Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06455 and MPMX19_06456 are separated by 57 nucleotides MPMX19_06456 and MPMX19_06457 are separated by 432 nucleotides MPMX19_06457 and MPMX19_06458 are separated by 16 nucleotides
MPMX19_06455: MPMX19_06455 - Tyrosine recombinase XerC, at 230,586 to 231,743
_06455
MPMX19_06456: MPMX19_06456 - hypothetical protein, at 231,801 to 232,160
_06456
MPMX19_06457: MPMX19_06457 - hypothetical protein, at 232,593 to 234,149
_06457
MPMX19_06458: MPMX19_06458 - hypothetical protein, at 234,166 to 238,191
_06458
Position (kb) 232
233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.763 kb on + strand at 231.802 kb on + strand at 231.802 kb on + strand at 231.803 kb on - strand at 231.803 kb on - strand at 231.803 kb on - strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.815 kb on - strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.833 kb on - strand at 231.833 kb on - strand at 231.833 kb on - strand at 231.898 kb on + strand, within MPMX19_06456 at 231.898 kb on + strand, within MPMX19_06456 at 231.899 kb on - strand, within MPMX19_06456 at 232.170 kb on + strand at 232.171 kb on - strand at 232.209 kb on + strand at 232.209 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.338 kb on - strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.426 kb on + strand at 232.426 kb on + strand at 232.426 kb on + strand at 232.427 kb on - strand at 232.427 kb on - strand at 232.427 kb on - strand at 232.465 kb on + strand at 232.487 kb on + strand at 232.487 kb on + strand at 232.506 kb on + strand at 232.506 kb on + strand at 232.506 kb on + strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.508 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.604 kb on - strand at 232.604 kb on - strand at 232.640 kb on + strand at 232.640 kb on + strand at 232.640 kb on + strand at 232.641 kb on - strand at 232.641 kb on - strand at 232.641 kb on - strand at 232.652 kb on + strand at 232.653 kb on - strand at 232.653 kb on - strand at 232.653 kb on - strand at 232.686 kb on + strand at 232.686 kb on + strand at 232.687 kb on - strand at 232.845 kb on + strand, within MPMX19_06457 at 232.846 kb on - strand, within MPMX19_06457 at 232.846 kb on - strand, within MPMX19_06457 at 233.209 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.231 kb on + strand, within MPMX19_06457 at 233.232 kb on - strand, within MPMX19_06457 at 233.232 kb on - strand, within MPMX19_06457 at 233.232 kb on - strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.313 kb on + strand, within MPMX19_06457 at 233.314 kb on - strand, within MPMX19_06457 at 233.314 kb on - strand, within MPMX19_06457 at 233.314 kb on - strand, within MPMX19_06457 at 233.314 kb on - strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.319 kb on + strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.320 kb on - strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.360 kb on + strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.361 kb on - strand, within MPMX19_06457 at 233.575 kb on - strand, within MPMX19_06457 at 233.575 kb on - strand, within MPMX19_06457 at 233.853 kb on + strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 233.854 kb on - strand, within MPMX19_06457 at 234.008 kb on + strand at 234.008 kb on + strand at 234.008 kb on + strand at 234.008 kb on + strand at 234.009 kb on - strand at 234.009 kb on - strand at 234.093 kb on - strand at 234.188 kb on + strand at 234.406 kb on + strand at 234.406 kb on + strand at 234.406 kb on + strand at 