Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03232

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03231 and MPMX19_03232 are separated by 19 nucleotidesMPMX19_03232 and MPMX19_03233 are separated by 4 nucleotides MPMX19_03231: MPMX19_03231 - Ferrichrome outer membrane transporter/phage receptor, at 531,941 to 534,208 _03231 MPMX19_03232: MPMX19_03232 - Iron(3+)-hydroxamate-binding protein FhuD, at 534,228 to 535,151 _03232 MPMX19_03233: MPMX19_03233 - Iron(3+)-hydroxamate import system permease protein FhuB, at 535,156 to 537,150 _03233 Position (kb) 534 535 536Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 533.262 kb on - strand, within MPMX19_03231at 533.282 kb on + strand, within MPMX19_03231at 533.333 kb on + strand, within MPMX19_03231at 533.333 kb on + strand, within MPMX19_03231at 533.334 kb on - strand, within MPMX19_03231at 533.334 kb on - strand, within MPMX19_03231at 533.334 kb on - strand, within MPMX19_03231at 533.355 kb on - strand, within MPMX19_03231at 533.480 kb on + strand, within MPMX19_03231at 533.480 kb on + strand, within MPMX19_03231at 533.480 kb on + strand, within MPMX19_03231at 533.480 kb on + strand, within MPMX19_03231at 533.481 kb on - strand, within MPMX19_03231at 533.481 kb on - strand, within MPMX19_03231at 533.481 kb on - strand, within MPMX19_03231at 533.481 kb on - strand, within MPMX19_03231at 533.481 kb on - strand, within MPMX19_03231at 533.481 kb on - strand, within MPMX19_03231at 533.481 kb on - strand, within MPMX19_03231at 533.481 kb on - strand, within MPMX19_03231at 533.507 kb on + strand, within MPMX19_03231at 533.507 kb on + strand, within MPMX19_03231at 533.516 kb on + strand, within MPMX19_03231at 533.516 kb on + strand, within MPMX19_03231at 533.516 kb on + strand, within MPMX19_03231at 533.516 kb on + strand, within MPMX19_03231at 533.516 kb on + strand, within MPMX19_03231at 533.516 kb on + strand, within MPMX19_03231at 533.516 kb on + strand, within MPMX19_03231at 533.516 kb on + strand, within MPMX19_03231at 533.517 kb on - strand, within MPMX19_03231at 533.517 kb on - strand, within MPMX19_03231at 533.517 kb on - strand, within MPMX19_03231at 533.549 kb on + strand, within MPMX19_03231at 533.549 kb on + strand, within MPMX19_03231at 533.550 kb on - strand, within MPMX19_03231at 533.550 kb on - strand, within MPMX19_03231at 533.550 kb on - strand, within MPMX19_03231at 533.550 kb on - strand, within MPMX19_03231at 533.600 kb on + strand, within MPMX19_03231at 533.601 kb on - strand, within MPMX19_03231at 533.601 kb on - strand, within MPMX19_03231at 533.619 kb on - strand, within MPMX19_03231at 533.619 kb on - strand, within MPMX19_03231at 533.661 kb on - strand, within MPMX19_03231at 533.702 kb on + strand, within MPMX19_03231at 533.703 kb on - strand, within MPMX19_03231at 533.703 kb on - strand, within MPMX19_03231at 533.703 kb on - strand, within MPMX19_03231at 533.801 kb on + strand, within MPMX19_03231at 533.801 kb on + strand, within MPMX19_03231at 533.801 kb on + strand, within MPMX19_03231at 533.801 kb on + strand, within MPMX19_03231at 533.801 kb on + strand, within MPMX19_03231at 533.802 kb on - strand, within MPMX19_03231at 533.802 kb on - strand, within MPMX19_03231at 533.802 kb on - strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.918 kb on + strand, within MPMX19_03231at 533.919 kb on - strand, within MPMX19_03231at 533.919 kb on - strand, within MPMX19_03231at 533.919 kb on - strand, within MPMX19_03231at 533.919 kb on - strand, within MPMX19_03231at 533.919 kb on - strand, within MPMX19_03231at 533.919 kb on - strand, within MPMX19_03231at 533.919 kb on - strand, within MPMX19_03231at 533.919 kb on - strand, within MPMX19_03231at 533.972 kb on + strand, within MPMX19_03231at 533.972 kb on + strand, within MPMX19_03231at 533.972 kb on + strand, within MPMX19_03231at 533.972 kb on + strand, within MPMX19_03231at 533.972 kb on + strand, within MPMX19_03231at 533.973 kb on - strand, within MPMX19_03231at 533.973 kb on - strand, within MPMX19_03231at 533.973 kb on - strand, within MPMX19_03231at 533.973 kb on - strand, within MPMX19_03231at 534.020 kb on + strandat 534.021 kb on - strandat 534.125 kb on + strandat 534.125 kb on + strandat 534.125 kb on + strandat 534.125 kb on + strandat 534.125 kb on + strandat 534.126 kb on - strandat 534.126 kb on - strandat 534.126 kb on - strandat 534.126 kb on - strandat 534.126 kb on - strandat 534.128 kb on + strandat 534.128 kb on + strandat 534.128 kb on + strandat 534.128 kb on + strandat 534.129 kb on - strandat 534.129 kb on - strandat 534.129 kb on - strandat 534.129 kb on - strandat 534.143 kb on + strandat 534.143 kb on + strandat 534.143 kb on + strandat 534.144 kb on - strandat 534.144 kb on - strandat 534.162 kb on - strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.197 kb on + strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.198 kb on - strandat 534.207 kb on - strandat 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.597 kb on + strand, within MPMX19_03232at 534.598 kb on - strand, within MPMX19_03232at 534.598 kb on - strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.801 kb on + strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.802 kb on - strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.858 kb on + strand, within MPMX19_03232at 534.859 kb on - strand, within MPMX19_03232at 534.918 kb on + strand, within MPMX19_03232at 534.919 kb on - strand, within MPMX19_03232at 535.092 kb on + strandat 535.092 kb on + strandat 535.092 kb on + strandat 535.092 kb on + strandat 535.092 kb on + strandat 535.092 kb on + strandat 535.093 kb on - strandat 535.093 kb on - strandat 535.093 kb on - strandat 535.093 kb on - strandat 535.093 kb on - strandat 535.150 kb on - strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.339 kb on + strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.340 kb on - strandat 535.642 kb on + strand, within MPMX19_03233at 535.643 kb on - strand, within MPMX19_03233at 535.643 kb on - strand, within MPMX19_03233at 535.643 kb on - strand, within MPMX19_03233

