Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01393

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01392 and MPMX19_01393 are separated by 209 nucleotidesMPMX19_01393 and MPMX19_01394 are separated by 109 nucleotidesMPMX19_01394 and MPMX19_01395 are separated by 173 nucleotides MPMX19_01392: MPMX19_01392 - hypothetical protein, at 1,457,558 to 1,459,558 _01392 MPMX19_01393: MPMX19_01393 - hypothetical protein, at 1,459,768 to 1,460,178 _01393 MPMX19_01394: MPMX19_01394 - hypothetical protein, at 1,460,288 to 1,460,722 _01394 MPMX19_01395: MPMX19_01395 - hypothetical protein, at 1,460,896 to 1,461,594 _01395 Position (kb) 1459 1460 1461Strain fitness (log2 ratio) -2 -1 0 1 2at 1458.933 kb on + strand, within MPMX19_01392at 1458.933 kb on + strand, within MPMX19_01392at 1458.934 kb on - strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.038 kb on + strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.039 kb on - strand, within MPMX19_01392at 1459.083 kb on + strand, within MPMX19_01392at 1459.083 kb on + strand, within MPMX19_01392at 1459.083 kb on + strand, within MPMX19_01392at 1459.083 kb on + strand, within MPMX19_01392at 1459.083 kb on + strand, within MPMX19_01392at 1459.083 kb on + strand, within MPMX19_01392at 1459.083 kb on + strand, within MPMX19_01392at 1459.084 kb on - strand, within MPMX19_01392at 1459.084 kb on - strand, within MPMX19_01392at 1459.084 kb on - strand, within MPMX19_01392at 1459.084 kb on - strand, within MPMX19_01392at 1459.084 kb on - strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.092 kb on + strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.093 kb on - strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.095 kb on + strand, within MPMX19_01392at 1459.096 kb on - strand, within MPMX19_01392at 1459.096 kb on - strand, within MPMX19_01392at 1459.096 kb on - strand, within MPMX19_01392at 1459.096 kb on - strand, within MPMX19_01392at 1459.096 kb on - strand, within MPMX19_01392at 1459.096 kb on - strand, within MPMX19_01392at 1459.096 kb on - strand, within MPMX19_01392at 1459.158 kb on + strand, within MPMX19_01392at 1459.159 kb on - strand, within MPMX19_01392at 1459.159 kb on - strand, within MPMX19_01392at 1459.159 kb on - strand, within MPMX19_01392at 1459.159 kb on - strand, within MPMX19_01392at 1459.159 kb on - strand, within MPMX19_01392at 1459.582 kb on + strandat 1459.582 kb on + strandat 1459.582 kb on + strandat 1459.582 kb on + strandat 1459.582 kb on + strandat 1459.582 kb on + strandat 1459.582 kb on + strandat 1459.582 kb on + strandat 1459.582 kb on + strandat 1459.582 kb on + strandat 1459.602 kb on - strandat 1459.612 kb on + strandat 1459.613 kb on - strandat 1459.615 kb on + strandat 1459.616 kb on - strandat 1459.616 kb on - strandat 1459.644 kb on + strandat 