Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00009 and MPMX19_00010 are separated by 242 nucleotides MPMX19_00010 and MPMX19_00011 overlap by 4 nucleotides MPMX19_00011 and MPMX19_00012 are separated by 170 nucleotides
MPMX19_00009: MPMX19_00009 - hypothetical protein, at 9,943 to 10,536
_00009
MPMX19_00010: MPMX19_00010 - Transcriptional regulatory protein OmpR, at 10,779 to 11,522
_00010
MPMX19_00011: MPMX19_00011 - Adaptive-response sensory-kinase SasA, at 11,519 to 13,003
_00011
MPMX19_00012: MPMX19_00012 - Biosynthetic peptidoglycan transglycosylase, at 13,174 to 15,621
_00012
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 10.568 kb on + strand at 10.568 kb on + strand at 10.568 kb on + strand at 10.568 kb on + strand at 10.568 kb on + strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.569 kb on - strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.590 kb on + strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.591 kb on - strand at 10.693 kb on - strand at 10.702 kb on + strand at 10.702 kb on + strand at 10.702 kb on + strand at 10.702 kb on + strand at 10.702 kb on + strand at 10.703 kb on - strand at 10.703 kb on - strand at 10.731 kb on + strand at 10.731 kb on + strand at 10.731 kb on + strand at 10.731 kb on + strand at 10.731 kb on + strand at 10.732 kb on - strand at 10.732 kb on - strand at 10.732 kb on - strand at 10.732 kb on - strand at 11.088 kb on + strand, within MPMX19_00010 at 11.088 kb on + strand, within MPMX19_00010 at 11.088 kb on + strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.089 kb on - strand, within MPMX19_00010 at 11.286 kb on + strand, within MPMX19_00010 at 11.286 kb on + strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.287 kb on - strand, within MPMX19_00010 at 11.478 kb on + strand at 11.478 kb on + strand at 11.478 kb on + strand at 11.479 kb on - strand at 11.479 kb on - strand at 11.696 kb on + strand, within MPMX19_00011 at 11.696 kb on + strand, within MPMX19_00011 at 11.697 kb on - strand, within MPMX19_00011 at 11.888 kb on + strand, within MPMX19_00011 at 11.888 kb on + strand, within MPMX19_00011 at 11.889 kb on - strand, within MPMX19_00011 at 11.889 kb on - strand, within MPMX19_00011 at 11.889 kb on - strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.629 kb on + strand, within MPMX19_00011 at 12.630 kb on - strand, within MPMX19_00011 at 12.630 kb on - strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.646 kb on + strand, within MPMX19_00011 at 12.647 kb on - strand, within MPMX19_00011 at 12.647 kb on - strand, within MPMX19_00011 at 12.647 kb on - strand, within MPMX19_00011 at 12.716 kb on + strand, within MPMX19_00011 at 12.716 kb on + strand, within MPMX19_00011 at 12.716 kb on + strand, within MPMX19_00011 at 12.716 kb on + strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.717 kb on - strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.851 kb on + strand, within MPMX19_00011 at 12.852 kb on - strand, within MPMX19_00011 at 12.852 kb on - strand, within MPMX19_00011 at 12.852 kb on - strand, within MPMX19_00011 at 13.026 kb on + strand at 13.026 kb on + strand at 13.027 kb on - strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.060 kb on + strand at 13.061 kb on - strand at 13.061 kb on - strand at 13.061 kb on - strand at 13.061 