Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01931

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01928 and MPMX19_01929 are separated by 253 nucleotidesMPMX19_01929 and MPMX19_01930 are separated by 208 nucleotidesMPMX19_01930 and MPMX19_01931 are separated by 56 nucleotidesMPMX19_01931 and MPMX19_01932 are separated by 162 nucleotides MPMX19_01928: MPMX19_01928 - hypothetical protein, at 2,011,374 to 2,012,036 _01928 MPMX19_01929: MPMX19_01929 - tRNA-Ser, at 2,012,290 to 2,012,379 _01929 MPMX19_01930: MPMX19_01930 - 50S ribosomal protein L21, at 2,012,588 to 2,012,905 _01930 MPMX19_01931: MPMX19_01931 - 50S ribosomal protein L27, at 2,012,962 to 2,013,249 _01931 MPMX19_01932: MPMX19_01932 - GTPase Obg, at 2,013,412 to 2,014,719 _01932 Position (kb) 2012 2013 2014Strain fitness (log2 ratio) -3 -2 -1 0 1at 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.993 kb on + strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2011.994 kb on - strandat 2012.271 kb on - strandat 2012.271 kb on - strandat 2012.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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2,011,993 + -0.4
2,011,993 + -1.1
2,011,993 + -1.8
2,011,993 + -1.4
2,011,993 + -0.9
2,011,993 + -0.4
2,011,993 + +0.2
2,011,993 + -2.0
2,011,993 + -0.6
2,011,993 + +0.7
2,011,993 + -2.0
2,011,993 + +0.0
2,011,993 + -0.3
2,011,993 + +1.0
2,011,993 + +0.2
2,011,993 + -0.6
2,011,993 + +0.0
2,011,993 + -0.6
2,011,993 + +0.0
2,011,993 + +1.0
2,011,993 + -1.1
2,011,993 + +1.3
2,011,993 + -0.2
2,011,994 - +0.4
2,011,994 - +0.0
2,011,994 - -1.6
2,011,994 - +0.0
2,011,994 - -1.3
2,011,994 - -0.6
2,011,994 - -1.3
2,011,994 - +1.0
2,011,994 - -0.6
2,011,994 - -0.3
2,011,994 - -1.0
2,011,994 - -0.3
2,011,994 - +1.0
2,011,994 - -1.1
2,011,994 - +0.7
2,011,994 - +1.4
2,011,994 - +0.0
2,011,994 - -0.4
2,011,994 - -1.0
2,011,994 - +1.0
2,011,994 - -1.3
2,011,994 - +1.0
2,011,994 - -1.3
2,011,994 - -1.0
2,012,271 - -1.0
2,012,271 - -2.9
2,012,271 - +0.0

Or see this region's nucleotide sequence