Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00240 and MPMX19_00241 are separated by 16 nucleotides MPMX19_00241 and MPMX19_00242 are separated by 98 nucleotides MPMX19_00242 and MPMX19_00243 overlap by 4 nucleotides MPMX19_00243 and MPMX19_00244 overlap by 4 nucleotides MPMX19_00244 and MPMX19_00245 are separated by 76 nucleotides
MPMX19_00240: MPMX19_00240 - hypothetical protein, at 243,180 to 243,680
_00240
MPMX19_00241: MPMX19_00241 - hypothetical protein, at 243,697 to 243,954
_00241
MPMX19_00242: MPMX19_00242 - hypothetical protein, at 244,053 to 244,505
_00242
MPMX19_00243: MPMX19_00243 - ECF RNA polymerase sigma factor SigJ, at 244,502 to 245,407
_00243
MPMX19_00244: MPMX19_00244 - hypothetical protein, at 245,404 to 245,778
_00244
MPMX19_00245: MPMX19_00245 - hypothetical protein, at 245,855 to 246,589
_00245
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 243.776 kb on - strand, within MPMX19_00241 at 244.095 kb on + strand at 244.095 kb on + strand at 244.095 kb on + strand at 244.095 kb on + strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.096 kb on - strand at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.200 kb on + strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.201 kb on - strand, within MPMX19_00242 at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.472 kb on + strand at 244.473 kb on - strand at 244.473 kb on - strand at 244.679 kb on + strand, within MPMX19_00243 at 244.679 kb on + strand, within MPMX19_00243 at 244.679 kb on + strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.680 kb on - strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.748 kb on + strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.749 kb on - strand, within MPMX19_00243 at 244.751 kb on + strand, within MPMX19_00243 at 244.751 kb on + strand, within MPMX19_00243 at 244.751 kb on + strand, within MPMX19_00243 at 244.752 kb on - strand, within MPMX19_00243 at 244.752 kb on - strand, within MPMX19_00243 at 244.913 kb on + strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.405 kb on + strand at 245.405 kb on + strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.522 kb on + strand, within MPMX19_00244 at 245.522 kb on + strand, within MPMX19_00244 at 245.522 kb on + strand, within MPMX19_00244 at 245.523 kb on - strand, within MPMX19_00244 at 245.523 kb on - strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.808 kb on - strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.823 kb on - strand at 245.823 kb on - strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.881 kb on + strand at 245.882 kb on - strand at 245.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 243,776 - MPMX19_00241 0.31 -0.9 244,095 + -0.6 244,095 + -0.2 244,095 + +0.1 244,095 + +1.6 244,096 - +0.2 244,096 - -1.3 244,096 - -0.2 244,096 - -0.8 244,096 - +0.4 244,096 - +1.5 244,096 - +1.0 244,096 - -1.8 244,200 + MPMX19_00242 0.32 -1.0 244,200 + MPMX19_00242 0.32 -1.0 244,200 + MPMX19_00242 0.32 +0.1 244,200 + MPMX19_00242 0.32 -2.0 244,200 + MPMX19_00242 0.32 +0.0 244,200 + MPMX19_00242 0.32 -0.9 244,200 + MPMX19_00242 0.32 -0.7 244,200 + MPMX19_00242 0.32 -0.6 244,200 + MPMX19_00242 0.32 +3.0 244,200 + MPMX19_00242 0.32 +0.2 244,200 + MPMX19_00242 0.32 +0.0 244,200 + MPMX19_00242 0.32 +0.4 244,200 + MPMX19_00242 0.32 -1.6 244,200 + MPMX19_00242 0.32 -1.0 244,200 + MPMX19_00242 0.32 -0.2 244,200 + MPMX19_00242 0.32 -0.6 244,200 + MPMX19_00242 0.32 +1.2 244,200 + MPMX19_00242 0.32 -1.3 244,200 + MPMX19_00242 0.32 -0.6 244,200 + MPMX19_00242 0.32 -0.9 244,200 + MPMX19_00242 0.32 -0.8 244,200 + MPMX19_00242 0.32 -0.1 244,200 + MPMX19_00242 0.32 -0.6 244,200 + MPMX19_00242 0.32 -0.3 244,200 + MPMX19_00242 0.32 -0.6 244,201 - MPMX19_00242 0.33 +0.0 244,201 - MPMX19_00242 0.33 +0.3 244,201 - MPMX19_00242 0.33 +0.0 244,201 - MPMX19_00242 0.33 -1.3 244,201 - MPMX19_00242 