Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05604

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05603 and MPMX19_05604 are separated by 132 nucleotidesMPMX19_05604 and MPMX19_05605 are separated by 43 nucleotidesMPMX19_05605 and MPMX19_05606 are separated by 160 nucleotides MPMX19_05603: MPMX19_05603 - hypothetical protein, at 313,898 to 315,139 _05603 MPMX19_05604: MPMX19_05604 - hypothetical protein, at 315,272 to 316,474 _05604 MPMX19_05605: MPMX19_05605 - hypothetical protein, at 316,518 to 316,892 _05605 MPMX19_05606: MPMX19_05606 - hypothetical protein, at 317,053 to 317,445 _05606 Position (kb) 315 316 317Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.313 kb on + strand, within MPMX19_05603at 314.314 kb on - strand, within MPMX19_05603at 314.314 kb on - strand, within MPMX19_05603at 314.314 kb on - strand, within MPMX19_05603at 314.314 kb on - strand, within MPMX19_05603at 314.314 kb on - strand, within MPMX19_05603at 314.314 kb on - strand, within MPMX19_05603at 314.314 kb on - strand, within MPMX19_05603at 314.415 kb on + strand, within MPMX19_05603at 314.415 kb on + strand, within MPMX19_05603at 314.416 kb on - strand, within MPMX19_05603at 314.550 kb on + strand, within MPMX19_05603at 314.551 kb on - strand, within MPMX19_05603at 314.551 kb on - strand, within MPMX19_05603at 314.551 kb on - strand, within MPMX19_05603at 314.607 kb on + strand, within MPMX19_05603at 314.607 kb on + strand, within MPMX19_05603at 314.607 kb on + strand, within MPMX19_05603at 314.607 kb on + strand, within MPMX19_05603at 314.607 kb on + strand, within MPMX19_05603at 314.607 kb on + strand, within MPMX19_05603at 314.608 kb on - strand, within MPMX19_05603at 314.608 kb on - strand, within MPMX19_05603at 314.608 kb on - strand, within MPMX19_05603at 314.608 kb on - strand, within MPMX19_05603at 314.608 kb on - strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.730 kb on + strand, within MPMX19_05603at 314.731 kb on - strand, within MPMX19_05603at 314.731 kb on - strand, within MPMX19_05603at 314.731 kb on - strand, within MPMX19_05603at 314.731 kb on - strand, within MPMX19_05603at 314.731 kb on - strand, within MPMX19_05603at 314.731 kb on - strand, within MPMX19_05603at 314.731 kb on - strand, within MPMX19_05603at 314.731 kb on - strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.769 kb on + strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.770 kb on - strand, within MPMX19_05603at 314.859 kb on + strand, within MPMX19_05603at 314.859 kb on + strand, within MPMX19_05603at 314.860 kb on - strand, within MPMX19_05603at 314.889 kb on + strand, within MPMX19_05603at 314.889 kb on + strand, within MPMX19_05603at 314.889 kb on + strand, within MPMX19_05603at 314.890 kb on - strand, within MPMX19_05603at 314.890 kb on - strand, within MPMX19_05603at 314.890 kb on - strand, within MPMX19_05603at 