 0.44 -2.0
609,815 - MPMX19_03266 0.44 -0.8
609,815 - MPMX19_03266 0.44 -0.4
609,815 - MPMX19_03266 0.44 -0.4
609,815 - MPMX19_03266 0.44 -1.1
609,815 - MPMX19_03266 0.44 -0.6
610,066 + MPMX19_03266 0.76 +0.2
610,066 + MPMX19_03266 0.76 +0.9
610,066 + MPMX19_03266 0.76 -0.1
610,067 - MPMX19_03266 0.76 -0.1
610,067 - MPMX19_03266 0.76 +0.2
610,566 + MPMX19_03267 0.20 -0.0
610,567 - MPMX19_03267 0.20 -1.6
610,567 - MPMX19_03267 0.20 -0.8
610,594 + MPMX19_03267 0.22 +0.2
610,845 + MPMX19_03267 0.40 -1.6
610,845 + MPMX19_03267 0.40 +0.2
610,846 - MPMX19_03267 0.40 -0.8
610,846 - MPMX19_03267 0.40 +0.3
611,058 + MPMX19_03267 0.56 -1.1
611,058 + MPMX19_03267 0.56 -0.2
611,058 + MPMX19_03267 0.56 +0.8
611,058 + MPMX19_03267 0.56 -1.4
611,058 + MPMX19_03267 0.56 +1.4
611,058 + MPMX19_03267 0.56 -2.0
611,058 + MPMX19_03267 0.56 -2.0
611,058 + MPMX19_03267 0.56 +0.6
611,058 + MPMX19_03267 0.56 -0.8
611,058 + MPMX19_03267 0.56 -0.8
611,058 + MPMX19_03267 0.56 +2.2
611,059 - MPMX19_03267 0.56 +0.3
611,059 - MPMX19_03267 0.56 -2.1
611,059 - MPMX19_03267 0.56 +0.6
611,059 - MPMX19_03267 0.56 -1.1
611,060 + MPMX19_03267 0.56 +0.2
611,060 + MPMX19_03267 0.56 +0.8
611,060 + MPMX19_03267 0.56 -1.1
611,060 + MPMX19_03267 0.56 +0.2
611,060 + MPMX19_03267 0.56 -0.1
611,060 + MPMX19_03267 0.56 +0.3
611,060 + MPMX19_03267 0.56 +0.6
611,060 + MPMX19_03267 0.56 +1.4
611,060 + MPMX19_03267 0.56 -1.0
611,060 + MPMX19_03267 0.56 -1.6
611,060 + MPMX19_03267 0.56 +0.6
611,060 + MPMX19_03267 0.56 -0.3
611,060 + MPMX19_03267 0.56 -0.6
611,061 - MPMX19_03267 0.56 -1.2
611,061 - MPMX19_03267 0.56 -0.6
611,061 - MPMX19_03267 0.56 +0.5
611,061 - MPMX19_03267 0.56 -0.6
611,061 - MPMX19_03267 0.56 +0.0
611,061 - MPMX19_03267 0.56 +0.2
611,061 - MPMX19_03267 0.56 +0.4
611,061 - MPMX19_03267 0.56 -0.1
611,061 - MPMX19_03267 0.56 +0.0
611,061 - MPMX19_03267 0.56 -0.4
611,061 - MPMX19_03267 0.56 -0.4
611,061 - MPMX19_03267 0.56 -1.2
611,148 + MPMX19_03267 0.63 +0.9
611,149 - MPMX19_03267 0.63 +1.6
611,149 - MPMX19_03267 0.63 +0.3
611,172 + MPMX19_03267 0.65 +1.2
611,172 + MPMX19_03267 0.65 -1.6
611,172 + MPMX19_03267 0.65 -0.7
611,172 + MPMX19_03267 0.65 +0.5
611,172 + MPMX19_03267 0.65 +0.6
611,172 + MPMX19_03267 0.65 +0.5
611,172 + MPMX19_03267 0.65 +0.6
611,173 - MPMX19_03267 0.65 -0.6
611,173 - MPMX19_03267 0.65 +0.2
611,173 - MPMX19_03267 0.65 -1.8
611,173 - MPMX19_03267 0.65 -0.4
611,324 + MPMX19_03267 0.76 +1.2
611,324 + MPMX19_03267 0.76 +0.4
611,324 + MPMX19_03267 0.76 -2.1
611,324 + MPMX19_03267 0.76 +1.4
611,325 - MPMX19_03267 0.76 -0.8
611,325 - MPMX19_03267 0.76 -0.6
611,439 + MPMX19_03267 0.84 +0.9
611,439 + MPMX19_03267 0.84 -0.7
611,439 + MPMX19_03267 0.84 +0.7
611,440 - MPMX19_03267 0.84 -0.8
611,440 - MPMX19_03267 0.84 +0.5
611,440 - MPMX19_03267 0.84 -2.0
611,440 - MPMX19_03267 0.84 -0.8
611,640 + +1.2
611,640 + -1.4
611,640 + +1.9
611,640 + -0.6
611,640 + +0.6
611,640 + -1.4
611,640 + +1.2
611,640 + -1.1
611,640 + -0.8
611,640 + -0.4
611,640 + +0.4
611,641 - -1.0
611,641 - -0.0
611,641 - -0.1
611,641 - -1.4
611,641 - +0.2
611,641 - -0.3
611,671 + -1.1
611,803 + MPMX19_03268 0.13 -1.0
611,929 + MPMX19_03268 0.24 +0.6
611,930 - MPMX19_03268 0.24 +0.3
611,930 - MPMX19_03268 0.24 +1.0
611,930 - MPMX19_03268 0.24 -0.4
611,930 - MPMX19_03268 0.24 -0.8
612,005 - MPMX19_03268 0.32 -1.8
612,232 + MPMX19_03268 0.53 -0.1
612,358 + MPMX19_03268 0.65 -0.4
612,358 + MPMX19_03268 0.65 +1.5
612,358 + MPMX19_03268 0.65 -1.5
612,358 + MPMX19_03268 0.65 +0.4
612,359 - MPMX19_03268 0.65 -0.4
612,359 - MPMX19_03268 0.65 -0.2
612,409 + MPMX19_03268 0.70 -0.8
612,410 - MPMX19_03268 0.70 +0.8
612,410 - MPMX19_03268 0.70 +1.2
612,410 - MPMX19_03268 0.70 +0.6

Or see this region's nucleotide sequence