Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06029 and MPMX19_06030 are separated by 38 nucleotides MPMX19_06030 and MPMX19_06031 are separated by 214 nucleotides MPMX19_06031 and MPMX19_06032 are separated by 191 nucleotides
MPMX19_06029: MPMX19_06029 - Hydroxyacylglutathione hydrolase GloB, at 181,774 to 182,541
_06029
MPMX19_06030: MPMX19_06030 - putative GST-like protein YibF, at 182,580 to 183,185
_06030
MPMX19_06031: MPMX19_06031 - hypothetical protein, at 183,400 to 186,078
_06031
MPMX19_06032: MPMX19_06032 - Phosphate-binding protein PstS, at 186,270 to 187,346
_06032
Position (kb) 183
184
185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.613 kb on + strand at 182.613 kb on + strand at 182.613 kb on + strand at 182.614 kb on - strand at 182.614 kb on - strand at 182.614 kb on - strand at 182.614 kb on - strand at 182.614 kb on - strand at 182.794 kb on - strand, within MPMX19_06030 at 182.794 kb on - strand, within MPMX19_06030 at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.184 kb on - strand at 183.184 kb on - strand at 183.184 kb on - strand at 183.184 kb on - strand at 183.226 kb on + strand at 183.257 kb on + strand at 183.277 kb on + strand at 183.277 kb on + strand at 183.278 kb on - strand at 183.278 kb on - strand at 183.278 kb on - strand at 183.278 kb on - strand at 183.278 kb on - strand at 183.437 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.469 kb on - strand at 183.469 kb on - strand at 183.480 kb on + strand at 183.480 kb on + strand at 183.480 kb on + strand at 183.481 kb on - strand at 183.583 kb on + strand at 183.583 kb on + strand at 183.583 kb on + strand at 183.583 kb on + strand at 183.583 kb on + strand at 183.584 kb on - strand at 183.584 kb on - strand at 183.584 kb on - strand at 183.584 kb on - strand at 183.807 kb on + strand, within MPMX19_06031 at 183.807 kb on + strand, within MPMX19_06031 at 184.318 kb on + strand, within MPMX19_06031 at 184.318 kb on + strand, within MPMX19_06031 at 184.318 kb on + strand, within MPMX19_06031 at 184.319 kb on - strand, within MPMX19_06031 at 184.319 kb on - strand, within MPMX19_06031 at 184.319 kb on - strand, within MPMX19_06031 at 184.319 kb on - strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 185.014 kb on + strand, within MPMX19_06031 at 185.014 kb on + strand, within MPMX19_06031 at 185.014 kb on + strand, within MPMX19_06031 at 185.014 kb on + strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 186.139 kb on - strand at 186.139 kb on - strand at 186.170 kb on - strand at 186.198 kb on - strand at 186.198 kb on - strand at 186.254 kb on + strand at 186.265 kb on + strand at 186.265 kb on + strand at 186.408 kb on + strand, within MPMX19_06032 at 186.408 kb on + strand, within MPMX19_06032 at 186.408 kb on + strand, within MPMX19_06032 at 186.429 kb on + strand, within MPMX19_06032 at 186.429 kb on + strand, within MPMX19_06032 at 186.429 kb on + strand, within MPMX19_06032 at 186.429 kb on + strand, within MPMX19_06032 