234.406 kb on + strand at 234.406 kb on + strand at 234.407 kb on - strand at 234.407 kb on - strand at 234.407 kb on - strand at 234.407 kb on - strand at 234.496 kb on + strand at 234.497 kb on - strand at 234.497 kb on - strand at 234.581 kb on - strand, within MPMX19_06458 at 234.581 kb on - strand, within MPMX19_06458 at 234.664 kb on + strand, within MPMX19_06458 at 234.664 kb on + strand, within MPMX19_06458 at 234.664 kb on + strand, within MPMX19_06458 at 234.664 kb on + strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.665 kb on - strand, within MPMX19_06458 at 234.941 kb on + strand, within MPMX19_06458 at 234.941 kb on + strand, within MPMX19_06458 at 235.094 kb on + strand, within MPMX19_06458 at 235.095 kb on - strand, within MPMX19_06458 at 235.095 kb on - strand, within MPMX19_06458 at 235.095 kb on - strand, within MPMX19_06458 at 235.119 kb on + strand, within MPMX19_06458 at 235.119 kb on + strand, within MPMX19_06458 at 235.120 kb on - strand, within MPMX19_06458 at 235.120 kb on - strand, within MPMX19_06458 at 235.120 kb on - strand, within MPMX19_06458 at 235.120 kb on - strand, within MPMX19_06458
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 231,669 + -0.4 231,669 + -0.8 231,669 + -0.4 231,669 + -0.3 231,669 + -0.3 231,670 - -0.7 231,670 - -2.2 231,670 - -0.8 231,670 - +1.0 231,670 - -0.2 231,670 - +0.4 231,670 - +0.7 231,670 - -0.2 231,670 - -0.8 231,763 + -2.3 231,802 + +0.6 231,802 + -0.2 231,803 - +0.4 231,803 - -1.8 231,803 - -0.3 231,814 + -1.2 231,814 + +1.4 231,814 + -1.2 231,814 + +0.3 231,815 - +0.5 231,826 + -0.6 231,826 + -0.3 231,826 + +0.4 231,826 + -1.4 231,826 + -0.4 231,826 + +0.9 231,826 + -0.7 231,826 + -1.5 231,826 + -0.4 231,826 + +1.2 231,827 - -1.4 231,827 - +0.6 231,827 - -0.5 231,827 - -1.2 231,827 - -0.8 231,827 - +1.6 231,827 - +1.9 231,827 - -1.2 231,827 - -0.2 231,827 - -0.8 231,827 - +0.0 231,827 - +1.2 231,832 + -1.6 231,832 + -2.5 231,832 + -0.4 231,832 + -0.4 231,832 + +0.6 231,833 - +0.6 231,833 - -0.2 231,833 - +0.5 231,898 + MPMX19_06456 0.27 +1.9 231,898 + MPMX19_06456 0.27 +0.2 231,899 - MPMX19_06456 0.27 -0.3 232,170 + +1.2 232,171 - +0.7 232,209 + +0.4 232,209 + -2.3 232,288 + -0.5 232,288 + +0.4 232,338 - +0.6 232,387 + +0.7 232,387 + -0.8 232,387 + +0.8 232,387 + -1.4 232,387 + -1.2 232,387 + -1.4 232,387 + -1.2 232,387 + +0.7 232,388 - +0.6 232,388 - +0.7 232,388 - +0.6 232,388 - +0.7 232,388 - -0.6 232,388 - +1.6 232,388 - -1.3 232,388 - -0.2 232,388 - +0.3 232,388 - -0.6 232,388 - -2.0 232,426 + -1.7 232,426 + -0.9 232,426 + +0.6 232,427 - -0.6 232,427 - -1.6 232,427 - -1.1 232,465 + +0.7 232,487 + -0.1 232,487 + -0.5 232,506 + -0.5 232,506 + -0.7 232,506 + -0.6 232,507 - -0.8 232,507 - +0.5 232,507 - -0.8 232,507 - -1.4 232,507 - -1.7 232,507 - -0.2 232,507 - -0.0 232,507 - -0.4 232,507 - +2.0 232,508 + -1.8 232,598 + +0.5 232,598 + -0.2 232,598 + -1.8 232,604 - -0.6 232,604 - +0.6 232,640 + -1.8 232,640 + +0.2 232,640 + -0.6 232,641 - -1.0 232,641 - -0.4 232,641 - -0.4 232,652 + -1.4 232,653 - -0.4 232,653 - -0.1 232,653 - -1.2 232,686 + -0.7 232,686 + -1.6 232,687 - -1.1 232,845 + MPMX19_06457 0.16 -2.3 232,846 - MPMX19_06457 0.16 +0.4 232,846 - MPMX19_06457 0.16 +0.2 233,209 + MPMX19_06457 0.40 -1.4 233,231 + MPMX19_06457 0.41 -0.4 233,231 + MPMX19_06457 0.41 +0.2 233,231 + MPMX19_06457 0.41 -1.2 233,231 + MPMX19_06457 0.41 -0.4 233,231 + MPMX19_06457 0.41 -1.0 233,231 + MPMX19_06457 0.41 +0.4 233,231 + MPMX19_06457 0.41 -1.9 233,232 - MPMX19_06457 0.41 -2.1 233,232 - MPMX19_06457 0.41 -0.2 