Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00677

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00676 and MPMX19_00677 are separated by 99 nucleotidesMPMX19_00677 and MPMX19_00678 are separated by 115 nucleotides MPMX19_00676: MPMX19_00676 - hypothetical protein, at 698,370 to 699,515 _00676 MPMX19_00677: MPMX19_00677 - hypothetical protein, at 699,615 to 700,406 _00677 MPMX19_00678: MPMX19_00678 - Inositol-1-monophosphatase, at 700,522 to 701,319 _00678 Position (kb) 699 700 701Strain fitness (log2 ratio) -2 -1 0 1 2at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.780 kb on - strand, within MPMX19_00676at 698.780 kb on - strand, within MPMX19_00676at 698.780 kb on - strand, within MPMX19_00676at 699.136 kb on + strand, within MPMX19_00676at 699.136 kb on + strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.304 kb on + strand, within MPMX19_00676at 699.304 kb on + strand, within MPMX19_00676at 699.304 kb on + strand, within MPMX19_00676at 699.305 kb on - strand, within MPMX19_00676at 699.305 kb on - strand, within MPMX19_00676at 699.525 kb on + strandat 699.525 kb on + strandat 699.525 kb on + strandat 699.526 kb on - strandat 699.526 kb on - strandat 699.552 kb on + strandat 699.552 kb on + strandat 699.553 kb on - strandat 699.616 kb on + strandat 699.616 kb on + strandat 699.616 kb on + strandat 699.616 kb on + strandat 699.617 kb on - strandat 699.617 kb on - strandat 699.617 kb on - strandat 700.413 kb on - strandat 700.413 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 700.445 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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698,639 + MPMX19_00676 0.23 +0.3
698,639 + MPMX19_00676 0.23 +1.1
698,639 + MPMX19_00676 0.23 +1.1
698,639 + MPMX19_00676 0.23 +2.1
698,639 + MPMX19_00676 0.23 -0.7
698,639 + MPMX19_00676 0.23 -1.2
698,639 + MPMX19_00676 0.23 -0.0
698,639 + MPMX19_00676 0.23 +0.1
698,639 + MPMX19_00676 0.23 +0.3
698,639 + MPMX19_00676 0.23 +0.3
698,639 + MPMX19_00676 0.23 -1.1
698,640 - MPMX19_00676 0.24 -0.1
698,640 - MPMX19_00676 0.24 -0.0
698,640 - MPMX19_00676 0.24 -0.1
698,640 - MPMX19_00676 0.24 +0.2
698,640 - MPMX19_00676 0.24 +1.1
698,640 - MPMX19_00676 0.24 -1.2
698,640 - MPMX19_00676 0.24 -1.7
698,640 - MPMX19_00676 0.24 +0.1
698,640 - MPMX19_00676 0.24 -1.3
698,780 - MPMX19_00676 0.36 -0.5
698,780 - MPMX19_00676 0.36 +0.6
698,780 - MPMX19_00676 0.36 -2.2
699,136 + MPMX19_00676 0.67 -1.0
699,136 + MPMX19_00676 0.67 +1.1
699,137 - MPMX19_00676 0.67 -0.9
699,137 - MPMX19_00676 0.67 -0.1
699,137 - MPMX19_00676 0.67 +0.1
699,137 - MPMX19_00676 0.67 -1.4
699,304 + MPMX19_00676 0.82 -1.4
699,304 + MPMX19_00676 0.82 +0.7
699,304 + MPMX19_00676 0.82 -1.1
699,305 - MPMX19_00676 0.82 +1.1
699,305 - MPMX19_00676 0.82 -1.4
699,525 + -0.6
699,525 + -1.1
699,525 + -0.1
699,526 - +0.2
699,526 - -1.9
699,552 + -1.9
699,552 + -1.2
699,553 - +0.3
699,616 + +0.1
699,616 + +0.8
699,616 + +0.1
699,616 + +0.5
699,617 - -1.1
699,617 - +0.5
699,617 - +0.5
700,413 - -0.7
700,413 - +1.3
700,445 - +1.1
700,445 - +0.7
700,445 - -1.5
700,445 - -1.0
700,445 - -0.5
700,445 - +0.2
700,445 - -1.5
700,445 - -1.2
701,364 - -1.1
701,364 - +0.6
701,364 - -0.9
701,364 - -1.5
701,364 - -0.0
701,364 - -1.5
701,364 - -0.7
701,364 - -0.1

Or see this region's nucleotide sequence