314.890 kb on - strand, within MPMX19_05603at 314.890 kb on - strand, within MPMX19_05603at 314.890 kb on - strand, within MPMX19_05603at 314.890 kb on - strand, within MPMX19_05603at 314.919 kb on + strand, within MPMX19_05603at 314.919 kb on + strand, within MPMX19_05603at 314.919 kb on + strand, within MPMX19_05603at 314.919 kb on + strand, within MPMX19_05603at 314.949 kb on + strand, within MPMX19_05603at 314.949 kb on + strand, within MPMX19_05603at 314.949 kb on + strand, within MPMX19_05603at 314.949 kb on + strand, within MPMX19_05603at 314.949 kb on + strand, within MPMX19_05603at 314.949 kb on + strand, within MPMX19_05603at 314.949 kb on + strand, within MPMX19_05603at 314.949 kb on + strand, within MPMX19_05603at 314.949 kb on + strand, within MPMX19_05603at 314.950 kb on - strand, within MPMX19_05603at 314.950 kb on - strand, within MPMX19_05603at 314.950 kb on - strand, within MPMX19_05603at 314.950 kb on - strand, within MPMX19_05603at 314.950 kb on - strand, within MPMX19_05603at 314.950 kb on - strand, within MPMX19_05603at 314.950 kb on - strand, within MPMX19_05603at 314.950 kb on - strand, within MPMX19_05603at 315.333 kb on - strandat 315.333 kb on - strandat 315.333 kb on - strandat 316.112 kb on + strand, within MPMX19_05604at 316.112 kb on + strand, within MPMX19_05604at 316.112 kb on + strand, within MPMX19_05604at 316.112 kb on + strand, within MPMX19_05604at 316.113 kb on - strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.298 kb on + strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.299 kb on - strand, within MPMX19_05604at 316.388 kb on + strandat 316.388 kb on + strandat 316.388 kb on + strandat 316.388 kb on + strandat 316.389 kb on - strandat 316.389 kb on - strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.415 kb on + strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.416 kb on - strandat 316.428 kb on - strandat 316.428 kb on - strandat 316.537 kb on + strandat 316.537 kb on + strandat 316.537 kb on + strandat 316.538 kb on - strandat 316.821 kb on + strand, within MPMX19_05605at 316.821 kb on + strand, within MPMX19_05605at 316.822 kb on - strand, within MPMX19_05605at 316.822 kb on - strand, within MPMX19_05605at 316.822 kb on - strand, within MPMX19_05605at 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.207 kb on + strand, within MPMX19_05606at 317.207 kb on + strand, within MPMX19_05606at 317.207 kb on + strand, within MPMX19_05606at 317.207 kb on + strand, within MPMX19_05606

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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314,313 + MPMX19_05603 0.33 +0.6
314,313 + MPMX19_05603 0.33 -0.5
314,313 + MPMX19_05603 0.33 -0.2
314,313 + MPMX19_05603 0.33 -2.0
314,313 + MPMX19_05603 0.33 -0.6
314,313 + MPMX19_05603 0.33 -1.2
314,313 + MPMX19_05603 0.33 -0.2
314,313 + MPMX19_05603 0.33 +0.1
