Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01724

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01723 and MPMX19_01724 are separated by 163 nucleotidesMPMX19_01724 and MPMX19_01725 are separated by 155 nucleotidesMPMX19_01725 and MPMX19_01726 are separated by 17 nucleotides MPMX19_01723: MPMX19_01723 - Lipoprotein-releasing system transmembrane protein LolC, at 1,814,509 to 1,815,756 _01723 MPMX19_01724: MPMX19_01724 - Proline--tRNA ligase, at 1,815,920 to 1,817,233 _01724 MPMX19_01725: MPMX19_01725 - hypothetical protein, at 1,817,389 to 1,817,865 _01725 MPMX19_01726: MPMX19_01726 - hypothetical protein, at 1,817,883 to 1,818,782 _01726 Position (kb) 1815 1816 1817 1818Strain fitness (log2 ratio) -2 -1 0 1 2at 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.808 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.812 kb on - strandat 1815.913 kb on - strandat 1815.913 kb on - strandat 1817.326 kb on - strandat 1817.326 kb on - strandat 1817.326 kb on - strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.353 kb on + strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.354 kb on - strandat 1817.390 kb on + strandat 1817.405 kb on + strandat 1817.405 kb on + strandat 1817.405 kb on + strandat 1817.405 kb on + strandat 1817.405 kb on + strandat 1817.405 kb on + strandat 1817.405 kb on + strandat 1817.405 kb on + strandat 1817.405 kb on + strandat 1817.405 kb on + strandat 1817.406 kb on - strandat 1817.406 kb on - strandat 1817.406 kb on - strandat 1817.406 kb on - strandat 1817.406 kb on - strandat 1817.406 kb on - strandat 1817.406 kb on - strandat 1817.406 kb on - strandat 1817.411 kb on + strandat 1817.411 kb on + strandat 1817.411 kb on + strandat 1817.411 kb on + strandat 1817.411 kb on + strandat 1817.411 kb on + strandat 1817.411 kb on + strandat 1817.411 kb on + strandat 1817.411 kb on + strandat 1817.412 kb on - strandat 1817.412 kb on - strandat 1817.412 kb on - strandat 1817.412 kb on - strandat 1817.412 kb on - strandat 1817.412 kb on - strandat 1817.412 kb on - strandat 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.456 kb on + strand, within MPMX19_01725at 1817.457 kb on - strand, within MPMX19_01725at 1817.457 kb on - strand, within MPMX19_01725at 1817.457 kb on - strand, within MPMX19_01725at 1817.457 kb on - strand, within MPMX19_01725at 1817.457 kb on - strand, within MPMX19_01725at 1817.457 kb on - strand, within MPMX19_01725at 1817.510 kb on + strand, within MPMX19_01725at 1817.510 kb on + strand, within MPMX19_01725at 1817.510 kb on + strand, within MPMX19_01725at 1817.510 kb on + strand, within MPMX19_01725at 1817.510 kb on + strand, within MPMX19_01725at 1817.510 kb on + strand, within MPMX19_01725at 1817.511 kb on - strand, within MPMX19_01725at 1817.511 kb on - strand, within MPMX19_01725at 1817.511 kb on - strand, within MPMX19_01725at 1817.511 kb on - strand, within MPMX19_01725at 1817.511 kb on - strand, within MPMX19_01725at 1817.511 kb on - strand, within MPMX19_01725at 1817.511 kb on - strand, within MPMX19_01725at 1817.935 kb on + strandat 1817.935 kb on + strandat 1817.935 kb on + strandat 1817.935 kb on + strandat 1817.936 kb on - strandat 1817.936 kb on - strandat 1817.936 kb on - strandat 1817.947 kb on + strandat 1817.947 kb on + strandat 1817.947 kb on + strandat 1817.947 kb on + strandat 1817.947 kb on + strandat 1817.947 