1459.650 kb on - strandat 1459.650 kb on - strandat 1459.650 kb on - strandat 1459.961 kb on + strand, within MPMX19_01393at 1460.009 kb on + strand, within MPMX19_01393at 1460.009 kb on + strand, within MPMX19_01393at 1460.010 kb on - strand, within MPMX19_01393at 1460.010 kb on - strand, within MPMX19_01393at 1460.010 kb on - strand, within MPMX19_01393at 1460.010 kb on - strand, within MPMX19_01393at 1460.010 kb on - strand, within MPMX19_01393at 1460.010 kb on - strand, within MPMX19_01393at 1460.010 kb on - strand, within MPMX19_01393at 1460.090 kb on + strand, within MPMX19_01393at 1460.090 kb on + strand, within MPMX19_01393at 1460.090 kb on + strand, within MPMX19_01393at 1460.090 kb on + strand, within MPMX19_01393at 1460.090 kb on + strand, within MPMX19_01393at 1460.090 kb on + strand, within MPMX19_01393at 1460.091 kb on - strand, within MPMX19_01393at 1460.091 kb on - strand, within MPMX19_01393at 1460.091 kb on - strand, within MPMX19_01393at 1460.091 kb on - strand, within MPMX19_01393at 1460.091 kb on - strand, within MPMX19_01393at 1460.091 kb on - strand, within MPMX19_01393at 1460.091 kb on - strand, within MPMX19_01393at 1460.091 kb on - strand, within MPMX19_01393at 1460.476 kb on + strand, within MPMX19_01394at 1460.476 kb on + strand, within MPMX19_01394at 1460.477 kb on - strand, within MPMX19_01394at 1460.477 kb on - strand, within MPMX19_01394at 1460.764 kb on + strandat 1460.764 kb on + strandat 1460.765 kb on - strandat 1460.765 kb on - strandat 1460.765 kb on - strandat 1460.788 kb on + strandat 1460.788 kb on + strandat 1460.788 kb on + strandat 1460.789 kb on - strandat 1460.789 kb on - strandat 1460.801 kb on + strandat 1460.801 kb on + strandat 1460.801 kb on + strandat 1460.802 kb on - strandat 1460.822 kb on - strandat 1460.850 kb on + strandat 1460.851 kb on - strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.897 kb on + strandat 1460.898 kb on - strandat 1460.898 kb on - strandat 1460.898 kb on - strandat 1460.898 kb on - strandat 1460.898 kb on - strandat 1460.898 kb on - strandat 1460.898 kb on - strandat 1460.898 kb on - strandat 1460.898 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
1,458,933 + MPMX19_01392 0.69 -0.9
1,458,933 + MPMX19_01392 0.69 -0.2
1,458,934 - MPMX19_01392 0.69 -0.1
1,459,038 + MPMX19_01392 0.74 -0.3
1,459,038 + MPMX19_01392 0.74 +0.1
1,459,038 + MPMX19_01392 0.74 +0.1
1,459,038 + MPMX19_01392 0.74 -2.6
1,459,038 + MPMX19_01392 0.74 +0.4
1,459,038 + MPMX19_01392 0.74 -1.2
1,459,038 + MPMX19_01392 0.74 +0.1
1,459,038 + MPMX19_01392 0.74 -1.1
1,459,038 + MPMX19_01392 0.74 -1.3
1,459,038 + MPMX19_01392 0.74 +0.8
1,459,038 + MPMX19_01392 0.74 +1.1
1,459,038 + MPMX19_01392 0.74 -0.5
1,459,038 + MPMX19_01392 0.74 -0.3
1,459,038 + MPMX19_01392 0.74 -0.1
1,459,038 + MPMX19_01392 0.74 +0.8
