Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05326

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05324 and MPMX19_05325 are separated by 48 nucleotidesMPMX19_05325 and MPMX19_05326 are separated by 84 nucleotidesMPMX19_05326 and MPMX19_05327 are separated by 186 nucleotides MPMX19_05324: MPMX19_05324 - hypothetical protein, at 864,964 to 866,112 _05324 MPMX19_05325: MPMX19_05325 - S-formylglutathione hydrolase YeiG, at 866,161 to 867,012 _05325 MPMX19_05326: MPMX19_05326 - S-(hydroxymethyl)glutathione dehydrogenase, at 867,097 to 868,215 _05326 MPMX19_05327: MPMX19_05327 - HTH-type transcriptional regulator PgrR, at 868,402 to 869,301 _05327 Position (kb) 867 868 869Strain fitness (log2 ratio) -2 -1 0 1 2at 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.225 kb on + strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.226 kb on - strandat 866.237 kb on + strandat 866.237 kb on + strandat 866.237 kb on + strandat 866.238 kb on - strandat 866.432 kb on + strand, within MPMX19_05325at 866.507 kb on + strand, within MPMX19_05325at 866.507 kb on + strand, within MPMX19_05325at 866.507 kb on + strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.508 kb on - strand, within MPMX19_05325at 866.595 kb on - strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.633 kb on + strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.634 kb on - strand, within MPMX19_05325at 866.684 kb on + strand, within MPMX19_05325at 866.684 kb on + strand, within MPMX19_05325at 866.684 kb on + strand, within MPMX19_05325at 866.685 kb on - strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.858 kb on + strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.859 kb on - strand, within MPMX19_05325at 866.861 kb on - strand, within MPMX19_05325at 867.107 kb on + strandat 867.107 kb on + strandat 867.107 kb on + strandat 867.107 kb on + strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.108 kb on - strandat 867.198 kb on + strandat 867.198 kb on + strandat 867.199 kb on - strandat 867.224 kb on + strand, within MPMX19_05326at 867.225 kb on - strand, within MPMX19_05326at 867.225 kb on - strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.236 kb on + strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.237 kb on - strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.437 kb on + strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.438 kb on - strand, within MPMX19_05326at 867.700 kb on - strand, within MPMX19_05326at 867.782 kb on + strand, within MPMX19_05326at 867.783 kb on - strand, within MPMX19_05326at 867.783 kb on - strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.809 kb on + strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.810 kb on - strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.950 kb on + strand, within MPMX19_05326at 867.951 kb on - strand, within MPMX19_05326at 867.951 kb on - strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.079 kb on + strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.080 kb on - strand, within MPMX19_05326at 868.310 kb on + strandat 868.310 kb on + strandat 868.310 kb on + strandat 868.310 kb on + strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.311 kb on - strandat 868.351 kb on + strandat 868.364 kb on + strandat 868.549 kb on + strand, within MPMX19_05327at 868.550 kb on - strand, within MPMX19_05327at 868.550 kb on - strand, within MPMX19_05327at 868.550 kb on - strand, within MPMX19_05327at 868.717 kb on + strand, within