Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03260

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03258 and MPMX19_03259 overlap by 4 nucleotidesMPMX19_03259 and MPMX19_03260 are separated by 31 nucleotidesMPMX19_03260 and MPMX19_03261 are separated by 73 nucleotides MPMX19_03258: MPMX19_03258 - Glycine betaine/choline transport system permease protein OusW, at 599,479 to 600,351 _03258 MPMX19_03259: MPMX19_03259 - Glycine betaine transport system permease protein OpuAB, at 600,348 to 601,196 _03259 MPMX19_03260: MPMX19_03260 - HTH-type transcriptional regulator CdhR, at 601,228 to 602,280 _03260 MPMX19_03261: MPMX19_03261 - 4-hydroxyproline 2-epimerase 2, at 602,354 to 603,352 _03261 Position (kb) 601 602 603Strain fitness (log2 ratio) -2 -1 0 1 2 3at 600.334 kb on + strandat 600.334 kb on + strandat 600.335 kb on - strandat 600.501 kb on + strand, within MPMX19_03259at 600.502 kb on - strand, within MPMX19_03259at 600.556 kb on + strand, within MPMX19_03259at 600.591 kb on + strand, within MPMX19_03259at 600.591 kb on + strand, within MPMX19_03259at 600.591 kb on + strand, within MPMX19_03259at 600.592 kb on - strand, within MPMX19_03259at 600.592 kb on - strand, within MPMX19_03259at 600.592 kb on - strand, within MPMX19_03259at 600.592 kb on - strand, within MPMX19_03259at 600.765 kb on + strand, within MPMX19_03259at 600.765 kb on + strand, within MPMX19_03259at 600.765 kb on + strand, within MPMX19_03259at 600.766 kb on - strand, within MPMX19_03259at 600.766 kb on - strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.831 kb on + strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 600.832 kb on - strand, within MPMX19_03259at 601.535 kb on - strand, within MPMX19_03260at 601.535 kb on - strand, within MPMX19_03260at 601.597 kb on + strand, within MPMX19_03260at 601.597 kb on + strand, within MPMX19_03260at 601.597 kb on + strand, within MPMX19_03260at 601.598 kb on - strand, within MPMX19_03260at 601.598 kb on - strand, within MPMX19_03260at 601.598 kb on - strand, within MPMX19_03260at 601.598 kb on - strand, within MPMX19_03260at 601.708 kb on + strand, within MPMX19_03260at 601.708 kb on + strand, within MPMX19_03260at 601.708 kb on + strand, within MPMX19_03260at 601.709 kb on - strand, within MPMX19_03260at 601.709 kb on - strand, within MPMX19_03260at 601.881 kb on + strand, within MPMX19_03260at 601.881 kb on + strand, within MPMX19_03260at 601.881 kb on + strand, within MPMX19_03260at 601.882 kb on - strand, within MPMX19_03260at 601.882 kb on - strand, within MPMX19_03260at 601.882 kb on - strand, within MPMX19_03260at 601.882 kb on - strand, within MPMX19_03260at 602.122 kb on + strand, within MPMX19_03260at 602.122 kb on + strand, within MPMX19_03260at 602.122 kb on + strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.125 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.527 