1,459,038 + MPMX19_01392 0.74 +1.4
1,459,038 + MPMX19_01392 0.74 -0.6
1,459,038 + MPMX19_01392 0.74 -0.6
1,459,038 + MPMX19_01392 0.74 -1.2
1,459,038 + MPMX19_01392 0.74 -2.2
1,459,038 + MPMX19_01392 0.74 -1.2
1,459,039 - MPMX19_01392 0.74 -0.5
1,459,039 - MPMX19_01392 0.74 +0.2
1,459,039 - MPMX19_01392 0.74 +0.1
1,459,039 - MPMX19_01392 0.74 +1.3
1,459,039 - MPMX19_01392 0.74 -0.2
1,459,039 - MPMX19_01392 0.74 -0.9
1,459,039 - MPMX19_01392 0.74 -0.5
1,459,039 - MPMX19_01392 0.74 +0.1
1,459,039 - MPMX19_01392 0.74 -0.2
1,459,039 - MPMX19_01392 0.74 -1.4
1,459,039 - MPMX19_01392 0.74 +0.4
1,459,039 - MPMX19_01392 0.74 -0.6
1,459,039 - MPMX19_01392 0.74 +0.7
1,459,039 - MPMX19_01392 0.74 +0.1
1,459,039 - MPMX19_01392 0.74 +0.1
1,459,039 - MPMX19_01392 0.74 -0.9
1,459,039 - MPMX19_01392 0.74 -0.1
1,459,039 - MPMX19_01392 0.74 -0.1
1,459,039 - MPMX19_01392 0.74 -0.3
1,459,039 - MPMX19_01392 0.74 -0.8
1,459,039 - MPMX19_01392 0.74 -0.9
1,459,039 - MPMX19_01392 0.74 +0.7
1,459,039 - MPMX19_01392 0.74 +0.6
1,459,083 + MPMX19_01392 0.76 +0.8
1,459,083 + MPMX19_01392 0.76 -1.2
1,459,083 + MPMX19_01392 0.76 +1.1
1,459,083 + MPMX19_01392 0.76 -0.8
1,459,083 + MPMX19_01392 0.76 +0.3
1,459,083 + MPMX19_01392 0.76 +0.2
1,459,083 + MPMX19_01392 0.76 +0.4
1,459,084 - MPMX19_01392 0.76 +0.6
1,459,084 - MPMX19_01392 0.76 +1.1
1,459,084 - MPMX19_01392 0.76 -0.9
1,459,084 - MPMX19_01392 0.76 -1.2
1,459,084 - MPMX19_01392 0.76 -0.9
1,459,092 + MPMX19_01392 0.77 +0.1
1,459,092 + MPMX19_01392 0.77 -0.0
1,459,092 + MPMX19_01392 0.77 +0.4
1,459,092 + MPMX19_01392 0.77 -1.2
1,459,092 + MPMX19_01392 0.77 -1.5
1,459,092 + MPMX19_01392 0.77 -0.3
1,459,092 + MPMX19_01392 0.77 +0.9
1,459,092 + MPMX19_01392 0.77 -0.5
1,459,092 + MPMX19_01392 0.77 +0.1
1,459,092 + MPMX19_01392 0.77 +0.8
1,459,092 + MPMX19_01392 0.77 -1.3
1,459,092 + MPMX19_01392 0.77 +0.2
1,459,092 + MPMX19_01392 0.77 -0.7
1,459,092 + MPMX19_01392 0.77 -0.2
1,459,092 + MPMX19_01392 0.77 +1.1
1,459,092 + MPMX19_01392 0.77 -1.7
1,459,092 + MPMX19_01392 0.77 +1.8
1,459,092 + MPMX19_01392 0.77 -0.9
1,459,092 + MPMX19_01392 0.77 +0.9
1,459,092 + MPMX19_01392 0.77 +0.1
1,459,092 + MPMX19_01392 0.77 +1.1
1,459,093 - MPMX19_01392 0.77 -1.5
1,459,093 - MPMX19_01392 0.77 -1.2
1,459,093 - MPMX19_01392 0.77 -1.7
1,459,093 - MPMX19_01392 0.77 -1.4
1,459,093 - MPMX19_01392 0.77 -0.6
1,459,093 - MPMX19_01392 0.77 -0.5
1,459,093 - MPMX19_01392 0.77 +0.1
1,459,093 - MPMX19_01392 0.77 +0.7
1,459,093 - MPMX19_01392 0.77 -1.2
1,459,093 - MPMX19_01392 0.77 -0.2
1,459,093 - MPMX19_01392 0.77 -1.2
1,459,093 - MPMX19_01392 0.77 +0.6
1,459,093 - MPMX19_01392 0.77 -0.9
1,459,093 - MPMX19_01392 0.77 -1.3
1,459,093 - MPMX19_01392 0.77 +0.0
1,459,093 - MPMX19_01392 0.77 -0.5
1,459,093 - MPMX19_01392 0.77 -0.9
1,459,093 - MPMX19_01392 0.77 -1.9