kb on + strandat 1817.948 kb on - strandat 1817.948 kb on - strandat 1817.948 kb on - strandat 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.998 kb on + strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1817.999 kb on - strand, within MPMX19_01726at 1818.085 kb on + strand, within MPMX19_01726at 1818.085 kb on + strand, within MPMX19_01726at 1818.085 kb on + strand, within MPMX19_01726at 1818.085 kb on + strand, within MPMX19_01726at 1818.085 kb on + strand, within MPMX19_01726at 1818.085 kb on + strand, within MPMX19_01726at 1818.085 kb on + strand, within MPMX19_01726at 1818.085 kb on + strand, within MPMX19_01726at 1818.085 kb on + strand, within MPMX19_01726at 1818.086 kb on - strand, within MPMX19_01726at 1818.086 kb on - strand, within MPMX19_01726at 1818.086 kb on - strand, within MPMX19_01726at 1818.086 kb on - strand, within MPMX19_01726at 1818.149 kb on - strand, within MPMX19_01726at 1818.149 kb on - strand, within MPMX19_01726at 1818.167 kb on - strand, within MPMX19_01726at 1818.167 kb on - strand, within MPMX19_01726at 1818.167 kb on - strand, within MPMX19_01726

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,815,808 - -0.9
1,815,808 - -0.2
1,815,808 - -0.5
1,815,808 - -0.9
1,815,808 - -1.2
1,815,808 - -1.4
1,815,808 - -1.4
1,815,808 - -0.8
1,815,808 - -1.5
1,815,808 - +1.0
1,815,808 - +0.1
1,815,808 - -1.0
1,815,808 - +1.5
1,815,808 - -0.7
1,815,808 - -0.0
1,815,808 - -0.5
1,815,812 - +0.6
1,815,812 - -0.4
1,815,812 - +0.0
1,815,812 - -0.2
1,815,812 - -0.7
1,815,812 - -1.2
1,815,812 - -1.1
1,815,812 - +1.1
1,815,812 - -1.5
1,815,812 - +0.1
1,815,812 - +1.3
1,815,812 - +2.7
1,815,812 - -0.2
1,815,812 - -0.5
1,815,812 - -0.5
1,815,812 - +0.4
1,815,812 - -2.2
1,815,812 - -1.1
1,815,812 - -0.3
1,815,812 - -0.2
1,815,812 - +0.6
1,815,812 - -2.1
1,815,812 - +0.1
1,815,812 - -0.3
1,815,812 - +0.4
1,815,812 - +2.1
1,815,812 - -1.9
1,815,812 - -0.5
1,815,812 - +0.5
1,815,913 - +0.3
1,815,913 - +1.7
1,817,326 - -0.5
1,817,326 - -0.9
1,817,326 - -1.5
1,817,353 + +0.1
1,817,353 + -1.5
1,817,353 + -0.7
1,817,353 + +0.1
1,817,353 + -0.3
1,817,353 + -1.0
1,817,353 + +1.0
1,817,353 + -0.7
1,817,353 + +0.3
1,817,353 + -0.3
1,817,353 + +1.4
1,817,353 + +0.8
1,817,353 + +0.7
1,817,353 + +0.3
1,817,353 + -0.9
1,817,353 + +0.9
1,817,353 + +0.8
1,817,353 + +0.7
1,817,353 + -0.9
1,817,353 + +0.5
1,817,353 + -0.5
1,817,353 + -0.2
1,817,353 + +1.3
1,817,353 + +0.1
1,817,353 + -0.1
1,817,353 + +0.1
1,817,353 + -0.8
1,817,354 - +0.6
1,817,354 - -0.9
1,817,354 - -1.2
1,817,354 - -0.3
1,817,354 - +0.8
1,817,354 - -0.0
1,817,354 - -0.4
1,817,354 - +0.1
1,817,354 - +0.7
1,817,354 - -0.5
1,817,354 - -0.8
1,817,354 - -0.3
1,817,354 - +0.1
1,817,390 + -0.2
1,817,405 + -0.5
1,817,405 + -1.5
1,817,405 + +0.8
1,817,405 + -0.9
1,817,405 + -0.7
1,817,405 + +0.6
1,817,405 + +1.4
1,817,405 + -1.5
1,817,405 + -0.9
1,817,405 + +0.1
1,817,406 - -1.6
1,817,406 - +0.2
1,817,406 - +0.5
1,817,406 - +2.1
1,817,406 - -0.9
1,817,406 - -0.2
1,817,406 - -1.5
1,817,406 - +0.3
1,817,411 + +0.5
1,817,411 + -1.2
1,817,411 + +0.1
1,817,411 + +0.3
1,817,411 + -0.4
1,817,411 + +0.1
1,817,411 + -0.6
1,817,411 + -0.9
1,817,411 + +0.2
1,817,412 - -0.3
1,817,412 - +0.7
1,817,412 - -0.2
1,817,412 - -0.6
1,817,412 - +0.5
1,817,412 - +0.6
1,817,412 - +1.1
1,817,456 + MPMX19_01725 0.14 -0.2
1,817,456 + MPMX19_01725 0.14 +1.7