kb on + strand, within MPMX19_03261at 602.527 kb on + strand, within MPMX19_03261at 602.527 kb on + strand, within MPMX19_03261at 602.527 kb on + strand, within MPMX19_03261at 602.527 kb on + strand, within MPMX19_03261at 602.528 kb on - strand, within MPMX19_03261at 602.528 kb on - strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.550 kb on - strand, within MPMX19_03261at 602.550 kb on - strand, within MPMX19_03261at 602.550 kb on - strand, within MPMX19_03261at 602.732 kb on + strand, within MPMX19_03261at 602.732 kb on + strand, within MPMX19_03261at 602.732 kb on + strand, within MPMX19_03261at 602.733 kb on - strand, within MPMX19_03261at 602.733 kb on - strand, within MPMX19_03261at 602.733 kb on - strand, within MPMX19_03261at 602.786 kb on + strand, within MPMX19_03261at 602.786 kb on + strand, within MPMX19_03261at 602.786 kb on + strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.845 kb on + strand, within MPMX19_03261at 602.846 kb on - strand, within MPMX19_03261at 602.852 kb on + strand, within MPMX19_03261at 602.852 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.938 kb on - strand, within MPMX19_03261at 603.077 kb on + strand, within MPMX19_03261at 603.077 kb on + strand, within MPMX19_03261at 603.078 kb on - strand, within MPMX19_03261at 603.078 kb on - strand, within MPMX19_03261at 603.245 kb on + strand, within MPMX19_03261at 603.246 kb on - strand, within MPMX19_03261

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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600,334 + +0.8
600,334 + +0.6
600,335 - -0.8
600,501 + MPMX19_03259 0.18 +0.8
600,502 - MPMX19_03259 0.18 -1.1
600,556 + MPMX19_03259 0.24 +1.2
600,591 + MPMX19_03259 0.29 +0.4
600,591 + MPMX19_03259 0.29 +1.5
600,591 + MPMX19_03259 0.29 -0.1
600,592 - MPMX19_03259 0.29 -1.6
600,592 - MPMX19_03259 0.29 -0.4
600,592 - MPMX19_03259 0.29 +0.2
600,592 - MPMX19_03259 0.29 -1.4
600,765 + MPMX19_03259 0.49 -1.1
600,765 + MPMX19_03259 0.49 -0.6
600,765 + MPMX19_03259 0.49 -0.6
600,766 - MPMX19_03259 0.49 -0.1
600,766 - MPMX19_03259 0.49 -1.8
600,831 + MPMX19_03259 0.57 -0.4
600,831 + MPMX19_03259 0.57 -1.5
600,831 + MPMX19_03259 0.57 +0.1
600,831 + MPMX19_03259 0.57 -0.9
600,831 + MPMX19_03259 0.57 -0.7
600,832 - MPMX19_03259 0.57 -0.4
600,832 - MPMX19_03259 0.57 +0.6
600,832 - MPMX19_03259 0.57 +0.0
600,832 - MPMX19_03259 0.57 +0.6
600,832 - MPMX19_03259 0.57 +0.8
600,832 - MPMX19_03259 0.57 +0.0
600,832 - MPMX19_03259 0.57 +0.0
600,832 - MPMX19_03259 0.57 -0.8
601,535 - MPMX19_03260 0.29 -0.8
601,535 - MPMX19_03260 0.29 -1.8
601,597 + MPMX19_03260 0.35 -0.6
601,597 + MPMX19_03260 0.35 -0.7
601,597 + MPMX19_03260 0.35 +0.9
601,598 - MPMX19_03260 0.35 -1.3
601,598 - MPMX19_03260 0.35 +0.4
601,598 - MPMX19_03260 0.35 -1.1
601,598 - MPMX19_03260 0.35 -1.5
601,708 + MPMX19_03260 0.46 -0.1
