Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03099

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03098 and MPMX19_03099 are separated by 162 nucleotidesMPMX19_03099 and MPMX19_03100 are separated by 445 nucleotides MPMX19_03098: MPMX19_03098 - hypothetical protein, at 368,029 to 369,165 _03098 MPMX19_03099: MPMX19_03099 - hypothetical protein, at 369,328 to 370,107 _03099 MPMX19_03100: MPMX19_03100 - hypothetical protein, at 370,553 to 371,212 _03100 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1at 368.354 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.664 kb on - strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.747 kb on + strand, within MPMX19_03098at 369.386 kb on + strandat 369.386 kb on + strandat 369.387 kb on - strandat 369.387 kb on - strandat 369.387 kb on - strandat 369.617 kb on + strand, within MPMX19_03099at 369.617 kb on + strand, within MPMX19_03099at 369.617 kb on + strand, within MPMX19_03099at 369.618 kb on - strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.695 kb on + strand, within MPMX19_03099at 369.696 kb on - strand, within MPMX19_03099at 369.696 kb on - strand, within MPMX19_03099at 369.696 kb on - strand, within MPMX19_03099at 369.854 kb on + strand, within MPMX19_03099at 369.854 kb on + strand, within MPMX19_03099at 369.854 kb on + strand, within MPMX19_03099at 369.855 kb on - strand, within MPMX19_03099at 369.855 kb on - strand, within MPMX19_03099at 369.873 kb on - strand, within MPMX19_03099at 369.873 kb on - strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 370.031 kb on + strandat 370.031 kb on + strandat 370.031 kb on + strandat 370.032 kb on - strandat 370.107 kb on + strandat 370.107 kb on + strandat 370.108 kb on - strandat 370.208 kb on - strandat 370.209 kb on + strandat 370.212 kb on - strandat 370.217 kb on + strandat 370.217 kb on + strandat 370.264 kb on + strandat 370.360 kb on - strandat 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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368,354 + MPMX19_03098 0.29 -2.4
368,537 + MPMX19_03098 0.45 +0.8
368,537 + MPMX19_03098 0.45 +0.7
368,537 + MPMX19_03098 0.45 -0.5
368,537 + MPMX19_03098 0.45 -0.2
368,537 + MPMX19_03098 0.45 -0.8
368,537 + MPMX19_03098 0.45 +0.7
368,537 + MPMX19_03098 0.45 -0.1
368,538 - MPMX19_03098 0.45 +0.5
368,538 - MPMX19_03098 0.45 -0.9
368,538 - MPMX19_03098 0.45 +1.1
368,538 - MPMX19_03098 0.45 -0.9
368,538 - MPMX19_03098 0.45 +0.4
368,538 - MPMX19_03098 0.45 -0.7
368,538 - MPMX19_03098 0.45 +1.1
368,538 - MPMX19_03098 0.45 -0.2
368,664 - MPMX19_03098 0.56 -0.7
368,687 + MPMX19_03098 0.58 -0.5
368,687 + MPMX19_03098 0.58 -0.2
368,687 + MPMX19_03098 0.58 -0.5
368,687 + MPMX19_03098 0.58 +0.3
368,687 + MPMX19_03098 0.58 +1.1
368,687 + MPMX19_03098 0.58 -0.9
368,688 - MPMX19_03098 0.58 -0.1
368,688 - MPMX19_03098 0.58 -0.7
368,688 - MPMX19_03098 0.58 -0.9
368,688 - MPMX19_03098 0.58 +0.5
