Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05731

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05729 and MPMX19_05730 are separated by 96 nucleotidesMPMX19_05730 and MPMX19_05731 are separated by 64 nucleotidesMPMX19_05731 and MPMX19_05732 are separated by 43 nucleotidesMPMX19_05732 and MPMX19_05733 overlap by 4 nucleotides MPMX19_05729: MPMX19_05729 - hypothetical protein, at 447,818 to 448,570 _05729 MPMX19_05730: MPMX19_05730 - hypothetical protein, at 448,667 to 449,161 _05730 MPMX19_05731: MPMX19_05731 - hypothetical protein, at 449,226 to 450,509 _05731 MPMX19_05732: MPMX19_05732 - hypothetical protein, at 450,553 to 451,422 _05732 MPMX19_05733: MPMX19_05733 - Biopolymer transport protein ExbD, at 451,419 to 451,847 _05733 Position (kb) 449 450 451Strain fitness (log2 ratio) -2 -1 0 1 2at 448.313 kb on + strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.314 kb on - strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.370 kb on + strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.371 kb on - strand, within MPMX19_05729at 448.424 kb on + strand, within MPMX19_05729at 448.424 kb on + strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.425 kb on - strand, within MPMX19_05729at 448.594 kb on + strandat 448.610 kb on + strandat 448.610 kb on + strandat 448.610 kb on + strandat 448.610 kb on + strandat 448.611 kb on - strandat 448.611 kb on - strandat 448.611 kb on - strandat 448.631 kb on - strandat 448.631 kb on - strandat 449.429 kb on + strand, within MPMX19_05731at 449.430 kb on - strand, within MPMX19_05731at 449.430 kb on - strand, within MPMX19_05731at 449.430 kb on - strand, within MPMX19_05731at 449.431 kb on + strand, within MPMX19_05731at 449.431 kb on + strand, within MPMX19_05731at 449.431 kb on + strand, within MPMX19_05731at 449.431 kb on + strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731at 449.432 kb on - strand, within MPMX19_05731at 449.737 kb on + strand, within MPMX19_05731at 449.737 kb on + strand, within MPMX19_05731at 449.738 kb on - strand, within MPMX19_05731at 449.738 kb on - strand, within MPMX19_05731at 449.738 kb on - strand, within MPMX19_05731at 449.738 kb on - strand, within MPMX19_05731at 449.738 kb on - strand, within MPMX19_05731at 449.738 kb on - strand, within MPMX19_05731at 450.470 kb on - strandat 450.786 kb on - strand, within MPMX19_05732at 451.465 kb on + strand, within MPMX19_05733at 451.465 kb on + strand, within MPMX19_05733

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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448,313 + MPMX19_05729 0.66 -1.2
448,314 - MPMX19_05729 0.66 +0.4
448,314 - MPMX19_05729 0.66 +0.4
448,314 - MPMX19_05729 0.66 -2.2
448,314 - MPMX19_05729 0.66 -1.8
448,314 - MPMX19_05729 0.66 -0.3
448,314 - MPMX19_05729 0.66 +0.8
448,370 + MPMX19_05729 0.73 +1.2
448,370 + MPMX19_05729 0.73 -0.2
448,370 + MPMX19_05729 0.73 -1.2
448,370 + MPMX19_05729 0.73 -1.2
448,370 + MPMX19_05729 0.73 -0.2
448,370 + MPMX19_05729 0.73 +0.8
448,371 - MPMX19_05729 0.73 -0.6
448,371 - MPMX19_05729 0.73 -0.2
448,371 - MPMX19_05729 0.73 -0.7
448,371 - MPMX19_05729 0.73 -0.0
448,371 - MPMX19_05729 0.73 -0.7
448,371 - MPMX19_05729 0.73 +0.2
448,371 - MPMX19_05729 0.73 -0.5
448,424 + MPMX19_05729 0.80 +0.4
448,424 + MPMX19_05729 0.80 -0.2
448,425 - MPMX19_05729 0.81 -1.8
448,425 - MPMX19_05729 0.81 +0.8
448,425 - MPMX19_05729 0.81 +1.4
448,425 - MPMX19_05729 0.81 -1.9
448,425 - MPMX19_05729 0.81 -1.5
448,594 + +0.2
448,610 + -0.2
448,610 + +1.0
448,610 + -1.2
448,610 + -1.2
448,611 - +1.0
448,611 - +0.8
448,611 - -0.6
448,631 - -1.0
448,631 - -0.1
449,429 + MPMX19_05731 0.16 -0.2
449,430 - MPMX19_05731 0.16 +0.8
449,430 - MPMX19_05731 0.16 +1.2
449,430 - MPMX19_05731 0.16 +0.8
449,431 + MPMX19_05731 0.16 +0.1
449,431 + MPMX19_05731 0.16 +0.3
449,431 + MPMX19_05731 0.16 +0.2
449,431 + MPMX19_05731 0.16 -0.8
449,432 - MPMX19_05731 0.16 +1.4
449,432 - MPMX19_05731 0.16 -0.6
449,432 - MPMX19_05731 0.16 +1.0
449,432 - MPMX19_05731 0.16 +1.1
449,432 - MPMX19_05731 0.16 +0.2
449,737 + MPMX19_05731 0.40 -1.6
449,737 + MPMX19_05731 0.40 +0.0
449,738 - MPMX19_05731 0.40 +1.8
449,738 - MPMX19_05731 0.40 -0.6
449,738 - MPMX19_05731 0.40 -2.0
449,738 - MPMX19_05731 0.40 +0.8
449,738 - MPMX19_05731 0.40 +0.6
449,738 - MPMX19_05731 0.40 -1.4
450,470 - +0.4
450,786 - MPMX19_05732 0.27 -0.2
451,465 + MPMX19_05733 0.11 +0.4
451,465 + MPMX19_05733 0.11 +0.7

Or see this region's nucleotide sequence