kb on - strand at 13.061 kb on - strand at 13.105 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.106 kb on + strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.107 kb on - strand at 13.234 kb on + strand at 13.234 kb on + strand at 13.235 kb on - strand at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.423 kb on + strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.424 kb on - strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.458 kb on + strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.459 kb on - strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.912 kb on + strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.913 kb on - strand, within MPMX19_00012 at 13.957 kb on + strand, within MPMX19_00012 at 13.957 kb on + strand, within MPMX19_00012 at 13.957 kb on + strand, within MPMX19_00012 at 13.957 kb on + strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012 at 13.958 kb on - strand, within MPMX19_00012
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 10,568 + +0.1 10,568 + -0.2 10,568 + -0.6 10,568 + -1.0 10,568 + +1.4 10,569 - -0.6 10,569 - -1.5 10,569 - +0.5 10,569 - +1.3 10,569 - +2.5 10,569 - -0.1 10,590 + -0.9 10,590 + -0.9 10,590 + -0.1 10,590 + +1.8 10,590 + -0.3 10,590 + -0.1 10,590 + -1.6 10,590 + -1.4 10,590 + -0.6 10,590 + -0.4 10,590 + -1.6 10,591 - +0.8 10,591 - -0.1 10,591 - -0.6 10,591 - +2.5 10,591 - +0.2 10,591 - +0.5 10,591 - +0.9 10,591 - -0.1 10,591 - +0.8 10,591 - -1.1 10,591 - +0.8 10,591 - +0.9 10,591 - +0.4 10,591 - +2.3 10,591 - +1.1 10,591 - +2.2 10,693 - +0.2 10,702 + -1.1 10,702 + -0.1 10,702 + -2.4 10,702 + +0.6 10,702 + -1.1 10,703 - -0.1 10,703 - -0.8 10,731 + +0.9 10,731 + +0.7 10,731 + -0.1 10,731 + -1.4 10,731 + -1.1 10,732 - -0.9 10,732 - +0.9 10,732 - +1.5 10,732 - +0.7 11,088 + MPMX19_00010 0.42 -0.8 11,088 + MPMX19_00010 0.42 +0.5 11,088 + MPMX19_00010 0.42 -0.2 11,089 - MPMX19_00010 0.42 +0.9 11,089 - MPMX19_00010 0.42 -0.1 11,089 - MPMX19_00010 0.42 -1.1 11,089 - MPMX19_00010 0.42 -2.1 11,089 - MPMX19_00010 0.42 -0.5 11,089 - MPMX19_00010 0.42 -0.1 11,286 + MPMX19_00010 0.68 +0.9 11,286 + MPMX19_00010 0.68 +0.4 11,287 - MPMX19_00010 0.68 +1.5 11,287 - MPMX19_00010 0.68 -0.3 11,287 - MPMX19_00010 0.68 +0.8 11,287 - MPMX19_00010 0.68 -1.0 11,287 - MPMX19_00010 0.68 -1.1 11,287 - MPMX19_00010 0.68 -0.4 11,287 - MPMX19_00010 0.68 +0.4 11,478 + -1.3 11,478 + +0.5 11,478 + -0.4 11,479 - +0.4 11,479 - +1.3 11,696 + MPMX19_00011 0.12 +0.8 11,696 + MPMX19_00011 0.12 -1.1 11,697 - MPMX19_00011 0.12 +1.5 11,888 + MPMX19_00011 0.25 -0.5 11,888 + MPMX19_00011 0.25 -1.1 11,889 - MPMX19_00011 0.25 -0.5 11,889 - MPMX19_00011 0.25 -0.1 11,889 - MPMX19_00011 0.25 +0.5 12,629 + MPMX19_00011 0.75 +0.9 12,629 + MPMX19_00011 0.75 +0.6 12,629 + MPMX19_00011 0.75 -0.9 12,629 + MPMX19_00011 0.75 +0.9 12,629 + MPMX19_00011 0.75 +1.1 12,629 + MPMX19_00011 0.75 -0.1 12,630 - MPMX19_00011 0.75 +1.4 12,630 - MPMX19_00011 0.75 -0.1 12,646 + MPMX19_00011 0.76 +1.5 12,646 + MPMX19_00011 0.76 -0.1 12,646 + MPMX19_00011 0.76 +0.1 12,646 + MPMX19_00011 0.76 +1.5 12,646 + MPMX19_00011 0.76 -0.1 12,647 - MPMX19_00011 0.76 -0.1 12,647 - MPMX19_00011 0.76 +0.2 12,647 - MPMX19_00011 0.76 +1.4 12,716 + MPMX19_00011 0.81 +0.5 12,716 + MPMX19_00011 0.81 +0.2 12,716 + MPMX19_00011 0.81 +0.9 12,716 + MPMX19_00011 