1,459,095 + MPMX19_01392 0.77 -1.9
1,459,095 + MPMX19_01392 0.77 +0.4
1,459,095 + MPMX19_01392 0.77 -1.5
1,459,095 + MPMX19_01392 0.77 -0.0
1,459,095 + MPMX19_01392 0.77 -0.9
1,459,095 + MPMX19_01392 0.77 +1.0
1,459,095 + MPMX19_01392 0.77 +0.2
1,459,095 + MPMX19_01392 0.77 +0.1
1,459,095 + MPMX19_01392 0.77 -0.1
1,459,095 + MPMX19_01392 0.77 +0.4
1,459,096 - MPMX19_01392 0.77 +0.3
1,459,096 - MPMX19_01392 0.77 -0.6
1,459,096 - MPMX19_01392 0.77 -0.5
1,459,096 - MPMX19_01392 0.77 -1.2
1,459,096 - MPMX19_01392 0.77 -0.3
1,459,096 - MPMX19_01392 0.77 +0.6
1,459,096 - MPMX19_01392 0.77 +0.4
1,459,158 + MPMX19_01392 0.80 +0.8
1,459,159 - MPMX19_01392 0.80 -0.9
1,459,159 - MPMX19_01392 0.80 +1.1
1,459,159 - MPMX19_01392 0.80 +1.5
1,459,159 - MPMX19_01392 0.80 -0.5
1,459,159 - MPMX19_01392 0.80 -1.0
1,459,582 + -2.2
1,459,582 + -1.8
1,459,582 + +0.2
1,459,582 + +0.1
1,459,582 + -0.7
1,459,582 + -0.7
1,459,582 + -0.5
1,459,582 + -0.7
1,459,582 + -1.0
1,459,582 + -0.8
1,459,602 - -0.5
1,459,612 + -1.9
1,459,613 - +0.1
1,459,615 + -0.6
1,459,616 - -0.9
1,459,616 - -1.7
1,459,644 + -0.9
1,459,650 - +0.3
1,459,650 - -1.2
1,459,650 - +0.1
1,459,961 + MPMX19_01393 0.47 +1.1
1,460,009 + MPMX19_01393 0.59 +0.2
1,460,009 + MPMX19_01393 0.59 -0.2
1,460,010 - MPMX19_01393 0.59 -0.5
1,460,010 - MPMX19_01393 0.59 -1.6
1,460,010 - MPMX19_01393 0.59 -0.4
1,460,010 - MPMX19_01393 0.59 +1.0
1,460,010 - MPMX19_01393 0.59 -2.1
1,460,010 - MPMX19_01393 0.59 +0.6
1,460,010 - MPMX19_01393 0.59 -0.3
1,460,090 + MPMX19_01393 0.78 -0.5
1,460,090 + MPMX19_01393 0.78 -0.7
1,460,090 + MPMX19_01393 0.78 -0.5
1,460,090 + MPMX19_01393 0.78 -0.1
1,460,090 + MPMX19_01393 0.78 +0.5
1,460,090 + MPMX19_01393 0.78 +0.9
1,460,091 - MPMX19_01393 0.79 -0.6
1,460,091 - MPMX19_01393 0.79 -0.8
1,460,091 - MPMX19_01393 0.79 +0.7
1,460,091 - MPMX19_01393 0.79 +0.1
1,460,091 - MPMX19_01393 0.79 +0.1
1,460,091 - MPMX19_01393 0.79 +1.1
1,460,091 - MPMX19_01393 0.79 +0.4
1,460,091 - MPMX19_01393 0.79 -1.2
1,460,476 + MPMX19_01394 0.43 -0.8
1,460,476 + MPMX19_01394 0.43 +0.5
1,460,477 - MPMX19_01394 0.43 +2.7
1,460,477 - MPMX19_01394 0.43 -1.5
1,460,764 + -1.1
1,460,764 + -0.9
1,460,765 - +1.4
1,460,765 - -0.7
1,460,765 - +1.1
1,460,788 + +0.1
1,460,788 + -0.1
1,460,788 + -1.5
1,460,789 - -0.3
1,460,789 - -0.6
1,460,801 + +0.5
1,460,801 + -1.5
1,460,801 + -1.0
1,460,802 - +0.7
1,460,822 - -1.7
1,460,850 + -0.2
1,460,851 - -1.5
1,460,897 + -0.9
1,460,897 + +0.1
1,460,897 + -0.9
1,460,897 + -0.9
1,460,897 + -0.4
1,460,897 + +0.4
1,460,897 + -0.3
1,460,897 + +0.3
1,460,897 + -0.2
1,460,897 + -1.9
1,460,897 + -1.0
1,460,897 + +0.6
1,460,898 - -1.5
1,460,898 - -0.9
1,460,898 - -0.5
1,460,898 - +1.1
1,460,898 - -0.5
1,460,898 - -0.5
1,460,898 - -0.9
1,460,898 - +1.1
1,460,898 - -0.3

Or see this region's nucleotide sequence