at 186.430 kb on - strand, within MPMX19_06032 at 186.459 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.762 kb on + strand, within MPMX19_06032 at 186.762 kb on + strand, within MPMX19_06032 at 186.763 kb on - strand, within MPMX19_06032 at 186.804 kb on + strand, within MPMX19_06032 at 186.804 kb on + strand, within MPMX19_06032 at 186.804 kb on + strand, within MPMX19_06032 at 186.805 kb on - strand, within MPMX19_06032 at 186.939 kb on + strand, within MPMX19_06032 at 186.954 kb on + strand, within MPMX19_06032 at 187.077 kb on + strand, within MPMX19_06032 at 187.077 kb on + strand, within MPMX19_06032 at 187.077 kb on + strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 182,405 + MPMX19_06029 0.82 +0.1 182,405 + MPMX19_06029 0.82 -1.5 182,405 + MPMX19_06029 0.82 +0.3 182,405 + MPMX19_06029 0.82 +1.0 182,405 + MPMX19_06029 0.82 +1.3 182,405 + MPMX19_06029 0.82 -1.1 182,405 + MPMX19_06029 0.82 -2.1 182,405 + MPMX19_06029 0.82 -0.5 182,405 + MPMX19_06029 0.82 +1.5 182,405 + MPMX19_06029 0.82 -0.3 182,405 + MPMX19_06029 0.82 -1.9 182,405 + MPMX19_06029 0.82 -0.1 182,405 + MPMX19_06029 0.82 -0.1 182,405 + MPMX19_06029 0.82 -0.5 182,405 + MPMX19_06029 0.82 +0.9 182,405 + MPMX19_06029 0.82 -0.7 182,406 - MPMX19_06029 0.82 -1.1 182,406 - MPMX19_06029 0.82 -0.5 182,406 - MPMX19_06029 0.82 -1.7 182,406 - MPMX19_06029 0.82 -0.5 182,406 - MPMX19_06029 0.82 -0.7 182,406 - MPMX19_06029 0.82 +0.1 182,406 - MPMX19_06029 0.82 -0.1 182,406 - MPMX19_06029 0.82 -0.5 182,406 - MPMX19_06029 0.82 -0.5 182,406 - MPMX19_06029 0.82 -0.3 182,406 - MPMX19_06029 0.82 +2.2 182,406 - MPMX19_06029 0.82 -1.1 182,406 - MPMX19_06029 0.82 -0.1 182,406 - MPMX19_06029 0.82 -0.1 182,579 + +0.5 182,579 + -0.1 182,579 + -0.7 182,579 + +0.7 182,579 + -1.7 182,579 + -0.7 182,579 + +0.1 182,579 + -0.7 182,580 - -1.8 182,580 - -0.7 182,580 - +0.3 182,580 - -1.3 182,580 - -0.3 182,580 - -0.7 182,613 + -0.7 182,613 + -1.7 182,613 + -0.8 182,614 - -1.1 182,614 - -0.4 182,614 - +0.1 182,614 - +0.1 182,614 - +0.3 182,794 - MPMX19_06030 0.35 -2.7 182,794 - MPMX19_06030 0.35 -0.7 183,183 + -0.5 183,183 + -1.1 183,183 + -2.1 183,183 + -0.9 183,183 + +0.5 183,183 + -0.4 183,183 + -0.1 183,184 - +0.4 183,184 - -1.1 183,184 - +0.6 183,184 - +0.2 183,226 + +0.9 183,257 + -0.5 183,277 + -1.0 183,277 + -0.8 183,278 - -1.5 183,278 - -0.5 183,278 - -1.5 183,278 - -1.1 183,278 - -0.1 183,437 + +0.9 183,468 + -1.1 183,468 + -1.5 183,468 + +1.5 183,468 + -1.1 183,468 + -1.1 183,468 + -2.5 183,468 + -1.1 183,469 - -0.7 183,469 - +0.1 183,480 + +0.5 183,480 + -2.8 183,480 + -2.8 183,481 - +1.2 183,583 + +0.9 183,583 + +0.5 183,583 + +0.3 183,583 + -0.5 183,583 + -0.7 183,584 - +0.5 183,584 - -0.5 183,584 - +0.3 183,584 - -0.1 183,807 + MPMX19_06031 0.15 -0.9 183,807 + MPMX19_06031 0.15 -1.5 184,318 + MPMX19_06031 0.34 -1.8 184,318 + MPMX19_06031 0.34 -1.2 184,318 + MPMX19_06031 0.34 -0.8 184,319 - MPMX19_06031 0.34 -0.1 184,319 - MPMX19_06031 0.34 -1.1 184,319 - MPMX19_06031 0.34 -0.1 