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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533,262 - MPMX19_03231 0.58 +0.1
533,282 + MPMX19_03231 0.59 -0.4
533,333 + MPMX19_03231 0.61 -0.4
533,333 + MPMX19_03231 0.61 +2.1
533,334 - MPMX19_03231 0.61 -0.3
533,334 - MPMX19_03231 0.61 -0.9
533,334 - MPMX19_03231 0.61 -1.7
533,355 - MPMX19_03231 0.62 +0.1
533,480 + MPMX19_03231 0.68 -0.9
533,480 + MPMX19_03231 0.68 -0.8
533,480 + MPMX19_03231 0.68 +0.6
533,480 + MPMX19_03231 0.68 -1.1
533,481 - MPMX19_03231 0.68 +1.4
533,481 - MPMX19_03231 0.68 -0.9
533,481 - MPMX19_03231 0.68 -0.9
533,481 - MPMX19_03231 0.68 -0.7
533,481 - MPMX19_03231 0.68 +1.7
533,481 - MPMX19_03231 0.68 -0.4
533,481 - MPMX19_03231 0.68 -2.0
533,481 - MPMX19_03231 0.68 -0.4
533,507 + MPMX19_03231 0.69 -1.2
533,507 + MPMX19_03231 0.69 -1.9
533,516 + MPMX19_03231 0.69 -0.6
533,516 + MPMX19_03231 0.69 -0.2
533,516 + MPMX19_03231 0.69 -0.6
533,516 + MPMX19_03231 0.69 -0.1
533,516 + MPMX19_03231 0.69 +1.1
533,516 + MPMX19_03231 0.69 -0.7
533,516 + MPMX19_03231 0.69 -0.4
533,516 + MPMX19_03231 0.69 +0.1
533,517 - MPMX19_03231 0.69 -0.7
533,517 - MPMX19_03231 0.69 +0.9
533,517 - MPMX19_03231 0.69 -1.7
533,549 + MPMX19_03231 0.71 +0.1
533,549 + MPMX19_03231 0.71 -0.2
533,550 - MPMX19_03231 0.71 -1.3
533,550 - MPMX19_03231 0.71 -1.0
533,550 - MPMX19_03231 0.71 -0.3
533,550 - MPMX19_03231 0.71 +1.1
533,600 + MPMX19_03231 0.73 -1.2
533,601 - MPMX19_03231 0.73 +0.4
533,601 - MPMX19_03231 0.73 -0.3
533,619 - MPMX19_03231 0.74 -0.5
533,619 - MPMX19_03231 0.74 -0.8
533,661 - MPMX19_03231 0.76 -0.2
533,702 + MPMX19_03231 0.78 -0.4
533,703 - MPMX19_03231 0.78 -0.2
533,703 - MPMX19_03231 0.78 -0.8
533,703 - MPMX19_03231 0.78 +0.5
533,801 + MPMX19_03231 0.82 -1.2
533,801 + MPMX19_03231 0.82 +2.0
533,801 + MPMX19_03231 0.82 +0.9
533,801 + MPMX19_03231 0.82 -0.0
533,801 + MPMX19_03231 0.82 -0.9
533,802 - MPMX19_03231 0.82 -0.9
533,802 - MPMX19_03231 0.82 +0.1
533,802 - MPMX19_03231 0.82 +1.0
533,918 + MPMX19_03231 0.87 +1.3
533,918 + MPMX19_03231 0.87 +0.5
533,918 + MPMX19_03231 0.87 +0.5
533,918 + MPMX19_03231 0.87 +0.8
533,918 + MPMX19_03231 0.87 +0.7
533,918 + MPMX19_03231 0.87 +0.4
533,918 + MPMX19_03231 0.87 +0.1
533,918 + MPMX19_03231 0.87 +1.1
533,918 + MPMX19_03231 0.87 -2.0
533,918 + MPMX19_03231 0.87 -1.3
533,919 - MPMX19_03231 0.87 -0.4
533,919 - MPMX19_03231 0.87 -0.6
533,919 - MPMX19_03231 0.87 -0.4
533,919 - MPMX19_03231 0.87 -1.2
533,919 - MPMX19_03231 0.87 -0.4
533,919 - MPMX19_03231 0.87 -1.9
533,919 - MPMX19_03231 0.87 -0.4
533,919 - MPMX19_03231 0.87 -0.9
533,972 + MPMX19_03231 0.90 +2.1
533,972 + MPMX19_03231 0.90 +2.0
533,972 + MPMX19_03231 0.90 +0.4
533,972 + MPMX19_03231 0.90 +1.0
533,972 + MPMX19_03231 0.90 +1.1
533,973 - MPMX19_03231 0.90 +1.0
533,973 - MPMX19_03231 0.90 +0.1
533,973 - MPMX19_03231 0.90 +0.3
533,973 - MPMX19_03231 0.90 +0.0
534,020 + -0.4
534,021 - -0.3
534,125 + +0.4
534,125 + -0.9
534,125 + -1.7
534,125 + +0.1
534,125 + -0.9
534,126 - -0.6
534,126 - -0.7
534,126 - -1.0
534,126 - +0.7
534,126 - -0.9
534,128 + -0.6
