Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03070 and MPMX19_03071 are separated by 114 nucleotides MPMX19_03071 and MPMX19_03072 are separated by 61 nucleotides MPMX19_03072 and MPMX19_03073 are separated by 39 nucleotides
MPMX19_03070: MPMX19_03070 - Inner membrane protein YdcO, at 334,864 to 336,096
_03070
MPMX19_03071: MPMX19_03071 - HTH-type transcriptional regulatory protein GabR, at 336,211 to 337,701
_03071
MPMX19_03072: MPMX19_03072 - hypothetical protein, at 337,763 to 337,870
_03072
MPMX19_03073: MPMX19_03073 - hypothetical protein, at 337,910 to 338,584
_03073
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.393 kb on + strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.394 kb on - strand, within MPMX19_03070 at 335.571 kb on - strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.600 kb on + strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.601 kb on - strand, within MPMX19_03070 at 335.738 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.783 kb on + strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.784 kb on - strand, within MPMX19_03070 at 335.804 kb on + strand, within MPMX19_03070 at 335.804 kb on + strand, within MPMX19_03070 at 335.805 kb on - strand, within MPMX19_03070 at 335.805 kb on - strand, within MPMX19_03070 at 335.805 kb on - strand, within MPMX19_03070 at 335.805 kb on - strand, within MPMX19_03070 at 335.918 kb on - strand, within MPMX19_03070 at 335.959 kb on + strand, within MPMX19_03070 at 335.959 kb on + strand, within MPMX19_03070 at 336.008 kb on + strand at 336.008 kb on + strand at 336.008 kb on + strand at 336.008 kb on + strand at 336.008 kb on + strand at 336.009 kb on + strand at 336.009 kb on - strand at 336.009 kb on - strand at 336.009 kb on - strand at 336.009 kb on - strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.088 kb on + strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.089 kb on - strand at 336.156 kb on + strand at 336.156 kb on + strand at 336.157 kb on - strand at 336.157 kb on - strand at 336.412 kb on + strand, within MPMX19_03071 at 336.639 kb on + strand, within MPMX19_03071 at 336.760 kb on + strand, within MPMX19_03071 at 336.761 kb on - strand, within MPMX19_03071 at 336.761 kb on - strand, within MPMX19_03071 at 336.761 kb on - strand, within MPMX19_03071 at 336.761 kb on - strand, within MPMX19_03071 at 336.895 kb on + strand, within MPMX19_03071 at 336.896 kb on - strand, within MPMX19_03071 at 336.896 kb on - strand, within MPMX19_03071 at 336.896 kb on - strand, within MPMX19_03071 at 336.896 kb on - strand, within MPMX19_03071 at 336.898 kb on + strand, within MPMX19_03071 at 336.898 kb on + strand, within MPMX19_03071 at 336.898 kb on + strand, within MPMX19_03071 at 336.899 kb on - strand, within MPMX19_03071 at 336.899 kb on - strand, within MPMX19_03071 at 336.899 kb on - strand, within MPMX19_03071 at 