Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01769

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01768 and MPMX19_01769 are separated by 93 nucleotidesMPMX19_01769 and MPMX19_01770 are separated by 71 nucleotidesMPMX19_01770 and MPMX19_01771 are separated by 16 nucleotides MPMX19_01768: MPMX19_01768 - Cell shape-determining protein MreB, at 1,854,794 to 1,855,834 _01768 MPMX19_01769: MPMX19_01769 - Cell shape-determining protein MreC, at 1,855,928 to 1,856,797 _01769 MPMX19_01770: MPMX19_01770 - hypothetical protein, at 1,856,869 to 1,857,381 _01770 MPMX19_01771: MPMX19_01771 - Peptidoglycan D,D-transpeptidase MrdA, at 1,857,398 to 1,859,284 _01771 Position (kb) 1855 1856 1857Strain fitness (log2 ratio) -1 0 1at 1855.829 kb on + strandat 1855.829 kb on + strandat 1855.829 kb on + strandat 1855.841 kb on + strandat 1855.841 kb on + strandat 1855.887 kb on + strandat 1855.908 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,855,829 + -0.4
1,855,829 + +0.3
1,855,829 + -1.1
1,855,841 + +1.1
1,855,841 + -0.2
1,855,887 + +1.4
1,855,908 + -0.1

Or see this region's nucleotide sequence