Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01092

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01090 and MPMX19_01091 are separated by 96 nucleotidesMPMX19_01091 and MPMX19_01092 are separated by 221 nucleotidesMPMX19_01092 and MPMX19_01093 are separated by 231 nucleotides MPMX19_01090: MPMX19_01090 - Phyllosphere-induced regulator PhyR, at 1,126,802 to 1,127,605 _01090 MPMX19_01091: MPMX19_01091 - hypothetical protein, at 1,127,702 to 1,127,959 _01091 MPMX19_01092: MPMX19_01092 - Ribulose-phosphate 3-epimerase, at 1,128,181 to 1,128,834 _01092 MPMX19_01093: MPMX19_01093 - Molybdate-binding protein ModA, at 1,129,066 to 1,129,875 _01093 Position (kb) 1128 1129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1127.296 kb on + strand, within MPMX19_01090at 1127.297 kb on - strand, within MPMX19_01090at 1127.621 kb on + strandat 1127.621 kb on + strandat 1127.621 kb on + strandat 1127.621 kb on + strandat 1127.621 kb on + strandat 1127.621 kb on + strandat 1127.621 kb on + strandat 1127.621 kb on + strandat 1127.621 kb on + strandat 1127.621 kb on + strandat 1127.622 kb on - strandat 1127.622 kb on - strandat 1127.622 kb on - strandat 1127.622 kb on - strandat 1127.622 kb on - strandat 1127.622 kb on - strandat 1127.622 kb on - strandat 1127.622 kb on - strandat 1127.622 kb on - strandat 1127.622 kb on - strandat 1127.624 kb on + strandat 1127.624 kb on + strandat 1127.624 kb on + strandat 1127.624 kb on + strandat 1127.624 kb on + strandat 1127.624 kb on + strandat 1127.625 kb on - strandat 1127.625 kb on - strandat 1127.625 kb on - strandat 1127.625 kb on - strandat 1127.625 kb on - strandat 1127.625 kb on - strandat 1127.625 kb on - strandat 1127.625 kb on - strandat 1127.625 kb on - strandat 1127.625 kb on - strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.656 kb on + strandat 1127.657 kb on - strandat 1127.657 kb on - strandat 1127.657 kb on - strandat 1127.657 kb on - strandat 1127.657 kb on - strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.703 kb on + strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.704 kb on - strandat 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.736 kb on + strand, within MPMX19_01091at 1127.737 kb on - strand, within MPMX19_01091at 1127.737 kb on - strand, within MPMX19_01091at 1127.737 kb on - strand, within MPMX19_01091at 1127.737 kb on - strand, within MPMX19_01091at 1127.737 kb on - strand, within MPMX19_01091at 1127.737 kb on - strand, within MPMX19_01091at 1127.737 kb on - strand, within MPMX19_01091at 1127.737 kb on - strand, within MPMX19_01091at 1127.737 kb on - strand, within MPMX19_01091at 1127.803 kb on - strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.826 kb on + strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1127.827 