336.899 kb on - strand, within MPMX19_03071 at 336.983 kb on + strand, within MPMX19_03071 at 336.983 kb on + strand, within MPMX19_03071 at 337.126 kb on + strand, within MPMX19_03071 at 337.126 kb on + strand, within MPMX19_03071 at 337.126 kb on + strand, within MPMX19_03071 at 337.127 kb on - strand, within MPMX19_03071 at 337.127 kb on - strand, within MPMX19_03071 at 337.127 kb on - strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.201 kb on + strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.202 kb on - strand, within MPMX19_03071 at 337.249 kb on + strand, within MPMX19_03071 at 337.249 kb on + strand, within MPMX19_03071 at 337.249 kb on + strand, within MPMX19_03071 at 337.249 kb on + strand, within MPMX19_03071 at 337.250 kb on - strand, within MPMX19_03071 at 337.250 kb on - strand, within MPMX19_03071 at 337.250 kb on - strand, within MPMX19_03071 at 337.274 kb on + strand, within MPMX19_03071 at 337.275 kb on - strand, within MPMX19_03071 at 337.375 kb on + strand, within MPMX19_03071 at 337.375 kb on + strand, within MPMX19_03071 at 337.375 kb on + strand, within MPMX19_03071 at 337.375 kb on + strand, within MPMX19_03071 at 337.376 kb on + strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.376 kb on - strand, within MPMX19_03071 at 337.399 kb on + strand, within MPMX19_03071 at 337.399 kb on + strand, within MPMX19_03071 at 337.399 kb on + strand, within MPMX19_03071 at 337.399 kb on + strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.400 kb on - strand, within MPMX19_03071 at 337.525 kb on - strand, within MPMX19_03071 at 337.525 kb on - strand, within MPMX19_03071 at 337.582 kb on + strand at 337.582 kb on + strand at 337.583 kb on - strand at 337.630 kb on + strand at 337.630 kb on + strand at 337.630 kb on + strand at 337.631 kb on - strand at 337.631 kb on - strand at 337.700 kb on - strand at 337.714 kb on + strand at 337.715 kb on - strand at 337.715 kb on - strand at 337.715 kb on - strand at 337.771 kb on + strand at 337.772 kb on - strand at 337.772 kb on - strand at 337.772 kb on - strand at 337.777 kb on + strand, within MPMX19_03072 at 337.777 kb on + strand, within MPMX19_03072 at 337.778 kb on - strand, within MPMX19_03072 at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.869 kb on - strand at 337.869 kb on - strand at 337.869 kb on - strand at 337.879 kb on + strand at 337.879 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.929 kb on - strand at 337.929 kb on - strand at 337.972 kb on + strand at 338.027 kb on + strand, within MPMX19_03073 at 338.027 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 335,393 + MPMX19_03070 0.43 -1.5 335,393 + MPMX19_03070 0.43 -2.7 335,393 + MPMX19_03070 0.43 -1.5 335,393 + MPMX19_03070 0.43 -0.2 335,393 + MPMX19_03070 0.43 -1.5 335,393 + MPMX19_03070 0.43 -0.9 335,393 + MPMX19_03070 0.43 -1.5 335,393 + MPMX19_03070 0.43 -0.7 