368,688 - MPMX19_03098 0.58 -0.1
368,747 + MPMX19_03098 0.63 -1.5
369,386 + +0.4
369,386 + -0.5
369,387 - -0.4
369,387 - -0.6
369,387 - -0.1
369,617 + MPMX19_03099 0.37 -1.5
369,617 + MPMX19_03099 0.37 -0.9
369,617 + MPMX19_03099 0.37 +0.9
369,618 - MPMX19_03099 0.37 +0.1
369,626 + MPMX19_03099 0.38 +0.1
369,626 + MPMX19_03099 0.38 -0.2
369,626 + MPMX19_03099 0.38 -0.4
369,626 + MPMX19_03099 0.38 -0.9
369,626 + MPMX19_03099 0.38 +0.5
369,626 + MPMX19_03099 0.38 -0.2
369,626 + MPMX19_03099 0.38 +0.1
369,626 + MPMX19_03099 0.38 -0.4
369,626 + MPMX19_03099 0.38 -0.8
369,626 + MPMX19_03099 0.38 +0.7
369,626 + MPMX19_03099 0.38 -0.9
369,626 + MPMX19_03099 0.38 -0.2
369,626 + MPMX19_03099 0.38 -1.7
369,626 + MPMX19_03099 0.38 -0.2
369,626 + MPMX19_03099 0.38 -1.7
369,626 + MPMX19_03099 0.38 +0.1
369,627 - MPMX19_03099 0.38 -1.1
369,627 - MPMX19_03099 0.38 -0.9
369,627 - MPMX19_03099 0.38 +0.5
369,627 - MPMX19_03099 0.38 -0.9
369,627 - MPMX19_03099 0.38 -0.5
369,627 - MPMX19_03099 0.38 -0.9
369,627 - MPMX19_03099 0.38 -0.6
369,627 - MPMX19_03099 0.38 -0.3
369,627 - MPMX19_03099 0.38 -0.9
369,627 - MPMX19_03099 0.38 -1.0
369,627 - MPMX19_03099 0.38 -0.5
369,627 - MPMX19_03099 0.38 -1.4
369,627 - MPMX19_03099 0.38 +0.8
369,627 - MPMX19_03099 0.38 -1.2
369,627 - MPMX19_03099 0.38 +0.7
369,627 - MPMX19_03099 0.38 -1.9
369,695 + MPMX19_03099 0.47 -0.3
369,696 - MPMX19_03099 0.47 +1.7
369,696 - MPMX19_03099 0.47 -0.1
369,696 - MPMX19_03099 0.47 -1.2
369,854 + MPMX19_03099 0.67 +0.7
369,854 + MPMX19_03099 0.67 +0.1
369,854 + MPMX19_03099 0.67 -1.2
369,855 - MPMX19_03099 0.68 -2.2
369,855 - MPMX19_03099 0.68 -0.5
369,873 - MPMX19_03099 0.70 -0.4
369,873 - MPMX19_03099 0.70 -0.2
369,914 + MPMX19_03099 0.75 +0.1
369,914 + MPMX19_03099 0.75 +0.4
369,914 + MPMX19_03099 0.75 -1.1
369,914 + MPMX19_03099 0.75 +0.8
369,914 + MPMX19_03099 0.75 -0.6
369,915 - MPMX19_03099 0.75 -0.7
369,915 - MPMX19_03099 0.75 -0.2
369,915 - MPMX19_03099 0.75 -1.5
369,915 - MPMX19_03099 0.75 -0.1
369,915 - MPMX19_03099 0.75 -0.9
369,915 - MPMX19_03099 0.75 -0.9
369,915 - MPMX19_03099 0.75 +0.1
369,915 - MPMX19_03099 0.75 -2.0
370,031 + -0.5
370,031 + -0.7
370,031 + -0.9
370,032 - -2.2
370,107 + -1.9
370,107 + +0.2
370,108 - -0.5
370,208 - +0.1
370,209 + -0.5
370,212 - +0.6
370,217 + -1.5
370,217 + -1.1
370,264 + +0.8
370,360 - -2.0
371,087 + MPMX19_03100 0.81 -0.8
371,087 + MPMX19_03100 0.81 +0.2
371,087 + MPMX19_03100 0.81 -0.5
371,087 + MPMX19_03100 0.81 +0.4
371,087 + MPMX19_03100 0.81 +0.3
371,087 + MPMX19_03100 0.81 -1.5
371,087 + MPMX19_03100 0.81 +0.2
371,087 + MPMX19_03100 0.81 +1.1
371,088 - MPMX19_03100 0.81 -0.3
371,088 - MPMX19_03100 0.81 -1.0
371,088 - MPMX19_03100 0.81 +0.5
371,088 - MPMX19_03100 0.81 -0.8
371,088 - MPMX19_03100 0.81 -0.9
371,088 - MPMX19_03100 0.81 +0.1
371,088 - MPMX19_03100 0.81 +0.8
371,088 - MPMX19_03100 0.81 -1.2

Or see this region's nucleotide sequence