233,232 - MPMX19_06457 0.41 +0.7 233,313 + MPMX19_06457 0.46 -2.2 233,313 + MPMX19_06457 0.46 +0.6 233,313 + MPMX19_06457 0.46 +0.7 233,313 + MPMX19_06457 0.46 -1.2 233,313 + MPMX19_06457 0.46 +1.2 233,314 - MPMX19_06457 0.46 +0.5 233,314 - MPMX19_06457 0.46 -1.2 233,314 - MPMX19_06457 0.46 -2.2 233,314 - MPMX19_06457 0.46 -0.0 233,319 + MPMX19_06457 0.47 -0.6 233,319 + MPMX19_06457 0.47 +1.2 233,319 + MPMX19_06457 0.47 -0.4 233,319 + MPMX19_06457 0.47 -0.6 233,319 + MPMX19_06457 0.47 +0.2 233,319 + MPMX19_06457 0.47 +0.8 233,319 + MPMX19_06457 0.47 -1.6 233,319 + MPMX19_06457 0.47 -0.1 233,319 + MPMX19_06457 0.47 +0.2 233,319 + MPMX19_06457 0.47 -2.2 233,319 + MPMX19_06457 0.47 +0.4 233,319 + MPMX19_06457 0.47 -2.4 233,319 + MPMX19_06457 0.47 -0.3 233,319 + MPMX19_06457 0.47 +0.2 233,319 + MPMX19_06457 0.47 -0.5 233,319 + MPMX19_06457 0.47 -1.0 233,319 + MPMX19_06457 0.47 -0.8 233,319 + MPMX19_06457 0.47 +0.2 233,320 - MPMX19_06457 0.47 -1.1 233,320 - MPMX19_06457 0.47 -1.2 233,320 - MPMX19_06457 0.47 +0.2 233,320 - MPMX19_06457 0.47 -2.3 233,320 - MPMX19_06457 0.47 -1.2 233,320 - MPMX19_06457 0.47 -1.1 233,320 - MPMX19_06457 0.47 -1.4 233,320 - MPMX19_06457 0.47 +0.4 233,320 - MPMX19_06457 0.47 +0.2 233,320 - MPMX19_06457 0.47 +0.9 233,320 - MPMX19_06457 0.47 -0.6 233,320 - MPMX19_06457 0.47 -0.4 233,320 - MPMX19_06457 0.47 -1.2 233,360 + MPMX19_06457 0.49 -1.8 233,360 + MPMX19_06457 0.49 -2.0 233,360 + MPMX19_06457 0.49 -1.6 233,360 + MPMX19_06457 0.49 -1.2 233,360 + MPMX19_06457 0.49 -0.3 233,360 + MPMX19_06457 0.49 -0.8 233,360 + MPMX19_06457 0.49 -1.5 233,360 + MPMX19_06457 0.49 -1.8 233,360 + MPMX19_06457 0.49 +0.4 233,361 - MPMX19_06457 0.49 +0.5 233,361 - MPMX19_06457 0.49 -0.1 233,361 - MPMX19_06457 0.49 -0.8 233,361 - MPMX19_06457 0.49 -2.0 233,361 - MPMX19_06457 0.49 -2.4 233,361 - MPMX19_06457 0.49 -1.3 233,361 - MPMX19_06457 0.49 -0.8 233,361 - MPMX19_06457 0.49 -0.6 233,361 - MPMX19_06457 0.49 +0.2 233,361 - MPMX19_06457 0.49 -1.0 233,361 - MPMX19_06457 0.49 -0.6 233,361 - MPMX19_06457 0.49 -0.3 233,361 - MPMX19_06457 0.49 +0.4 233,361 - MPMX19_06457 0.49 +0.6 233,361 - MPMX19_06457 0.49 -0.6 233,361 - MPMX19_06457 0.49 -0.6 233,575 - MPMX19_06457 0.63 -0.4 233,575 - MPMX19_06457 0.63 +0.4 233,853 + MPMX19_06457 0.81 +1.2 233,854 - MPMX19_06457 0.81 -1.0 233,854 - MPMX19_06457 0.81 -1.0 233,854 - MPMX19_06457 0.81 +0.4 233,854 - MPMX19_06457 0.81 -1.8 233,854 - MPMX19_06457 0.81 -0.5 234,008 + -1.4 234,008 + -1.1 234,008 + +0.2 234,008 + -0.6 234,009 - -1.8 234,009 - -0.3 234,093 - +0.6 234,188 + -1.2 234,406 + -0.2 234,406 + +0.1 234,406 + -1.2 234,406 + -1.4 234,406 + -0.2 234,407 - -0.3 234,407 - -0.8 234,407 - -1.2 234,407 - -1.0 234,496 + -0.1 234,497 - -0.3 234,497 - -0.4 234,581 - MPMX19_06458 0.10 -1.8 234,581 - MPMX19_06458 0.10 -1.4 234,664 + MPMX19_06458 0.12 -0.4 234,664 + MPMX19_06458 0.12 -0.4 234,664 + MPMX19_06458 0.12 +0.2 234,664 + MPMX19_06458 0.12 +0.4 234,665 - MPMX19_06458 0.12 -0.6 234,665 - MPMX19_06458 0.12 +0.4 234,665 - MPMX19_06458 0.12 +1.2 234,665 - MPMX19_06458 0.12 -0.5 234,665 - MPMX19_06458 0.12 +0.8 234,941 + MPMX19_06458 0.19 -1.2 234,941 + MPMX19_06458 0.19 -2.2 235,094 + MPMX19_06458 0.23 -1.6 235,095 - MPMX19_06458 0.23 -0.4 235,095 - MPMX19_06458 0.23 +1.4 235,095 - MPMX19_06458 0.23 -1.2 235,119 + MPMX19_06458 0.24 +0.2 235,119 + MPMX19_06458 0.24 -0.0 235,120 - MPMX19_06458 0.24 -0.4 235,120 - MPMX19_06458 0.24 -1.7 235,120 - MPMX19_06458 0.24 -0.3 235,120 - MPMX19_06458 0.24 +0.8
Or see this region's nucleotide sequence