335,394 - MPMX19_03070 0.43 -0.3 335,394 - MPMX19_03070 0.43 -0.2 335,394 - MPMX19_03070 0.43 -1.8 335,394 - MPMX19_03070 0.43 -0.8 335,394 - MPMX19_03070 0.43 +1.4 335,571 - MPMX19_03070 0.57 -0.2 335,600 + MPMX19_03070 0.60 +0.5 335,600 + MPMX19_03070 0.60 -1.8 335,600 + MPMX19_03070 0.60 +0.5 335,600 + MPMX19_03070 0.60 -0.1 335,600 + MPMX19_03070 0.60 +0.7 335,600 + MPMX19_03070 0.60 +0.3 335,601 - MPMX19_03070 0.60 -2.2 335,601 - MPMX19_03070 0.60 -0.9 335,601 - MPMX19_03070 0.60 -0.9 335,601 - MPMX19_03070 0.60 +0.4 335,601 - MPMX19_03070 0.60 -0.5 335,601 - MPMX19_03070 0.60 -0.2 335,738 + MPMX19_03070 0.71 +1.7 335,783 + MPMX19_03070 0.75 +0.8 335,783 + MPMX19_03070 0.75 -0.9 335,783 + MPMX19_03070 0.75 -0.5 335,783 + MPMX19_03070 0.75 -0.7 335,783 + MPMX19_03070 0.75 +0.3 335,783 + MPMX19_03070 0.75 -1.5 335,783 + MPMX19_03070 0.75 -0.2 335,784 - MPMX19_03070 0.75 -1.7 335,784 - MPMX19_03070 0.75 -0.0 335,784 - MPMX19_03070 0.75 -1.1 335,784 - MPMX19_03070 0.75 +0.4 335,784 - MPMX19_03070 0.75 -1.2 335,784 - MPMX19_03070 0.75 -0.5 335,784 - MPMX19_03070 0.75 +0.1 335,784 - MPMX19_03070 0.75 +0.1 335,804 + MPMX19_03070 0.76 +0.1 335,804 + MPMX19_03070 0.76 -0.9 335,805 - MPMX19_03070 0.76 -1.3 335,805 - MPMX19_03070 0.76 -2.1 335,805 - MPMX19_03070 0.76 +0.1 335,805 - MPMX19_03070 0.76 -0.9 335,918 - MPMX19_03070 0.85 -1.9 335,959 + MPMX19_03070 0.89 -0.5 335,959 + MPMX19_03070 0.89 +0.1 336,008 + -0.6 336,008 + +0.1 336,008 + -0.5 336,008 + -0.4 336,008 + +0.5 336,009 + -0.6 336,009 - -0.7 336,009 - +0.1 336,009 - +1.1 336,009 - -0.6 336,088 + -1.1 336,088 + -0.9 336,088 + -0.7 336,088 + -0.2 336,088 + -1.9 336,088 + -0.1 336,088 + -2.2 336,088 + -1.2 336,088 + +2.7 336,088 + -0.2 336,088 + -0.9 336,088 + -0.1 336,088 + -1.4 336,088 + +0.3 336,088 + -0.8 336,088 + -0.5 336,088 + +0.1 336,088 + +1.1 336,088 + +0.1 336,088 + -0.5 336,088 + -2.5 336,089 - -1.4 336,089 - +1.1 336,089 - +1.4 336,089 - -1.2 336,089 - -0.2 336,089 - -0.2 336,089 - -0.3 336,089 - +0.5 336,089 - -0.5 336,089 - -1.7 336,089 - -0.0 336,089 - +1.1 336,089 - -1.2 336,089 - -0.9 336,089 - +0.8 336,089 - -0.6 336,089 - -1.6 336,089 - -0.1 336,089 - +0.7 336,156 + +0.4 336,156 + +1.1 336,157 - +0.1 336,157 - -0.9 336,412 + MPMX19_03071 0.13 +0.1 336,639 + MPMX19_03071 0.29 -0.8 336,760 + MPMX19_03071 0.37 -1.1 336,761 - MPMX19_03071 0.37 -2.2 336,761 - MPMX19_03071 0.37 +1.1 336,761 - MPMX19_03071 0.37 -0.7 336,761 - MPMX19_03071 0.37 +0.1 336,895 + MPMX19_03071 0.46 -0.2 336,896 - MPMX19_03071 0.46 -1.7 336,896 - MPMX19_03071 0.46 -0.9 336,896 - MPMX19_03071 0.46 -0.9 336,896 - MPMX19_03071 0.46 +0.3 336,898 + MPMX19_03071 0.46 +0.3 336,898 + MPMX19_03071 0.46 -1.2 336,898 + MPMX19_03071 0.46 +0.3 336,899 - MPMX19_03071 0.46 -1.2 336,899 - MPMX19_03071 0.46 -1.2 336,899 - MPMX19_03071 0.46 -0.2 336,899 - MPMX19_03071 0.46 -0.8 336,983 + MPMX19_03071 