314,313 + MPMX19_05603 0.33 -0.8
314,313 + MPMX19_05603 0.33 -0.8
314,313 + MPMX19_05603 0.33 -0.2
314,313 + MPMX19_05603 0.33 -1.9
314,314 - MPMX19_05603 0.33 -1.2
314,314 - MPMX19_05603 0.33 -0.2
314,314 - MPMX19_05603 0.33 -0.9
314,314 - MPMX19_05603 0.33 -2.3
314,314 - MPMX19_05603 0.33 +0.0
314,314 - MPMX19_05603 0.33 -0.5
314,314 - MPMX19_05603 0.33 -0.5
314,415 + MPMX19_05603 0.42 -1.1
314,415 + MPMX19_05603 0.42 -1.5
314,416 - MPMX19_05603 0.42 -0.2
314,550 + MPMX19_05603 0.52 -1.5
314,551 - MPMX19_05603 0.53 -0.7
314,551 - MPMX19_05603 0.53 +0.8
314,551 - MPMX19_05603 0.53 -1.2
314,607 + MPMX19_05603 0.57 -0.2
314,607 + MPMX19_05603 0.57 -0.5
314,607 + MPMX19_05603 0.57 -1.2
314,607 + MPMX19_05603 0.57 -1.2
314,607 + MPMX19_05603 0.57 -0.3
314,607 + MPMX19_05603 0.57 -1.1
314,608 - MPMX19_05603 0.57 -0.2
314,608 - MPMX19_05603 0.57 -0.8
314,608 - MPMX19_05603 0.57 +0.1
314,608 - MPMX19_05603 0.57 +1.8
314,608 - MPMX19_05603 0.57 -1.5
314,730 + MPMX19_05603 0.67 -0.2
314,730 + MPMX19_05603 0.67 +1.8
314,730 + MPMX19_05603 0.67 -1.2
314,730 + MPMX19_05603 0.67 -0.3
314,730 + MPMX19_05603 0.67 +0.1
314,730 + MPMX19_05603 0.67 +0.1
314,730 + MPMX19_05603 0.67 -1.1
314,730 + MPMX19_05603 0.67 -0.5
314,730 + MPMX19_05603 0.67 -0.4
314,730 + MPMX19_05603 0.67 -2.6
314,731 - MPMX19_05603 0.67 -0.2
314,731 - MPMX19_05603 0.67 -0.6
314,731 - MPMX19_05603 0.67 +1.2
314,731 - MPMX19_05603 0.67 +0.3
314,731 - MPMX19_05603 0.67 -2.0
314,731 - MPMX19_05603 0.67 +0.2
314,731 - MPMX19_05603 0.67 +0.2
314,731 - MPMX19_05603 0.67 -1.1
314,769 + MPMX19_05603 0.70 +0.0
314,769 + MPMX19_05603 0.70 +0.4
314,769 + MPMX19_05603 0.70 -0.8
314,769 + MPMX19_05603 0.70 +0.2
314,769 + MPMX19_05603 0.70 +1.1
314,769 + MPMX19_05603 0.70 -0.3
314,769 + MPMX19_05603 0.70 -0.3
314,769 + MPMX19_05603 0.70 -1.2
314,769 + MPMX19_05603 0.70 -0.4
314,769 + MPMX19_05603 0.70 -0.3
314,769 + MPMX19_05603 0.70 -0.3
314,769 + MPMX19_05603 0.70 +1.1
314,769 + MPMX19_05603 0.70 -1.0
314,769 + MPMX19_05603 0.70 -0.8
314,769 + MPMX19_05603 0.70 -0.3
314,770 - MPMX19_05603 0.70 -1.0
314,770 - MPMX19_05603 0.70 -0.8
314,770 - MPMX19_05603 0.70 +0.3
314,770 - MPMX19_05603 0.70 +0.4
314,770 - MPMX19_05603 0.70 -0.2
314,770 - MPMX19_05603 0.70 -1.0
314,770 - MPMX19_05603 0.70 -1.8
314,770 - MPMX19_05603 0.70 -0.8
314,770 - MPMX19_05603 0.70 -0.3
314,770 - MPMX19_05603 0.70 +0.2
314,770 - MPMX19_05603 0.70 -0.9
314,770 - MPMX19_05603 0.70 -0.8
314,770 - MPMX19_05603 0.70 -0.5
314,859 + MPMX19_05603 0.77 -0.8
314,859 + MPMX19_05603 0.77 -0.5
314,860 - MPMX19_05603 0.77 -0.8
314,889 + MPMX19_05603 0.80 -0.8
314,889 + MPMX19_05603 0.80 +0.8
314,889 + MPMX19_05603 0.80 +0.2
314,890 - MPMX19_05603 0.80 +0.8
314,890 - MPMX19_05603 0.80 -0.3
314,890 - MPMX19_05603 0.80 -0.3
314,890 - MPMX19_05603 0.80 -1.2
314,890 - MPMX19_05603 0.80 -3.1
314,890 - MPMX19_05603 0.80 -1.8