kb on - strand, within MPMX19_01091at 1128.054 kb on + strandat 1128.054 kb on + strandat 1128.054 kb on + strandat 1128.054 kb on + strandat 1128.054 kb on + strandat 1128.054 kb on + strandat 1128.054 kb on + strandat 1128.055 kb on - strandat 1128.086 kb on + strandat 1128.086 kb on + strandat 1128.087 kb on - strandat 1128.087 kb on - strandat 1128.087 kb on - strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.178 kb on - strandat 1128.178 kb on - strandat 1128.178 kb on - strandat 1128.178 kb on - strandat 1128.178 kb on - strandat 1128.891 kb on - strandat 1128.891 kb on - strandat 1128.891 kb on - strandat 1128.900 kb on + strandat 1128.900 kb on + strandat 1128.900 kb on + strandat 1128.900 kb on + strandat 1128.901 kb on - strandat 1128.901 kb on - strandat 1128.937 kb on - strandat 1129.020 kb on - strandat 1129.034 kb on - strandat 1129.203 kb on + strand, within MPMX19_01093at 1129.203 kb on + strand, within MPMX19_01093at 1129.203 kb on + strand, within MPMX19_01093at 1129.203 kb on + strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.543 kb on + strand, within MPMX19_01093at 1129.543 kb on + strand, within MPMX19_01093at 1129.543 kb on + strand, within MPMX19_01093at 1129.544 kb on - strand, within MPMX19_01093at 1129.544 kb on - strand, within MPMX19_01093at 1129.544 kb on - strand, within MPMX19_01093at 1129.544 kb on - strand, within MPMX19_01093at 1129.669 kb on + strand, within MPMX19_01093at 1129.669 kb on + strand, within MPMX19_01093at 1129.670 kb on - strand, within MPMX19_01093at 1129.670 kb on - strand, within MPMX19_01093at 1129.670 kb on - strand, within MPMX19_01093at 1129.670 kb on - strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.733 kb on - strand, within MPMX19_01093at 1129.733 kb on - strand, within MPMX19_01093at 1129.747 kb on + strand, within MPMX19_01093at 1129.747 kb on + strand, within MPMX19_01093at 1129.748 kb on - strand, within MPMX19_01093at 1129.748 kb on - strand, within MPMX19_01093at 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,127,296 + MPMX19_01090 0.61 -0.2
1,127,297 - MPMX19_01090 0.62 -0.5
1,127,621 + +0.1
1,127,621 + -1.2
1,127,621 + -0.5
1,127,621 + +0.1
1,127,621 + -0.3
1,127,621 + +0.3
1,127,621 + -0.9
1,127,621 + +1.0
1,127,621 + +1.7
1,127,621 + -0.2
1,127,622 - -0.3
1,127,622 - -1.2
1,127,622 - +1.1
1,127,622 - +0.6
1,127,622 - -1.6
1,127,622 - -0.9
1,127,622 - -0.9
1,127,622 - -0.1
1,127,622 - +0.1
1,127,622 - -1.5
1,127,624 + -1.0
1,127,624 + -1.6
1,127,624 + -1.5
1,127,624 + -0.3
1,127,624 + -0.9
1,127,624 + -0.2
1,127,625 - -0.5
1,127,625 - -0.6
1,127,625 - -0.9
1,127,625 - -2.4
1,127,625 - -0.6
1,127,625 - -0.3
1,127,625 - -0.2
1,127,625 - -0.2
1,127,625 - -1.5
1,127,625 - -0.0
