Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00183

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00181 and MPMX19_00182 are separated by 74 nucleotidesMPMX19_00182 and MPMX19_00183 overlap by 1 nucleotidesMPMX19_00183 and MPMX19_00184 are separated by 252 nucleotides MPMX19_00181: MPMX19_00181 - hypothetical protein, at 191,224 to 191,490 _00181 MPMX19_00182: MPMX19_00182 - hypothetical protein, at 191,565 to 192,326 _00182 MPMX19_00183: MPMX19_00183 - hypothetical protein, at 192,326 to 192,571 _00183 MPMX19_00184: MPMX19_00184 - hypothetical protein, at 192,824 to 193,495 _00184 Position (kb) 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1at 191.631 kb on + strandat 191.632 kb on - strandat 191.674 kb on - strand, within MPMX19_00182at 191.714 kb on - strand, within MPMX19_00182at 191.714 kb on - strand, within MPMX19_00182at 191.770 kb on + strand, within MPMX19_00182at 191.840 kb on + strand, within MPMX19_00182at 191.840 kb on + strand, within MPMX19_00182at 192.600 kb on + strandat 192.600 kb on + strandat 192.600 kb on + strandat 192.600 kb on + strandat 192.600 kb on + strandat 192.600 kb on + strandat 192.601 kb on - strandat 192.601 kb on - strandat 192.601 kb on - strandat 192.601 kb on - strandat 192.601 kb on - strandat 192.676 kb on + strandat 192.723 kb on + strandat 192.724 kb on - strandat 192.724 kb on - strandat 192.786 kb on + strandat 192.787 kb on - strandat 192.804 kb on + strandat 192.881 kb on + strandat 192.990 kb on + strand, within MPMX19_00184at 192.991 kb on - strand, within MPMX19_00184at 193.052 kb on - strand, within MPMX19_00184at 193.068 kb on - strand, within MPMX19_00184at 193.084 kb on - strand, within MPMX19_00184at 193.084 kb on - strand, within MPMX19_00184at 193.172 kb on + strand, within MPMX19_00184at 193.173 kb on - strand, within MPMX19_00184at 193.176 kb on + strand, within MPMX19_00184at 193.242 kb on + strand, within MPMX19_00184at 193.242 kb on + strand, within MPMX19_00184at 193.243 kb on - strand, within MPMX19_00184at 193.243 kb on - strand, within MPMX19_00184at 193.243 kb on - strand, within MPMX19_00184at 193.289 kb on - strand, within MPMX19_00184at 193.309 kb on - strand, within MPMX19_00184at 193.361 kb on + strand, within MPMX19_00184at 193.362 kb on - strand, within MPMX19_00184at 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.436 kb on + strandat 193.437 kb on - strandat 193.437 kb on - strandat 193.437 kb on - strandat 193.437 kb on - strandat 193.445 kb on + strandat 193.445 kb on + strandat 193.445 kb on + strandat 193.445 kb on + strandat 193.446 kb on - strandat 193.446 kb on - strandat 193.446 kb on - strandat 193.446 kb on - strandat 193.446 kb on - strandat 193.458 kb on - strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.553 kb on + strandat 193.553 kb on + strandat 193.554 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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191,631 + -0.6
191,632 - -0.3
191,674 - MPMX19_00182 0.14 +1.4
191,714 - MPMX19_00182 0.20 -1.2
191,714 - MPMX19_00182 0.20 -1.0
191,770 + MPMX19_00182 0.27 +0.1
191,840 + MPMX19_00182 0.36 -0.0
191,840 + MPMX19_00182 0.36 -0.0
192,600 + -0.6
192,600 + +1.0
192,600 + -0.5
192,600 + +0.4
192,600 + -0.4
192,600 + -0.9
192,601 - -1.0
192,601 - -1.4
192,601 - +0.7
192,601 - -1.0
192,601 - -0.7
192,676 + -0.6
192,723 + +0.5
192,724 - -1.5
192,724 - -0.4
192,786 + +1.6
192,787 - +0.2
192,804 + -1.5
192,881 + -0.6
192,990 + MPMX19_00184 0.25 -1.4
192,991 - MPMX19_00184 0.25 -0.0
193,052 - MPMX19_00184 0.34 -1.4
193,068 - MPMX19_00184 0.36 -1.3
193,084 - MPMX19_00184 0.39 -0.7
193,084 - MPMX19_00184 0.39 -1.2
193,172 + MPMX19_00184 0.52 -1.6
193,173 - MPMX19_00184 0.52 -1.3
193,176 + MPMX19_00184 0.52 -0.0
193,242 + MPMX19_00184 0.62 -0.8
193,242 + MPMX19_00184 0.62 +0.3
193,243 - MPMX19_00184 0.62 -0.2
193,243 - MPMX19_00184 0.62 -1.5
193,243 - MPMX19_00184 0.62 -1.0
193,289 - MPMX19_00184 0.69 -0.8
193,309 - MPMX19_00184 0.72 +0.2
193,361 + MPMX19_00184 0.80 -1.5
193,362 - MPMX19_00184 0.80 -3.0
193,436 + -0.0
193,436 + -2.0
193,436 + +0.2
193,436 + -1.9
193,436 + -0.0
193,436 + -2.3
193,436 + -0.6
193,436 + -0.3
193,437 - -0.2
193,437 - -0.2
193,437 - -1.6
193,437 - -0.8
193,445 + -1.7
193,445 + -2.0
193,445 + -0.4
193,445 + -1.4
193,446 - -0.3
193,446 - -1.0
193,446 - -0.0
193,446 - -0.5
193,446 - -0.0
193,458 - -0.0
193,515 + -1.0
193,515 + +1.4
193,515 + -0.9
193,516 - -2.8
193,516 - +1.6
193,516 - +0.4
193,516 - -1.6
193,553 + -1.0
193,553 + -1.7
193,554 - -2.0

Or see this region's nucleotide sequence