Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00870

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00869 and MPMX19_00870 are separated by 91 nucleotidesMPMX19_00870 and MPMX19_00871 are separated by 88 nucleotides MPMX19_00869: MPMX19_00869 - Protein RecA, at 900,137 to 901,216 _00869 MPMX19_00870: MPMX19_00870 - hypothetical protein, at 901,308 to 901,874 _00870 MPMX19_00871: MPMX19_00871 - hypothetical protein, at 901,963 to 904,572 _00871 Position (kb) 901 902Strain fitness (log2 ratio) -2 -1 0 1 2at 900.363 kb on - strand, within MPMX19_00869at 900.363 kb on - strand, within MPMX19_00869at 900.959 kb on + strand, within MPMX19_00869at 901.046 kb on + strand, within MPMX19_00869at 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.309 kb on + strandat 901.310 kb on - strandat 901.310 kb on - strandat 901.310 kb on - strandat 901.310 kb on - strandat 901.310 kb on - strandat 901.310 kb on - strandat 901.310 kb on - strandat 901.310 kb on - strandat 901.310 kb on - strandat 901.310 kb on - strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.317 kb on + strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.318 kb on - strandat 901.325 kb on + strandat 901.325 kb on + strandat 901.325 kb on + strandat 901.325 kb on + strandat 901.325 kb on + strandat 901.325 kb on + strandat 901.326 kb on - strandat 901.326 kb on - strandat 901.326 kb on - strandat 901.326 kb on - strandat 901.326 kb on - strandat 901.369 kb on + strand, within MPMX19_00870at 901.369 kb on + strand, within MPMX19_00870at 901.369 kb on + strand, within MPMX19_00870at 901.369 kb on + strand, within MPMX19_00870at 901.369 kb on + strand, within MPMX19_00870at 901.369 kb on + strand, within MPMX19_00870at 901.370 kb on - strand, within MPMX19_00870at 901.370 kb on - strand, within MPMX19_00870at 901.693 kb on + strand, within MPMX19_00870at 901.693 kb on + strand, within MPMX19_00870at 901.693 kb on + strand, within MPMX19_00870at 901.693 kb on + strand, within MPMX19_00870at 901.693 kb on + strand, within MPMX19_00870at 901.693 kb on - strand, within MPMX19_00870at 901.694 kb on - strand, within MPMX19_00870at 901.694 kb on - strand, within MPMX19_00870at 901.694 kb on - strand, within MPMX19_00870at 901.955 kb on + strandat 901.955 kb on + strandat 901.955 kb on + strandat 901.955 kb on + strandat 901.955 kb on + strandat 901.955 kb on + strandat 901.956 kb on - strandat 901.956 kb on - strandat 901.956 kb on - strandat 901.956 kb on - strandat 901.956 kb on - strandat 901.956 kb on - strandat 901.956 kb on - strandat 901.956 kb on - strandat 901.956 kb on - strandat 901.956 kb on - strandat 902.372 kb on + strand, within MPMX19_00871at 902.372 kb on + strand, within MPMX19_00871at 902.373 kb on - strand, within MPMX19_00871at 902.373 kb on - strand, within MPMX19_00871at 902.453 kb on + strand, within MPMX19_00871at 902.454 kb on - strand, within MPMX19_00871at 902.454 kb on - strand, within MPMX19_00871at 902.558 kb on + strand, within MPMX19_00871at 902.558 kb on + strand, within MPMX19_00871at 902.558 kb on + strand, within MPMX19_00871at 902.558 kb on + strand, within MPMX19_00871at 902.558 kb on + strand, within MPMX19_00871at 902.558 kb on + strand, within MPMX19_00871at 902.558 kb on + strand, within MPMX19_00871at 902.558 kb on + strand, within MPMX19_00871at 902.559 kb on - strand, within MPMX19_00871at 902.559 kb on - strand, within MPMX19_00871at 902.559 kb on - strand, within MPMX19_00871at 902.636 kb on + strand, within MPMX19_00871at 902.636 kb on + strand, within MPMX19_00871at 902.636 kb on + strand, within MPMX19_00871at 902.637 kb on - strand, within MPMX19_00871at 902.637 kb on - strand, within MPMX19_00871at 902.637 kb on - strand, within MPMX19_00871at 902.663 kb on + strand, within MPMX19_00871at 902.663 kb on + strand, within MPMX19_00871at 902.663 kb on + strand, within MPMX19_00871at 902.663 kb on + strand, within MPMX19_00871at 902.664 kb on - strand, within MPMX19_00871at 902.699 kb on + strand, within MPMX19_00871at 902.699 kb on + strand, within MPMX19_00871at 902.700 kb on - strand, within MPMX19_00871at 902.714 kb on + strand, within MPMX19_00871at 902.714 kb on + strand, within MPMX19_00871at 902.714 kb on + strand, within MPMX19_00871at 902.714 kb on + strand, within MPMX19_00871at 902.714 kb on + strand, within MPMX19_00871at 902.714 kb on + strand, within MPMX19_00871at 902.715 kb on - strand, within MPMX19_00871at 902.715 kb on - strand, within MPMX19_00871at 902.715 kb on - strand, within MPMX19_00871at 902.715 kb on - strand, within MPMX19_00871at 902.715 kb on - strand, within MPMX19_00871at 902.715 kb on - strand, within MPMX19_00871at 902.715 kb on - strand, within MPMX19_00871at 902.715 kb on - strand, within MPMX19_00871at 902.715 kb on - strand, within MPMX19_00871at 902.726 kb on + strand, within MPMX19_00871at 902.726 kb on + strand, within MPMX19_00871at 902.726 kb on + strand, within MPMX19_00871at 902.726 kb on + strand, within MPMX19_00871at 902.726 kb on + strand, within MPMX19_00871at 902.727 kb on - strand, within MPMX19_00871at 902.727 kb on - strand, within MPMX19_00871at 902.727 kb on - strand, within MPMX19_00871at 902.727 kb on - strand, within MPMX19_00871at 902.727 kb on - strand, within MPMX19_00871at 902.727 kb on - strand, within MPMX19_00871at 902.727 kb on - strand, within MPMX19_00871at 902.727 kb on - strand, within MPMX19_00871at 902.727 kb on - strand, within MPMX19_00871

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
900,363 - MPMX19_00869 0.21 +2.4
900,363 - MPMX19_00869 0.21 -0.5
900,959 + MPMX19_00869 0.76 -2.6
901,046 + MPMX19_00869 0.84 -0.5
901,309 + -0.2
901,309 + +0.2
901,309 + -0.5
901,309 + -0.2
901,309 + +0.1
901,309 + -2.4
901,309 + -0.3
901,309 + -1.1
901,309 + +1.8
901,309 + -0.7
901,309 + +0.8
901,309 + -1.7
901,309 + -0.9
901,310 - -1.2
901,310 - -1.1
901,310 - -0.2
901,310 - -0.5
901,310 - +1.3
901,310 - +0.1
901,310 - -0.7
901,310 - +0.8
901,310 - -0.0
901,310 - +0.5
901,317 + +0.1
901,317 + -0.2
901,317 + +0.5
901,317 + +1.1
901,317 + +0.5
901,317 + +0.8
901,317 + +1.7
901,317 + -0.8
901,317 + -0.5
901,317 + -0.3
901,317 + +0.3
901,317 + -1.9
901,317 + +0.1
901,317 + -0.4
901,317 + -1.1
901,317 + +0.9
901,317 + -0.5
901,318 - +0.4
901,318 - -1.5
901,318 - -0.5
901,318 - +0.7
901,318 - -0.1
901,318 - -0.2