1,127,656 + -0.1
1,127,656 + -1.0
1,127,656 + +0.3
1,127,656 + +0.5
1,127,656 + -1.5
1,127,656 + -0.2
1,127,656 + +1.1
1,127,656 + -0.0
1,127,656 + +0.1
1,127,656 + -0.2
1,127,656 + -0.9
1,127,657 - +0.4
1,127,657 - +1.1
1,127,657 - -0.3
1,127,657 - -1.5
1,127,657 - -1.3
1,127,703 + -3.3
1,127,703 + -1.2
1,127,703 + +0.5
1,127,703 + +0.5
1,127,703 + +1.1
1,127,703 + -0.0
1,127,703 + -0.9
1,127,703 + +0.8
1,127,703 + +0.1
1,127,703 + +1.0
1,127,703 + +0.1
1,127,704 - +0.8
1,127,704 - -0.0
1,127,704 - +0.4
1,127,704 - -1.2
1,127,704 - -0.9
1,127,704 - -0.2
1,127,704 - +0.1
1,127,704 - -1.5
1,127,704 - -0.2
1,127,704 - -0.7
1,127,704 - -0.2
1,127,704 - +0.6
1,127,704 - +0.4
1,127,704 - -1.9
1,127,704 - -1.2
1,127,704 - -1.2
1,127,704 - -2.1
1,127,736 + MPMX19_01091 0.13 +0.1
1,127,736 + MPMX19_01091 0.13 -1.2
1,127,736 + MPMX19_01091 0.13 +1.4
1,127,736 + MPMX19_01091 0.13 +2.1
1,127,736 + MPMX19_01091 0.13 +0.1
1,127,736 + MPMX19_01091 0.13 +1.7
1,127,736 + MPMX19_01091 0.13 -0.5
1,127,736 + MPMX19_01091 0.13 -1.5
1,127,736 + MPMX19_01091 0.13 -0.4
1,127,736 + MPMX19_01091 0.13 +1.1
1,127,736 + MPMX19_01091 0.13 -0.3
1,127,736 + MPMX19_01091 0.13 -1.7
1,127,736 + MPMX19_01091 0.13 -0.7
1,127,737 - MPMX19_01091 0.14 +1.7
1,127,737 - MPMX19_01091 0.14 -0.8
1,127,737 - MPMX19_01091 0.14 +1.9
1,127,737 - MPMX19_01091 0.14 +0.5
1,127,737 - MPMX19_01091 0.14 +1.1
1,127,737 - MPMX19_01091 0.14 -0.1
1,127,737 - MPMX19_01091 0.14 +0.7
1,127,737 - MPMX19_01091 0.14 +1.5
1,127,737 - MPMX19_01091 0.14 +0.7
1,127,803 - MPMX19_01091 0.39 +2.7
1,127,826 + MPMX19_01091 0.48 -0.9
1,127,826 + MPMX19_01091 0.48 -0.9
1,127,826 + MPMX19_01091 0.48 +0.8
1,127,826 + MPMX19_01091 0.48 +1.1
1,127,826 + MPMX19_01091 0.48 -0.2
1,127,826 + MPMX19_01091 0.48 -0.9
1,127,826 + MPMX19_01091 0.48 -0.0
1,127,826 + MPMX19_01091 0.48 -0.2
1,127,826 + MPMX19_01091 0.48 +0.5
1,127,826 + MPMX19_01091 0.48 -2.3
1,127,826 + MPMX19_01091 0.48 +1.4
1,127,826 + MPMX19_01091 0.48 +0.5
1,127,826 + MPMX19_01091 0.48 -0.2
1,127,826 + MPMX19_01091 0.48 -1.0
1,127,826 + MPMX19_01091 0.48 -0.5
1,127,826 + MPMX19_01091 0.48 +2.9
1,127,826 + MPMX19_01091 0.48 -1.4
1,127,827 - MPMX19_01091 0.48 -1.9
1,127,827 - MPMX19_01091 0.48 +0.1
1,127,827 - MPMX19_01091 0.48 -0.7
1,127,827 - MPMX19_01091 0.48 +0.5
1,127,827 - MPMX19_01091 0.48 -0.0
1,127,827 - MPMX19_01091 0.48 -0.9
1,127,827 - MPMX19_01091 0.48 -1.4
1,127,827 - MPMX19_01091 0.48 -0.9
1,127,827 - MPMX19_01091 0.48 -0.2
1,127,827 - MPMX19_01091 0.48 +0.1
1,127,827 - MPMX19_01091 0.48 -1.2
1,127,827 - MPMX19_01091 0.48 -0.5
1,127,827 - MPMX19_01091 0.48 +0.5
1,127,827 - MPMX19_01091 0.48 -1.7
1,127,827 - MPMX19_01091 0.48 -0.9
1,127,827 - MPMX19_01091 0.48 -0.5
1,127,827 - MPMX19_01091 0.48 +0.8