534,128 + -0.4
534,128 + +0.6
534,128 + -1.7
534,129 - +0.7
534,129 - +1.4
534,129 - -0.9
534,129 - +0.3
534,143 + -1.9
534,143 + +0.1
534,143 + +0.3
534,144 - -1.2
534,144 - -1.4
534,162 - -0.7
534,197 + -0.7
534,197 + +0.1
534,197 + -0.7
534,197 + -1.3
534,197 + +0.3
534,197 + +0.1
534,197 + -0.4
534,198 - +2.4
534,198 - -0.3
534,198 - -1.2
534,198 - -0.4
534,198 - -3.4
534,198 - -0.3
534,198 - -0.1
534,198 - +0.6
534,198 - +0.1
534,207 - -0.9
534,597 + MPMX19_03232 0.40 -0.4
534,597 + MPMX19_03232 0.40 +0.7
534,597 + MPMX19_03232 0.40 -0.9
534,597 + MPMX19_03232 0.40 -0.4
534,597 + MPMX19_03232 0.40 -1.7
534,597 + MPMX19_03232 0.40 -0.8
534,597 + MPMX19_03232 0.40 -1.2
534,597 + MPMX19_03232 0.40 +0.8
534,598 - MPMX19_03232 0.40 -0.1
534,598 - MPMX19_03232 0.40 +0.2
534,801 + MPMX19_03232 0.62 +0.0
534,801 + MPMX19_03232 0.62 -1.4
534,801 + MPMX19_03232 0.62 +1.1
534,801 + MPMX19_03232 0.62 -0.8
534,801 + MPMX19_03232 0.62 -1.2
534,801 + MPMX19_03232 0.62 -0.8
534,801 + MPMX19_03232 0.62 +1.1
534,801 + MPMX19_03232 0.62 +1.4
534,801 + MPMX19_03232 0.62 -2.3
534,801 + MPMX19_03232 0.62 -0.2
534,801 + MPMX19_03232 0.62 -0.9
534,801 + MPMX19_03232 0.62 -0.4
534,801 + MPMX19_03232 0.62 +0.6
534,801 + MPMX19_03232 0.62 +0.7
534,801 + MPMX19_03232 0.62 -1.4
534,801 + MPMX19_03232 0.62 +0.0
534,801 + MPMX19_03232 0.62 -0.6
534,801 + MPMX19_03232 0.62 +0.8
534,801 + MPMX19_03232 0.62 +0.1
534,802 - MPMX19_03232 0.62 +1.7
534,802 - MPMX19_03232 0.62 +0.3
534,802 - MPMX19_03232 0.62 +0.1
534,802 - MPMX19_03232 0.62 -1.6
534,802 - MPMX19_03232 0.62 +0.3
534,802 - MPMX19_03232 0.62 +0.1
534,802 - MPMX19_03232 0.62 -0.2
534,802 - MPMX19_03232 0.62 -2.0
534,802 - MPMX19_03232 0.62 -1.9
534,802 - MPMX19_03232 0.62 -1.9
534,802 - MPMX19_03232 0.62 -0.3
534,802 - MPMX19_03232 0.62 -0.3
534,802 - MPMX19_03232 0.62 -1.2
534,802 - MPMX19_03232 0.62 -0.6
534,858 + MPMX19_03232 0.68 +0.1
534,858 + MPMX19_03232 0.68 -0.3
534,858 + MPMX19_03232 0.68 -0.3
534,858 + MPMX19_03232 0.68 -0.7
534,858 + MPMX19_03232 0.68 -0.1
534,859 - MPMX19_03232 0.68 -1.9
534,918 + MPMX19_03232 0.75 +1.1
534,919 - MPMX19_03232 0.75 -1.0
535,092 + +0.6
535,092 + -0.1
535,092 + -0.2
535,092 + -0.5
535,092 + -0.9
535,092 + +1.6
535,093 - +0.6
535,093 - +1.1
535,093 - -1.7
535,093 - -2.4
535,093 - -0.2
535,150 - -0.4
535,339 + +0.3
535,339 + -0.4
535,339 + -1.7
535,339 + -1.2
535,339 + -0.3
535,339 + +0.6
535,339 + -0.7
535,339 + +0.3
535,339 + +0.1
535,339 + -0.9
535,339 + +0.4
535,339 + +0.5
535,339 + -0.4
535,339 + +1.7
535,339 + -0.1
535,339 + -0.9
535,339 + -1.4
535,339 + +0.1
535,339 + -0.9
535,339 + -0.9
535,339 + -0.4
535,339 + -0.4
535,339 + +0.4
535,340 - +0.1
535,340 - +0.2
535,340 - -1.7
535,340 - -1.3
535,340 - +0.1
535,340 - -0.4
535,340 - +0.3
535,340 - -0.7
535,340 - -1.9
535,340 - +0.5
535,340 - +0.0
535,340 - +1.1
535,340 - +1.5
535,340 - +0.1
535,340 - -0.6
535,642 + MPMX19_03233 0.24 -0.2
535,643 - MPMX19_03233 0.24 -0.4
535,643 - MPMX19_03233 0.24 -0.8
535,643 - MPMX19_03233 0.24 -1.4

Or see this region's nucleotide sequence