0.81 -1.2 12,717 - MPMX19_00011 0.81 +1.7 12,717 - MPMX19_00011 0.81 -0.2 12,717 - MPMX19_00011 0.81 +0.9 12,717 - MPMX19_00011 0.81 +0.2 12,717 - MPMX19_00011 0.81 -0.2 12,717 - MPMX19_00011 0.81 -0.1 12,851 + MPMX19_00011 0.90 -0.4 12,851 + MPMX19_00011 0.90 +0.4 12,851 + MPMX19_00011 0.90 -0.3 12,851 + MPMX19_00011 0.90 +0.9 12,851 + MPMX19_00011 0.90 +1.1 12,852 - MPMX19_00011 0.90 -0.4 12,852 - MPMX19_00011 0.90 +0.9 12,852 - MPMX19_00011 0.90 -1.9 13,026 + -0.3 13,026 + +0.5 13,027 - +0.6 13,060 + -0.3 13,060 + -1.1 13,060 + -0.8 13,060 + -0.6 13,060 + +0.8 13,060 + -1.8 13,060 + +1.3 13,060 + +0.9 13,061 - +0.9 13,061 - -0.1 13,061 - -0.4 13,061 - -1.6 13,061 - +0.9 13,105 + -0.7 13,106 + -1.1 13,106 + +0.2 13,106 + +0.9 13,106 + -0.6 13,106 + -0.1 13,106 + -1.6 13,106 + -0.4 13,106 + +0.9 13,106 + +0.4 13,106 + +1.2 13,106 + -0.2 13,106 + -0.3 13,106 + -0.4 13,107 - +0.9 13,107 - -3.1 13,107 - -0.4 13,107 - -0.3 13,107 - -0.1 13,107 - -1.1 13,234 + -0.1 13,234 + -0.1 13,235 - -1.6 13,423 + MPMX19_00012 0.10 +0.4 13,423 + MPMX19_00012 0.10 +0.3 13,423 + MPMX19_00012 0.10 -1.1 13,423 + MPMX19_00012 0.10 -0.1 13,423 + MPMX19_00012 0.10 +0.2 13,423 + MPMX19_00012 0.10 +2.3 13,423 + MPMX19_00012 0.10 +0.6 13,423 + MPMX19_00012 0.10 -0.1 13,423 + MPMX19_00012 0.10 -0.1 13,423 + MPMX19_00012 0.10 +0.6 13,423 + MPMX19_00012 0.10 -0.3 13,424 - MPMX19_00012 0.10 +0.7 13,424 - MPMX19_00012 0.10 +1.5 13,424 - MPMX19_00012 0.10 +1.1 13,424 - MPMX19_00012 0.10 +0.4 13,424 - MPMX19_00012 0.10 +1.9 13,424 - MPMX19_00012 0.10 -1.4 13,424 - MPMX19_00012 0.10 +1.7 13,424 - MPMX19_00012 0.10 +0.2 13,424 - MPMX19_00012 0.10 +0.6 13,458 + MPMX19_00012 0.12 -0.4 13,458 + MPMX19_00012 0.12 -0.6 13,458 + MPMX19_00012 0.12 +0.7 13,458 + MPMX19_00012 0.12 +1.9 13,458 + MPMX19_00012 0.12 +0.5 13,458 + MPMX19_00012 0.12 +0.2 13,458 + MPMX19_00012 0.12 -0.3 13,458 + MPMX19_00012 0.12 -0.1 13,458 + MPMX19_00012 0.12 +0.5 13,458 + MPMX19_00012 0.12 +0.1 13,458 + MPMX19_00012 0.12 +0.9 13,458 + MPMX19_00012 0.12 +0.2 13,458 + MPMX19_00012 0.12 -1.6 13,458 + MPMX19_00012 0.12 +1.7 13,458 + MPMX19_00012 0.12 -3.0 13,458 + MPMX19_00012 0.12 +0.2 13,459 - MPMX19_00012 0.12 -2.6 13,459 - MPMX19_00012 0.12 -0.2 13,459 - MPMX19_00012 0.12 -0.4 13,459 - MPMX19_00012 0.12 +0.4 13,459 - MPMX19_00012 0.12 -0.1 13,459 - MPMX19_00012 0.12 +0.1 13,459 - MPMX19_00012 0.12 +1.4 13,459 - MPMX19_00012 0.12 -0.4 13,459 - MPMX19_00012 0.12 -1.5 13,459 - MPMX19_00012 0.12 +0.6 13,459 - MPMX19_00012 0.12 +1.9 13,459 - MPMX19_00012 0.12 +0.2 13,459 - MPMX19_00012 0.12 +0.9 13,459 - MPMX19_00012 0.12 +2.8 13,459 - MPMX19_00012 0.12 +0.4 13,912 + MPMX19_00012 0.30 -0.6 13,912 + MPMX19_00012 0.30 +0.7 13,912 + MPMX19_00012 0.30 +0.4 13,912 + MPMX19_00012 0.30 -1.3 13,912 + MPMX19_00012 0.30 -1.4 13,913 - MPMX19_00012 0.30 -0.1 13,913 - MPMX19_00012 0.30 -0.3 13,913 - MPMX19_00012 0.30 -0.6 13,913 - MPMX19_00012 0.30 -0.1 13,913 - MPMX19_00012 0.30 -1.6 13,913 - MPMX19_00012 0.30 -0.9 13,957 + MPMX19_00012 0.32 +0.9 13,957 + MPMX19_00012 0.32 -0.6 13,957 + MPMX19_00012 0.32 -0.1 13,957 + MPMX19_00012 0.32 -0.6 13,958 - MPMX19_00012 0.32 -1.0 13,958 - MPMX19_00012 0.32 +1.1 13,958 - MPMX19_00012 0.32 +0.4 13,958 - MPMX19_00012 0.32 +1.2 13,958 - MPMX19_00012 0.32 -1.2
Or see this region's nucleotide sequence