1,127,827 - MPMX19_01091 0.48 -1.5
1,127,827 - MPMX19_01091 0.48 +0.7
1,127,827 - MPMX19_01091 0.48 +0.5
1,128,054 + -2.0
1,128,054 + +0.2
1,128,054 + +0.5
1,128,054 + +1.0
1,128,054 + -0.2
1,128,054 + +0.4
1,128,054 + +2.1
1,128,055 - +0.1
1,128,086 + -0.2
1,128,086 + +0.4
1,128,087 - +1.4
1,128,087 - -0.8
1,128,087 - +0.5
1,128,177 + -0.5
1,128,177 + -0.1
1,128,177 + +1.9
1,128,177 + +0.8
1,128,177 + -0.1
1,128,177 + +0.5
1,128,177 + -0.9
1,128,178 - -0.9
1,128,178 - +0.1
1,128,178 - +0.4
1,128,178 - -0.2
1,128,178 - +1.1
1,128,891 - -0.0
1,128,891 - -0.8
1,128,891 - -0.6
1,128,900 + -1.5
1,128,900 + -1.7
1,128,900 + -0.6
1,128,900 + -1.2
1,128,901 - +0.5
1,128,901 - -0.4
1,128,937 - -1.5
1,129,020 - -0.9
1,129,034 - -0.7
1,129,203 + MPMX19_01093 0.17 +0.1
1,129,203 + MPMX19_01093 0.17 +0.7
1,129,203 + MPMX19_01093 0.17 -1.7
1,129,203 + MPMX19_01093 0.17 +0.7
1,129,204 - MPMX19_01093 0.17 +0.5
1,129,204 - MPMX19_01093 0.17 -1.8
1,129,204 - MPMX19_01093 0.17 -1.7
1,129,204 - MPMX19_01093 0.17 -0.9
1,129,204 - MPMX19_01093 0.17 +0.1
1,129,204 - MPMX19_01093 0.17 -0.9
1,129,357 + MPMX19_01093 0.36 +0.1
1,129,357 + MPMX19_01093 0.36 +0.7
1,129,357 + MPMX19_01093 0.36 +0.3
1,129,357 + MPMX19_01093 0.36 +0.5
1,129,357 + MPMX19_01093 0.36 +0.3
1,129,357 + MPMX19_01093 0.36 -0.3
1,129,357 + MPMX19_01093 0.36 -0.2
1,129,357 + MPMX19_01093 0.36 -0.5
1,129,357 + MPMX19_01093 0.36 -1.2
1,129,358 - MPMX19_01093 0.36 +0.7
1,129,358 - MPMX19_01093 0.36 -0.9
1,129,358 - MPMX19_01093 0.36 +0.1
1,129,358 - MPMX19_01093 0.36 -0.3
1,129,358 - MPMX19_01093 0.36 -1.5
1,129,358 - MPMX19_01093 0.36 -0.4
1,129,543 + MPMX19_01093 0.59 +1.0
1,129,543 + MPMX19_01093 0.59 +0.4
1,129,543 + MPMX19_01093 0.59 -0.9
1,129,544 - MPMX19_01093 0.59 -0.2
1,129,544 - MPMX19_01093 0.59 -0.9
1,129,544 - MPMX19_01093 0.59 -0.1
1,129,544 - MPMX19_01093 0.59 -0.5
1,129,669 + MPMX19_01093 0.74 +0.1
1,129,669 + MPMX19_01093 0.74 +1.5
1,129,670 - MPMX19_01093 0.75 +1.9
1,129,670 - MPMX19_01093 0.75 -2.3
1,129,670 - MPMX19_01093 0.75 +0.7
1,129,670 - MPMX19_01093 0.75 -1.5
1,129,732 + MPMX19_01093 0.82 +0.1
1,129,732 + MPMX19_01093 0.82 +0.3
1,129,732 + MPMX19_01093 0.82 -0.5
1,129,732 + MPMX19_01093 0.82 +1.1
1,129,732 + MPMX19_01093 0.82 +2.7
1,129,733 - MPMX19_01093 0.82 -1.5
1,129,733 - MPMX19_01093 0.82 -0.3
1,129,747 + MPMX19_01093 0.84 -0.9
1,129,747 + MPMX19_01093 0.84 -1.0
1,129,748 - MPMX19_01093 0.84 -1.2
1,129,748 - MPMX19_01093 0.84 -0.1
1,129,804 + -0.7
1,129,804 + -1.2
1,129,804 + -0.3
1,129,804 + +0.5
1,129,804 + +1.1
1,129,804 + +1.1
1,129,804 + -1.2
1,129,805 - +0.1
1,129,805 - -0.4
1,129,805 - -0.1
1,129,805 - +0.4
1,129,805 - -0.9
1,129,805 - -0.0
1,129,805 - -1.1
1,129,805 - -0.1
1,129,805 - -0.3

Or see this region's nucleotide sequence