0.33 +0.4 244,201 - MPMX19_00242 0.33 -0.3 244,201 - MPMX19_00242 0.33 +0.7 244,201 - MPMX19_00242 0.33 +0.0 244,201 - MPMX19_00242 0.33 -0.3 244,201 - MPMX19_00242 0.33 -0.3 244,201 - MPMX19_00242 0.33 -1.0 244,201 - MPMX19_00242 0.33 -0.3 244,201 - MPMX19_00242 0.33 +2.0 244,201 - MPMX19_00242 0.33 -1.6 244,201 - MPMX19_00242 0.33 -0.8 244,201 - MPMX19_00242 0.33 -0.3 244,201 - MPMX19_00242 0.33 -0.4 244,201 - MPMX19_00242 0.33 +0.3 244,201 - MPMX19_00242 0.33 -0.6 244,201 - MPMX19_00242 0.33 +0.8 244,472 + +1.0 244,472 + -1.2 244,472 + -2.7 244,472 + -0.5 244,472 + +0.4 244,472 + +0.0 244,472 + -0.3 244,473 - +1.6 244,473 - +0.4 244,679 + MPMX19_00243 0.20 +0.2 244,679 + MPMX19_00243 0.20 +1.0 244,679 + MPMX19_00243 0.20 -0.6 244,680 - MPMX19_00243 0.20 +1.0 244,680 - MPMX19_00243 0.20 -2.0 244,680 - MPMX19_00243 0.20 +0.0 244,680 - MPMX19_00243 0.20 -0.4 244,680 - MPMX19_00243 0.20 +1.0 244,748 + MPMX19_00243 0.27 -0.6 244,748 + MPMX19_00243 0.27 -1.0 244,748 + MPMX19_00243 0.27 +1.2 244,748 + MPMX19_00243 0.27 -1.3 244,748 + MPMX19_00243 0.27 -1.2 244,748 + MPMX19_00243 0.27 -0.9 244,748 + MPMX19_00243 0.27 -0.6 244,748 + MPMX19_00243 0.27 +1.0 244,748 + MPMX19_00243 0.27 +1.0 244,748 + MPMX19_00243 0.27 +1.3 244,749 - MPMX19_00243 0.27 -0.7 244,749 - MPMX19_00243 0.27 -1.6 244,749 - MPMX19_00243 0.27 +0.4 244,749 - MPMX19_00243 0.27 -0.7 244,749 - MPMX19_00243 0.27 -1.3 244,749 - MPMX19_00243 0.27 -0.3 244,749 - MPMX19_00243 0.27 +0.0 244,751 + MPMX19_00243 0.27 +1.7 244,751 + MPMX19_00243 0.27 -1.2 244,751 + MPMX19_00243 0.27 -0.5 244,752 - MPMX19_00243 0.28 -0.6 244,752 - MPMX19_00243 0.28 +0.3 244,913 + MPMX19_00243 0.45 -0.4 244,914 - MPMX19_00243 0.45 +1.3 244,914 - MPMX19_00243 0.45 +0.0 244,914 - MPMX19_00243 0.45 -1.3 245,084 + MPMX19_00243 0.64 -0.4 245,084 + MPMX19_00243 0.64 -0.6 245,084 + MPMX19_00243 0.64 +0.4 245,084 + MPMX19_00243 0.64 -0.7 245,084 + MPMX19_00243 0.64 +1.0 245,084 + MPMX19_00243 0.64 +0.0 245,084 + MPMX19_00243 0.64 -1.3 245,084 + MPMX19_00243 0.64 -1.0 245,085 - MPMX19_00243 0.64 -2.3 245,085 - MPMX19_00243 0.64 +1.0 245,085 - MPMX19_00243 0.64 -1.0 245,085 - MPMX19_00243 0.64 +1.5 245,085 - MPMX19_00243 0.64 -1.0 245,085 - MPMX19_00243 0.64 -1.0 245,085 - MPMX19_00243 0.64 -2.5 245,085 - MPMX19_00243 0.64 +0.1 245,085 - MPMX19_00243 0.64 +0.7 245,360 + +0.0 245,360 + -1.6 245,360 + -1.0 245,360 + -0.9 245,360 + -1.0 245,360 + -0.3 245,360 + +0.4 245,360 + -0.7 245,360 + -0.8 245,361 - -1.0 245,361 - -1.2 245,361 - -0.3 245,361 - +0.6 245,361 - +0.4 245,361 - +1.0 245,361 - +1.3 245,405 + +0.2 245,405 + +1.0 245,406 - -0.8 245,406 - +0.3 245,406 - -0.2 245,406 - -0.3 245,522 + MPMX19_00244 0.31 +1.7 245,522 + MPMX19_00244 0.31 +0.0 245,522 + MPMX19_00244 0.31 +1.0 245,523 - MPMX19_00244 0.32 -2.5 245,523 - MPMX19_00244 0.32 -0.1 245,738 + MPMX19_00244 0.89 -0.7 245,738 + MPMX19_00244 0.89 -0.3 245,738 + MPMX19_00244 0.89 +0.4 245,739 - MPMX19_00244 0.89 -1.5 245,739 - MPMX19_00244 0.89 -0.7 245,739 - MPMX19_00244 0.89 -2.2 245,739 - MPMX19_00244 0.89 -2.6 245,739 - MPMX19_00244 0.89 -0.7 245,808 - -2.2 245,822 + -0.6 245,822 + -2.3 245,822 + -2.2 245,822 + -0.2 245,822 + +0.5 245,822 + -0.7 245,822 + -0.3 245,823 - -0.2 245,823 - -0.4 245,845 + +0.6 245,845 + -1.3 245,845 + -0.6 245,845 + +0.6 245,845 + -1.6 245,845 + +0.3 245,845 + -1.0 245,845 + -2.0 245,845 + +0.0 245,845 + +0.2 245,846 - -1.1 245,846 - -0.7 245,846 - +0.0 245,846 - -2.0 245,846 - +0.4 245,846 - -0.2 245,846 - -1.0 245,846 - +0.2 245,856 + -0.7 245,856 + -1.0 245,856 + +0.3 245,856 + +1.0 245,856 + -1.6 245,856 + -0.6 245,856 + +0.2 245,856 + -1.6 245,856 + -1.0 245,856 + -0.7 245,857 - -1.8 245,857 - +0.4 245,857 - +0.4 245,857 - -0.4 245,857 - +1.4 245,857 - +0.7 245,857 - -1.0 245,857 - +0.2 245,857 - +0.0 245,881 + -1.8 245,882 - -0.3 245,882 - -1.0
Or see this region's nucleotide sequence