601,708 + MPMX19_03260 0.46 -2.0
601,708 + MPMX19_03260 0.46 -2.4
601,709 - MPMX19_03260 0.46 +0.3
601,709 - MPMX19_03260 0.46 -1.6
601,881 + MPMX19_03260 0.62 -0.6
601,881 + MPMX19_03260 0.62 -0.6
601,881 + MPMX19_03260 0.62 -1.6
601,882 - MPMX19_03260 0.62 -0.4
601,882 - MPMX19_03260 0.62 +0.8
601,882 - MPMX19_03260 0.62 -1.1
601,882 - MPMX19_03260 0.62 +0.4
602,122 + MPMX19_03260 0.85 +0.9
602,122 + MPMX19_03260 0.85 +1.5
602,122 + MPMX19_03260 0.85 -0.8
602,123 - MPMX19_03260 0.85 -0.6
602,123 - MPMX19_03260 0.85 -1.0
602,123 - MPMX19_03260 0.85 -0.8
602,123 - MPMX19_03260 0.85 -0.8
602,123 - MPMX19_03260 0.85 -1.5
602,125 + MPMX19_03260 0.85 -1.6
602,146 + MPMX19_03260 0.87 -0.1
602,146 + MPMX19_03260 0.87 +1.2
602,146 + MPMX19_03260 0.87 -1.0
602,146 + MPMX19_03260 0.87 -0.8
602,146 + MPMX19_03260 0.87 -1.1
602,147 - MPMX19_03260 0.87 -0.8
602,147 - MPMX19_03260 0.87 -1.0
602,147 - MPMX19_03260 0.87 +1.6
602,147 - MPMX19_03260 0.87 -1.4
602,147 - MPMX19_03260 0.87 -0.4
602,527 + MPMX19_03261 0.17 -0.1
602,527 + MPMX19_03261 0.17 +0.4
602,527 + MPMX19_03261 0.17 +0.6
602,527 + MPMX19_03261 0.17 +0.0
602,527 + MPMX19_03261 0.17 -1.3
602,528 - MPMX19_03261 0.17 +1.8
602,528 - MPMX19_03261 0.17 +0.8
602,549 + MPMX19_03261 0.20 +0.4
602,549 + MPMX19_03261 0.20 -0.1
602,549 + MPMX19_03261 0.20 -0.4
602,549 + MPMX19_03261 0.20 -1.4
602,549 + MPMX19_03261 0.20 -0.8
602,550 - MPMX19_03261 0.20 -1.6
602,550 - MPMX19_03261 0.20 -0.6
602,550 - MPMX19_03261 0.20 +1.2
602,732 + MPMX19_03261 0.38 +0.2
602,732 + MPMX19_03261 0.38 -0.1
602,732 + MPMX19_03261 0.38 +1.9
602,733 - MPMX19_03261 0.38 +0.4
602,733 - MPMX19_03261 0.38 -1.0
602,733 - MPMX19_03261 0.38 +0.8
602,786 + MPMX19_03261 0.43 -1.6
602,786 + MPMX19_03261 0.43 +2.8
602,786 + MPMX19_03261 0.43 +0.0
602,787 - MPMX19_03261 0.43 -0.4
602,787 - MPMX19_03261 0.43 -1.6
602,787 - MPMX19_03261 0.43 +1.2
602,787 - MPMX19_03261 0.43 +0.8
602,845 + MPMX19_03261 0.49 -0.8
602,846 - MPMX19_03261 0.49 +1.2
602,852 + MPMX19_03261 0.50 -0.6
602,852 + MPMX19_03261 0.50 +0.4
602,864 + MPMX19_03261 0.51 -1.4
602,864 + MPMX19_03261 0.51 +1.2
602,864 + MPMX19_03261 0.51 -0.3
602,864 + MPMX19_03261 0.51 +0.4
602,865 - MPMX19_03261 0.51 -1.1
602,865 - MPMX19_03261 0.51 -0.6
602,865 - MPMX19_03261 0.51 +0.2
602,865 - MPMX19_03261 0.51 +1.1
602,867 + MPMX19_03261 0.51 -1.1
602,867 + MPMX19_03261 0.51 +1.5
602,867 + MPMX19_03261 0.51 +0.2
602,867 + MPMX19_03261 0.51 -1.4
602,867 + MPMX19_03261 0.51 -1.4
602,868 - MPMX19_03261 0.51 -0.2
602,868 - MPMX19_03261 0.51 -2.0
602,868 - MPMX19_03261 0.51 -0.1
602,868 - MPMX19_03261 0.51 +0.5
602,938 - MPMX19_03261 0.58 -0.6
603,077 + MPMX19_03261 0.72 -1.6
603,077 + MPMX19_03261 0.72 +0.9
603,078 - MPMX19_03261 0.72 -0.1
603,078 - MPMX19_03261 0.72 +0.6
603,245 + MPMX19_03261 0.89 -1.2
603,246 - MPMX19_03261 0.89 -0.4

Or see this region's nucleotide sequence