Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06890

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06889 and MPMX19_06890 overlap by 1 nucleotidesMPMX19_06890 and MPMX19_06891 are separated by 86 nucleotidesMPMX19_06891 and MPMX19_06892 overlap by 4 nucleotides MPMX19_06889: MPMX19_06889 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 161,972 to 164,272 _06889 MPMX19_06890: MPMX19_06890 - hypothetical protein, at 164,272 to 165,309 _06890 MPMX19_06891: MPMX19_06891 - Aliphatic sulfonates import ATP-binding protein SsuB, at 165,396 to 166,121 _06891 MPMX19_06892: MPMX19_06892 - Putative aliphatic sulfonates transport permease protein SsuC, at 166,118 to 166,993 _06892 Position (kb) 164 165 166Strain fitness (log2 ratio) -2 -1 0 1 2at 163.443 kb on + strand, within MPMX19_06889at 163.443 kb on + strand, within MPMX19_06889at 163.444 kb on - strand, within MPMX19_06889at 163.444 kb on - strand, within MPMX19_06889at 163.845 kb on + strand, within MPMX19_06889at 163.866 kb on + strand, within MPMX19_06889at 163.941 kb on + strand, within MPMX19_06889at 163.941 kb on + strand, within MPMX19_06889at 163.941 kb on + strand, within MPMX19_06889at 164.230 kb on - strandat 164.418 kb on - strand, within MPMX19_06890at 164.418 kb on - strand, within MPMX19_06890at 164.418 kb on - strand, within MPMX19_06890at 164.418 kb on - strand, within MPMX19_06890at 164.418 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.639 kb on + strand, within MPMX19_06890at 164.639 kb on + strand, within MPMX19_06890at 164.639 kb on + strand, within MPMX19_06890at 164.639 kb on + strand, within MPMX19_06890at 164.735 kb on + strand, within MPMX19_06890at 164.904 kb on - strand, within MPMX19_06890at 164.904 kb on - strand, within MPMX19_06890at 164.904 kb on - strand, within MPMX19_06890at 164.904 kb on - strand, within MPMX19_06890at 165.285 kb on + strandat 166.043 kb on - strand, within MPMX19_06891at 166.134 kb on + strandat 166.134 kb on + strandat 166.134 kb on + strandat 166.134 kb on + strandat 166.134 kb on + strandat 166.135 kb on - strandat 166.135 kb on - strandat 166.210 kb on - strand, within MPMX19_06892at 166.210 kb on - strand, within MPMX19_06892at 166.210 kb on - strand, within MPMX19_06892at 166.210 kb on - strand, within MPMX19_06892at 166.210 kb on - strand, within MPMX19_06892at 166.210 kb on - strand, within MPMX19_06892at 166.210 kb on - strand, within MPMX19_06892

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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163,443 + MPMX19_06889 0.64 +0.7
163,443 + MPMX19_06889 0.64 +1.1
163,444 - MPMX19_06889 0.64 +0.4
163,444 - MPMX19_06889 0.64 -0.1
163,845 + MPMX19_06889 0.81 -0.9
163,866 + MPMX19_06889 0.82 +0.6
163,941 + MPMX19_06889 0.86 -2.4
163,941 + MPMX19_06889 0.86 +0.8
163,941 + MPMX19_06889 0.86 -0.4
164,230 - +0.6
164,418 - MPMX19_06890 0.14 +1.1
164,418 - MPMX19_06890 0.14 +1.1
164,418 - MPMX19_06890 0.14 +1.1
164,418 - MPMX19_06890 0.14 +0.9
164,418 - MPMX19_06890 0.14 -0.2
164,577 - MPMX19_06890 0.29 -0.9
164,577 - MPMX19_06890 0.29 +0.5
164,577 - MPMX19_06890 0.29 +0.3
164,577 - MPMX19_06890 0.29 +0.1
164,577 - MPMX19_06890 0.29 +1.4
164,639 + MPMX19_06890 0.35 +0.1
164,639 + MPMX19_06890 0.35 -1.0
164,639 + MPMX19_06890 0.35 +1.4
164,639 + MPMX19_06890 0.35 -0.8
164,735 + MPMX19_06890 0.45 -1.9
164,904 - MPMX19_06890 0.61 -2.1
164,904 - MPMX19_06890 0.61 +0.1
164,904 - MPMX19_06890 0.61 +0.8
164,904 - MPMX19_06890 0.61 -0.3
165,285 + +0.4
166,043 - MPMX19_06891 0.89 +0.2
166,134 + -0.7
166,134 + -0.4
166,134 + +0.8
166,134 + -2.1
166,134 + -1.5
166,135 - +1.1
166,135 - -0.5
166,210 - MPMX19_06892 0.11 -0.7
166,210 - MPMX19_06892 0.11 -1.0
166,210 - MPMX19_06892 0.11 +1.8
166,210 - MPMX19_06892 0.11 +1.5
166,210 - MPMX19_06892 0.11 +0.1
166,210 - MPMX19_06892 0.11 -0.9
166,210 - MPMX19_06892 0.11 -0.4

Or see this region's nucleotide sequence