901,318 - +0.7
901,318 - -1.6
901,318 - +0.4
901,318 - -0.5
901,318 - -1.7
901,318 - +1.5
901,318 - -1.1
901,318 - +0.5
901,318 - -0.9
901,325 + +0.1
901,325 + +0.5
901,325 + -1.5
901,325 + -0.5
901,325 + +1.8
901,325 + -1.2
901,326 - -1.5
901,326 - -0.9
901,326 - +1.1
901,326 - -0.1
901,326 - +1.1
901,369 + MPMX19_00870 0.11 -0.2
901,369 + MPMX19_00870 0.11 -1.2
901,369 + MPMX19_00870 0.11 -1.7
901,369 + MPMX19_00870 0.11 -0.7
901,369 + MPMX19_00870 0.11 +0.1
901,369 + MPMX19_00870 0.11 -0.5
901,370 - MPMX19_00870 0.11 +1.2
901,370 - MPMX19_00870 0.11 -1.6
901,693 + MPMX19_00870 0.68 +1.1
901,693 + MPMX19_00870 0.68 +1.4
901,693 + MPMX19_00870 0.68 +1.1
901,693 + MPMX19_00870 0.68 -0.3
901,693 + MPMX19_00870 0.68 +2.1
901,693 - MPMX19_00870 0.68 -0.9
901,694 - MPMX19_00870 0.68 +0.7
901,694 - MPMX19_00870 0.68 -0.9
901,694 - MPMX19_00870 0.68 +0.5
901,955 + -1.7
901,955 + -0.1
901,955 + +0.5
901,955 + -2.2
901,955 + -0.5
901,955 + -1.7
901,956 - -1.2
901,956 - -0.5
901,956 - +0.1
901,956 - +0.4
901,956 - +0.2
901,956 - +0.6
901,956 - +0.7
901,956 - +0.9
901,956 - +0.9
901,956 - +0.7
902,372 + MPMX19_00871 0.16 +0.1
902,372 + MPMX19_00871 0.16 -0.9
902,373 - MPMX19_00871 0.16 +0.7
902,373 - MPMX19_00871 0.16 -0.2
902,453 + MPMX19_00871 0.19 -0.5
902,454 - MPMX19_00871 0.19 +1.4
902,454 - MPMX19_00871 0.19 -0.6
902,558 + MPMX19_00871 0.23 +0.4
902,558 + MPMX19_00871 0.23 +0.2
902,558 + MPMX19_00871 0.23 +0.6
902,558 + MPMX19_00871 0.23 +1.9
902,558 + MPMX19_00871 0.23 -0.6
902,558 + MPMX19_00871 0.23 +1.3
902,558 + MPMX19_00871 0.23 -1.5
902,558 + MPMX19_00871 0.23 -0.4
902,559 - MPMX19_00871 0.23 +0.4
902,559 - MPMX19_00871 0.23 -0.9
902,559 - MPMX19_00871 0.23 +0.9
902,636 + MPMX19_00871 0.26 -1.3
902,636 + MPMX19_00871 0.26 -0.2
902,636 + MPMX19_00871 0.26 -1.7
902,637 - MPMX19_00871 0.26 +0.4
902,637 - MPMX19_00871 0.26 -0.2
902,637 - MPMX19_00871 0.26 -0.6
902,663 + MPMX19_00871 0.27 -0.5
902,663 + MPMX19_00871 0.27 -0.5
902,663 + MPMX19_00871 0.27 +0.3
902,663 + MPMX19_00871 0.27 -0.1
902,664 - MPMX19_00871 0.27 -1.5
902,699 + MPMX19_00871 0.28 +1.3
902,699 + MPMX19_00871 0.28 +0.6
902,700 - MPMX19_00871 0.28 -0.2
902,714 + MPMX19_00871 0.29 +0.4
902,714 + MPMX19_00871 0.29 +1.1
902,714 + MPMX19_00871 0.29 -0.7
902,714 + MPMX19_00871 0.29 -0.5
902,714 + MPMX19_00871 0.29 +0.1
902,714 + MPMX19_00871 0.29 -0.5
902,715 - MPMX19_00871 0.29 +1.0
902,715 - MPMX19_00871 0.29 +0.4
902,715 - MPMX19_00871 0.29 +0.1
902,715 - MPMX19_00871 0.29 +0.1
902,715 - MPMX19_00871 0.29 +0.9
902,715 - MPMX19_00871 0.29 +0.3
902,715 - MPMX19_00871 0.29 +0.1
902,715 - MPMX19_00871 0.29 +2.3
902,715 - MPMX19_00871 0.29 +0.4
902,726 + MPMX19_00871 0.29 +1.1
902,726 + MPMX19_00871 0.29 -0.5
902,726 + MPMX19_00871 0.29 +0.6
902,726 + MPMX19_00871 0.29 -1.2
902,726 + MPMX19_00871 0.29 +0.5
902,727 - MPMX19_00871 0.29 +0.5
902,727 - MPMX19_00871 0.29 +0.1
902,727 - MPMX19_00871 0.29 +1.5
902,727 - MPMX19_00871 0.29 -0.2
902,727 - MPMX19_00871 0.29 +1.3
902,727 - MPMX19_00871 0.29 +0.5
902,727 - MPMX19_00871 0.29 -1.5
902,727 - MPMX19_00871 0.29 -1.1
902,727 - MPMX19_00871 0.29 +0.1

Or see this region's nucleotide sequence