1,817,456 + MPMX19_01725 0.14 -1.9
1,817,456 + MPMX19_01725 0.14 -1.7
1,817,456 + MPMX19_01725 0.14 -0.2
1,817,456 + MPMX19_01725 0.14 -0.3
1,817,456 + MPMX19_01725 0.14 +0.4
1,817,456 + MPMX19_01725 0.14 +0.3
1,817,456 + MPMX19_01725 0.14 +0.1
1,817,456 + MPMX19_01725 0.14 -1.5
1,817,456 + MPMX19_01725 0.14 -0.5
1,817,457 - MPMX19_01725 0.14 -0.5
1,817,457 - MPMX19_01725 0.14 -0.1
1,817,457 - MPMX19_01725 0.14 -1.2
1,817,457 - MPMX19_01725 0.14 +2.1
1,817,457 - MPMX19_01725 0.14 -0.2
1,817,457 - MPMX19_01725 0.14 +1.1
1,817,510 + MPMX19_01725 0.25 +1.8
1,817,510 + MPMX19_01725 0.25 +0.8
1,817,510 + MPMX19_01725 0.25 -0.4
1,817,510 + MPMX19_01725 0.25 +1.1
1,817,510 + MPMX19_01725 0.25 -0.9
1,817,510 + MPMX19_01725 0.25 +1.1
1,817,511 - MPMX19_01725 0.26 +2.1
1,817,511 - MPMX19_01725 0.26 +0.8
1,817,511 - MPMX19_01725 0.26 -0.1
1,817,511 - MPMX19_01725 0.26 +0.7
1,817,511 - MPMX19_01725 0.26 -0.7
1,817,511 - MPMX19_01725 0.26 +1.1
1,817,511 - MPMX19_01725 0.26 +0.1
1,817,935 + -1.0
1,817,935 + -1.5
1,817,935 + -0.3
1,817,935 + +0.1
1,817,936 - -0.2
1,817,936 - -2.6
1,817,936 - +0.2
1,817,947 + -0.1
1,817,947 + -1.9
1,817,947 + -0.2
1,817,947 + +0.8
1,817,947 + +0.5
1,817,947 + -0.4
1,817,948 - +0.8
1,817,948 - -1.2
1,817,948 - -0.5
1,817,998 + MPMX19_01726 0.13 -1.1
1,817,998 + MPMX19_01726 0.13 -1.5
1,817,998 + MPMX19_01726 0.13 -0.8
1,817,998 + MPMX19_01726 0.13 +0.8
1,817,998 + MPMX19_01726 0.13 -1.1
1,817,998 + MPMX19_01726 0.13 +0.8
1,817,998 + MPMX19_01726 0.13 -1.7
1,817,998 + MPMX19_01726 0.13 +0.1
1,817,998 + MPMX19_01726 0.13 -1.2
1,817,998 + MPMX19_01726 0.13 +0.0
1,817,998 + MPMX19_01726 0.13 -0.2
1,817,998 + MPMX19_01726 0.13 -0.5
1,817,998 + MPMX19_01726 0.13 -0.9
1,817,998 + MPMX19_01726 0.13 +1.7
1,817,998 + MPMX19_01726 0.13 +0.4
1,817,999 - MPMX19_01726 0.13 -1.2
1,817,999 - MPMX19_01726 0.13 -0.9
1,817,999 - MPMX19_01726 0.13 -0.5
1,817,999 - MPMX19_01726 0.13 -0.4
1,817,999 - MPMX19_01726 0.13 -2.5
1,817,999 - MPMX19_01726 0.13 -0.5
1,817,999 - MPMX19_01726 0.13 -0.5
1,817,999 - MPMX19_01726 0.13 -2.1
1,817,999 - MPMX19_01726 0.13 -0.5
1,817,999 - MPMX19_01726 0.13 -0.2
1,817,999 - MPMX19_01726 0.13 -0.7
1,817,999 - MPMX19_01726 0.13 -0.7
1,817,999 - MPMX19_01726 0.13 +0.4
1,817,999 - MPMX19_01726 0.13 +0.1
1,817,999 - MPMX19_01726 0.13 -0.9
1,817,999 - MPMX19_01726 0.13 -1.5
1,817,999 - MPMX19_01726 0.13 -0.7
1,817,999 - MPMX19_01726 0.13 +2.4
1,817,999 - MPMX19_01726 0.13 -0.5
1,817,999 - MPMX19_01726 0.13 -0.5
1,817,999 - MPMX19_01726 0.13 +0.1
1,817,999 - MPMX19_01726 0.13 -1.0
1,817,999 - MPMX19_01726 0.13 +0.4
1,817,999 - MPMX19_01726 0.13 -0.1
1,817,999 - MPMX19_01726 0.13 -0.3
1,817,999 - MPMX19_01726 0.13 -1.7
1,818,085 + MPMX19_01726 0.22 -0.5
1,818,085 + MPMX19_01726 0.22 -2.1
1,818,085 + MPMX19_01726 0.22 -0.7
1,818,085 + MPMX19_01726 0.22 +0.5
1,818,085 + MPMX19_01726 0.22 -1.5
1,818,085 + MPMX19_01726 0.22 -0.8
1,818,085 + MPMX19_01726 0.22 -1.0
1,818,085 + MPMX19_01726 0.22 +0.4
1,818,085 + MPMX19_01726 0.22 +1.9
1,818,086 - MPMX19_01726 0.23 -0.3
1,818,086 - MPMX19_01726 0.23 +0.4
1,818,086 - MPMX19_01726 0.23 -0.0
1,818,086 - MPMX19_01726 0.23 +0.1
1,818,149 - MPMX19_01726 0.30 +0.1
1,818,149 - MPMX19_01726 0.30 +1.3
1,818,167 - MPMX19_01726 0.32 +0.3
1,818,167 - MPMX19_01726 0.32 -0.4
1,818,167 - MPMX19_01726 0.32 +1.1

Or see this region's nucleotide sequence