184,319 - MPMX19_06031 0.34 -0.5 184,552 + MPMX19_06031 0.43 +0.1 184,552 + MPMX19_06031 0.43 -1.3 184,552 + MPMX19_06031 0.43 -0.5 184,552 + MPMX19_06031 0.43 -0.6 184,552 + MPMX19_06031 0.43 +0.1 184,552 + MPMX19_06031 0.43 -1.7 184,552 + MPMX19_06031 0.43 -0.7 184,552 + MPMX19_06031 0.43 -1.8 184,552 + MPMX19_06031 0.43 -0.5 184,552 + MPMX19_06031 0.43 +0.4 184,553 - MPMX19_06031 0.43 -0.6 184,553 - MPMX19_06031 0.43 -0.1 184,553 - MPMX19_06031 0.43 -0.5 184,553 - MPMX19_06031 0.43 -0.7 184,553 - MPMX19_06031 0.43 -0.5 184,810 + MPMX19_06031 0.53 -0.7 184,810 + MPMX19_06031 0.53 -0.9 184,810 + MPMX19_06031 0.53 -0.5 184,810 + MPMX19_06031 0.53 -0.3 184,810 + MPMX19_06031 0.53 -0.7 184,810 + MPMX19_06031 0.53 -1.1 184,811 - MPMX19_06031 0.53 -1.1 184,811 - MPMX19_06031 0.53 -1.1 184,811 - MPMX19_06031 0.53 -0.9 184,811 - MPMX19_06031 0.53 +0.4 184,811 - MPMX19_06031 0.53 -1.1 184,811 - MPMX19_06031 0.53 +2.5 184,811 - MPMX19_06031 0.53 +0.2 184,811 - MPMX19_06031 0.53 -0.9 184,811 - MPMX19_06031 0.53 +1.1 185,014 + MPMX19_06031 0.60 +0.3 185,014 + MPMX19_06031 0.60 -1.1 185,014 + MPMX19_06031 0.60 -0.3 185,014 + MPMX19_06031 0.60 -0.8 185,015 - MPMX19_06031 0.60 -1.1 185,015 - MPMX19_06031 0.60 -1.3 185,015 - MPMX19_06031 0.60 -1.5 185,015 - MPMX19_06031 0.60 -0.9 185,015 - MPMX19_06031 0.60 -0.1 186,139 - -0.1 186,139 - +0.5 186,170 - -0.9 186,198 - +0.1 186,198 - +1.5 186,254 + +0.3 186,265 + -0.9 186,265 + +0.9 186,408 + MPMX19_06032 0.13 +0.1 186,408 + MPMX19_06032 0.13 -0.7 186,408 + MPMX19_06032 0.13 -1.5 186,429 + MPMX19_06032 0.15 -0.7 186,429 + MPMX19_06032 0.15 +0.4 186,429 + MPMX19_06032 0.15 -1.7 186,429 + MPMX19_06032 0.15 +0.9 186,430 - MPMX19_06032 0.15 -0.7 186,459 + MPMX19_06032 0.18 -1.1 186,672 + MPMX19_06032 0.37 -0.5 186,672 + MPMX19_06032 0.37 -0.7 186,672 + MPMX19_06032 0.37 -0.5 186,672 + MPMX19_06032 0.37 -0.1 186,672 + MPMX19_06032 0.37 +0.9 186,672 + MPMX19_06032 0.37 -0.7 186,672 + MPMX19_06032 0.37 -2.6 186,672 + MPMX19_06032 0.37 +0.9 186,672 + MPMX19_06032 0.37 -0.1 186,672 + MPMX19_06032 0.37 -1.3 186,673 - MPMX19_06032 0.37 -2.3 186,673 - MPMX19_06032 0.37 -0.7 186,673 - MPMX19_06032 0.37 -0.5 186,673 - MPMX19_06032 0.37 -0.1 186,673 - MPMX19_06032 0.37 -0.1 186,673 - MPMX19_06032 0.37 -0.1 186,673 - MPMX19_06032 0.37 -0.5 186,673 - MPMX19_06032 0.37 -1.1 186,673 - MPMX19_06032 0.37 -1.7 186,762 + MPMX19_06032 0.46 -1.1 186,762 + MPMX19_06032 0.46 +0.5 186,763 - MPMX19_06032 0.46 -0.9 186,804 + MPMX19_06032 0.50 -1.1 186,804 + MPMX19_06032 0.50 -1.1 186,804 + MPMX19_06032 0.50 -1.5 186,805 - MPMX19_06032 0.50 -0.1 186,939 + MPMX19_06032 0.62 -0.9 186,954 + MPMX19_06032 0.64 -1.5 187,077 + MPMX19_06032 0.75 -0.1 187,077 + MPMX19_06032 0.75 -0.1 187,077 + MPMX19_06032 0.75 -0.1 187,078 - MPMX19_06032 0.75 -0.1 187,078 - MPMX19_06032 0.75 -1.7 187,078 - MPMX19_06032 0.75 -1.5 187,078 - MPMX19_06032 0.75 -0.2 187,078 - MPMX19_06032 0.75 -0.7 187,078 - MPMX19_06032 0.75 +0.3
Or see this region's nucleotide sequence