0.52 +0.3 336,983 + MPMX19_03071 0.52 +1.5 337,126 + MPMX19_03071 0.61 -0.9 337,126 + MPMX19_03071 0.61 +1.7 337,126 + MPMX19_03071 0.61 -0.1 337,127 - MPMX19_03071 0.61 +0.1 337,127 - MPMX19_03071 0.61 -1.4 337,127 - MPMX19_03071 0.61 -0.2 337,201 + MPMX19_03071 0.66 +0.6 337,201 + MPMX19_03071 0.66 +1.1 337,201 + MPMX19_03071 0.66 -1.9 337,201 + MPMX19_03071 0.66 -2.1 337,201 + MPMX19_03071 0.66 +0.3 337,201 + MPMX19_03071 0.66 -0.6 337,202 - MPMX19_03071 0.66 -1.4 337,202 - MPMX19_03071 0.66 -0.2 337,202 - MPMX19_03071 0.66 +0.1 337,202 - MPMX19_03071 0.66 +0.3 337,202 - MPMX19_03071 0.66 -1.5 337,202 - MPMX19_03071 0.66 +0.3 337,202 - MPMX19_03071 0.66 -0.7 337,249 + MPMX19_03071 0.70 -1.2 337,249 + MPMX19_03071 0.70 -1.4 337,249 + MPMX19_03071 0.70 -0.7 337,249 + MPMX19_03071 0.70 +1.1 337,250 - MPMX19_03071 0.70 -0.9 337,250 - MPMX19_03071 0.70 -1.1 337,250 - MPMX19_03071 0.70 -0.2 337,274 + MPMX19_03071 0.71 -0.2 337,275 - MPMX19_03071 0.71 -1.2 337,375 + MPMX19_03071 0.78 -1.7 337,375 + MPMX19_03071 0.78 +0.5 337,375 + MPMX19_03071 0.78 -0.5 337,375 + MPMX19_03071 0.78 -2.4 337,376 + MPMX19_03071 0.78 -1.7 337,376 - MPMX19_03071 0.78 +0.2 337,376 - MPMX19_03071 0.78 -1.2 337,376 - MPMX19_03071 0.78 +0.2 337,376 - MPMX19_03071 0.78 +1.1 337,376 - MPMX19_03071 0.78 -1.7 337,376 - MPMX19_03071 0.78 +0.5 337,376 - MPMX19_03071 0.78 -1.1 337,376 - MPMX19_03071 0.78 -1.2 337,376 - MPMX19_03071 0.78 -2.0 337,399 + MPMX19_03071 0.80 +0.1 337,399 + MPMX19_03071 0.80 -0.2 337,399 + MPMX19_03071 0.80 -1.2 337,399 + MPMX19_03071 0.80 -0.4 337,400 - MPMX19_03071 0.80 +0.8 337,400 - MPMX19_03071 0.80 -1.2 337,400 - MPMX19_03071 0.80 -1.1 337,400 - MPMX19_03071 0.80 +1.1 337,400 - MPMX19_03071 0.80 -1.7 337,400 - MPMX19_03071 0.80 -1.1 337,400 - MPMX19_03071 0.80 +0.4 337,400 - MPMX19_03071 0.80 -1.2 337,400 - MPMX19_03071 0.80 -0.5 337,400 - MPMX19_03071 0.80 -0.3 337,525 - MPMX19_03071 0.88 -1.1 337,525 - MPMX19_03071 0.88 -0.5 337,582 + -1.9 337,582 + -0.7 337,583 - -1.4 337,630 + -1.5 337,630 + +0.2 337,630 + -0.1 337,631 - -0.3 337,631 - -0.5 337,700 - -0.6 337,714 + +0.8 337,715 - -0.3 337,715 - -0.7 337,715 - +0.8 337,771 + -0.3 337,772 - -1.7 337,772 - -0.2 337,772 - -0.1 337,777 + MPMX19_03072 0.13 +0.1 337,777 + MPMX19_03072 0.13 -0.0 337,778 - MPMX19_03072 0.14 -0.3 337,868 + -0.3 337,868 + +1.1 337,868 + +0.1 337,868 + -0.6 337,868 + +1.1 337,869 - -1.5 337,869 - -0.1 337,869 - -1.7 337,879 + +1.6 337,879 + -0.5 337,928 + -0.2 337,928 + -0.9 337,928 + +0.5 337,928 + -0.9 337,928 + +0.7 337,929 - -1.2 337,929 - +0.4 337,972 + +0.1 338,027 + MPMX19_03073 0.17 -1.2 338,027 + MPMX19_03073 0.17 -1.9 338,465 + MPMX19_03073 0.82 +0.1 338,465 + MPMX19_03073 0.82 +0.1 338,465 + MPMX19_03073 0.82 +0.3 338,466 - MPMX19_03073 0.82 -0.1 338,466 - MPMX19_03073 0.82 -1.2 338,466 - MPMX19_03073 0.82 -0.2
Or see this region's nucleotide sequence