Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01162 and MPMX19_01163 are separated by 30 nucleotides MPMX19_01163 and MPMX19_01164 are separated by 11 nucleotides MPMX19_01164 and MPMX19_01165 are separated by 125 nucleotides MPMX19_01165 and MPMX19_01166 are separated by 225 nucleotides
MPMX19_01162: MPMX19_01162 - hypothetical protein, at 1,200,919 to 1,201,296
_01162
MPMX19_01163: MPMX19_01163 - Protein translocase subunit SecF, at 1,201,327 to 1,202,283
_01163
MPMX19_01164: MPMX19_01164 - Protein translocase subunit SecD, at 1,202,295 to 1,203,893
_01164
MPMX19_01165: MPMX19_01165 - hypothetical protein, at 1,204,019 to 1,204,444
_01165
MPMX19_01166: MPMX19_01166 - hypothetical protein, at 1,204,670 to 1,205,563
_01166
Position (kb)
1202
1203
1204 Strain fitness (log2 ratio)
-1
0
1 at 1201.297 kb on - strand at 1201.297 kb on - strand at 1201.297 kb on - strand at 1201.297 kb on - strand at 1201.297 kb on - strand at 1201.297 kb on - strand at 1204.021 kb on - strand at 1204.021 kb on - strand at 1204.458 kb on - strand at 1204.458 kb on - strand at 1204.458 kb on - strand at 1204.458 kb on - strand at 1204.458 kb on - strand at 1204.508 kb on - strand at 1204.508 kb on - strand at 1204.508 kb on - strand at 1204.508 kb on - strand at 1204.508 kb on - strand at 1204.510 kb on - strand at 1204.510 kb on - strand at 1204.590 kb on + strand at 1204.590 kb on + strand at 1204.591 kb on - strand at 1204.591 kb on - strand at 1204.669 kb on + strand at 1204.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 1,201,297 - -0.9 1,201,297 - +0.1 1,201,297 - +0.1 1,201,297 - -0.9 1,201,297 - +0.1 1,201,297 - +0.1 1,204,021 - +1.1 1,204,021 - -1.2 1,204,458 - +0.1 1,204,458 - +0.4 1,204,458 - -0.0 1,204,458 - +1.1 1,204,458 - -0.6 1,204,508 - +0.5 1,204,508 - +0.8 1,204,508 - -0.1 1,204,508 - +0.1 1,204,508 - -0.4 1,204,510 - +0.3 1,204,510 - -0.2 1,204,590 + -0.0 1,204,590 + -0.7 1,204,591 - +0.2 1,204,591 - -0.5 1,204,669 + -0.2 1,204,670 - -0.7
Or see this region's nucleotide sequence