314,890 - MPMX19_05603 0.80 -0.9
314,919 + MPMX19_05603 0.82 -0.3
314,919 + MPMX19_05603 0.82 -1.7
314,919 + MPMX19_05603 0.82 -1.5
314,919 + MPMX19_05603 0.82 +0.3
314,949 + MPMX19_05603 0.85 -0.2
314,949 + MPMX19_05603 0.85 -1.3
314,949 + MPMX19_05603 0.85 -0.3
314,949 + MPMX19_05603 0.85 -0.2
314,949 + MPMX19_05603 0.85 -0.2
314,949 + MPMX19_05603 0.85 -0.0
314,949 + MPMX19_05603 0.85 -0.2
314,949 + MPMX19_05603 0.85 -0.8
314,949 + MPMX19_05603 0.85 -0.6
314,950 - MPMX19_05603 0.85 +0.1
314,950 - MPMX19_05603 0.85 -1.8
314,950 - MPMX19_05603 0.85 +0.0
314,950 - MPMX19_05603 0.85 -0.8
314,950 - MPMX19_05603 0.85 +0.1
314,950 - MPMX19_05603 0.85 -0.5
314,950 - MPMX19_05603 0.85 -1.4
314,950 - MPMX19_05603 0.85 -1.5
315,333 - -2.5
315,333 - +1.8
315,333 - -1.8
316,112 + MPMX19_05604 0.70 -0.2
316,112 + MPMX19_05604 0.70 -0.5
316,112 + MPMX19_05604 0.70 -0.5
316,112 + MPMX19_05604 0.70 +0.4
316,113 - MPMX19_05604 0.70 +1.4
316,298 + MPMX19_05604 0.85 +0.8
316,298 + MPMX19_05604 0.85 +0.8
316,298 + MPMX19_05604 0.85 -0.8
316,298 + MPMX19_05604 0.85 -1.0
316,298 + MPMX19_05604 0.85 +0.8
316,298 + MPMX19_05604 0.85 -2.0
316,298 + MPMX19_05604 0.85 -0.8
316,298 + MPMX19_05604 0.85 -1.8
316,299 - MPMX19_05604 0.85 +1.1
316,299 - MPMX19_05604 0.85 -1.7
316,299 - MPMX19_05604 0.85 +0.2
316,299 - MPMX19_05604 0.85 -1.2
316,299 - MPMX19_05604 0.85 -0.8
316,299 - MPMX19_05604 0.85 +0.2
316,299 - MPMX19_05604 0.85 -0.7
316,299 - MPMX19_05604 0.85 -0.7
316,299 - MPMX19_05604 0.85 -0.9
316,299 - MPMX19_05604 0.85 +0.1
316,299 - MPMX19_05604 0.85 +0.0
316,299 - MPMX19_05604 0.85 -0.4
316,299 - MPMX19_05604 0.85 -0.7
316,299 - MPMX19_05604 0.85 -1.8
316,299 - MPMX19_05604 0.85 +0.2
316,299 - MPMX19_05604 0.85 -0.6
316,299 - MPMX19_05604 0.85 -0.3
316,299 - MPMX19_05604 0.85 -1.3
316,299 - MPMX19_05604 0.85 -1.1
316,388 + -1.9
316,388 + +0.4
316,388 + +0.4
316,388 + +0.5
316,389 - -0.9
316,389 - -0.5
316,415 + +0.6
316,415 + -0.5
316,415 + +2.0
316,415 + -0.7
316,415 + -0.8
316,415 + -1.6
316,415 + -0.2
316,415 + -0.8
316,415 + -0.7
316,415 + -1.5
316,415 + +1.1
316,416 - -0.2
316,416 - +0.0
316,416 - +0.6
316,416 - -1.2
316,416 - -0.8
316,416 - -2.0
316,416 - -0.7
316,428 - -2.2
316,428 - -1.3
316,537 + -0.8
316,537 + -2.1
316,537 + -0.2
316,538 - +0.6
316,821 + MPMX19_05605 0.81 +1.8
316,821 + MPMX19_05605 0.81 -1.2
316,822 - MPMX19_05605 0.81 -0.5
316,822 - MPMX19_05605 0.81 -1.1
316,822 - MPMX19_05605 0.81 -2.9
317,051 + -0.6
317,051 + -0.2
317,051 + -0.6
317,051 + -0.2
317,051 + -2.6
317,051 + +0.2
317,052 - -0.3
317,052 - -1.2
317,052 - -0.4
317,052 - -0.8
317,052 - +0.1
317,090 + -1.5
317,090 + +0.8
317,090 + +0.8
317,090 + -0.5
317,090 + -1.9
317,207 + MPMX19_05606 0.39 +0.4
317,207 + MPMX19_05606 0.39 -1.2
317,207 + MPMX19_05606 0.39 -1.2
317,207 + MPMX19_05606 0.39 +0.2

Or see this region's nucleotide sequence