MPMX19_05327at 868.718 kb on - strand, within MPMX19_05327at 868.718 kb on - strand, within MPMX19_05327at 868.829 kb on - strand, within MPMX19_05327at 868.924 kb on + strand, within MPMX19_05327at 868.924 kb on + strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 868.925 kb on - strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.125 kb on + strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.126 kb on - strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.128 kb on + strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.129 kb on - strand, within MPMX19_05327at 869.213 kb on - strandat 869.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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866,225 + -0.5
866,225 + -1.0
866,225 + -0.3
866,225 + -0.0
866,225 + -0.9
866,225 + -0.3
866,225 + -0.5
866,225 + +0.5
866,225 + +0.9
866,225 + -0.2
866,225 + -0.1
866,225 + +1.3
866,225 + -1.2
866,225 + +0.1
866,225 + -0.3
866,225 + -2.2
866,225 + -0.7
866,225 + -0.0
866,225 + -0.1
866,225 + -1.1
866,226 - -2.2
866,226 - -1.0
866,226 - +0.3
866,226 - -2.7
866,226 - -0.9
866,226 - +0.9
866,226 - -1.5
866,226 - +0.1
866,226 - +0.4
866,226 - +0.4
866,226 - -1.3
866,226 - +1.1
866,226 - +0.4
866,237 + +0.1
866,237 + -1.9
866,237 + +0.3
866,238 - +0.8
866,432 + MPMX19_05325 0.32 -0.8
866,507 + MPMX19_05325 0.41 -0.2
866,507 + MPMX19_05325 0.41 +0.5
866,507 + MPMX19_05325 0.41 -0.3
866,508 - MPMX19_05325 0.41 +0.0
866,508 - MPMX19_05325 0.41 +0.5
866,508 - MPMX19_05325 0.41 +0.7
866,508 - MPMX19_05325 0.41 -0.2
866,595 - MPMX19_05325 0.51 +0.8
866,633 + MPMX19_05325 0.55 -2.0
866,633 + MPMX19_05325 0.55 -0.3
866,633 + MPMX19_05325 0.55 +1.5
866,633 + MPMX19_05325 0.55 -1.9
866,633 + MPMX19_05325 0.55 -1.2
866,634 - MPMX19_05325 0.56 -0.5
866,634 - MPMX19_05325 0.56 +0.5
866,634 - MPMX19_05325 0.56 -0.7
866,634 - MPMX19_05325 0.56 -0.2
866,634 - MPMX19_05325 0.56 -1.0
866,634 - MPMX19_05325 0.56 -0.9
866,684 + MPMX19_05325 0.61 -1.0
866,684 + MPMX19_05325 0.61 +0.5
866,684 + MPMX19_05325 0.61 +0.9
866,685 - MPMX19_05325 0.62 +0.6
866,858 + MPMX19_05325 0.82 -0.1
866,858 + MPMX19_05325 0.82 +1.1
866,858 + MPMX19_05325 0.82 -1.2
866,858 + MPMX19_05325 0.82 +0.0
866,859 - MPMX19_05325 0.82 -2.1
866,859 - MPMX19_05325 0.82 -0.2
866,859 - MPMX19_05325 0.82 -0.7
866,859 - MPMX19_05325 0.82 -0.2
866,859 - MPMX19_05325 0.82 +0.7
866,859 - MPMX19_05325 0.82 -1.2
866,859 - MPMX19_05325 0.82 -1.6
866,859 - MPMX19_05325 0.82 -0.9
866,859 - MPMX19_05325 0.82 -1.7
866,859 - MPMX19_05325 0.82 -0.7
866,861 - MPMX19_05325 0.82 -0.4
867,107 + +0.1
867,107 + -0.5
867,107 + +0.5
867,107 + -1.0
867,108 - +0.8
867,108 - -0.2
867,108 - -1.2
867,108 - -0.0
867,108 - -0.5
867,108 - -0.7
867,198 + +0.5
867,198 + +0.5
867,199 - -0.1
867,224 + MPMX19_05326 0.11 -1.0
867,225 - MPMX19_05326 0.11 -0.9
867,225 - MPMX19_05326 0.11 -0.7
867,236 + MPMX19_05326 0.12 -0.5
867,236 + MPMX19_05326 0.12 +1.5
867,236 + MPMX19_05326 0.12 +0.1
867,236 + MPMX19_05326 0.12 -0.5
867,236 + MPMX19_05326 0.12 -1.3
867,236 + MPMX19_05326 0.12 -1.2
867,236 + MPMX19_05326 0.12 -1.2
867,236 + MPMX19_05326 0.12 -0.7
867,236 + MPMX19_05326 0.12 -0.9
867,236 + MPMX19_05326 0.12 -0.8
867,237 - MPMX19_05326 0.13 +0.1
867,237 - MPMX19_05326 0.13 +1.1
867,237 - MPMX19_05326 0.13 +1.7
867,237 - MPMX19_05326 0.13 +0.3
867,237 - MPMX19_05326 0.13 -0.2
867,237 - MPMX19_05326 0.13 +0.4
867,237 - MPMX19_05326 0.13 -1.5
867,237 - MPMX19_05326 0.13 -0.3
867,437 + MPMX19_05326 0.30 -0.9
867,437 + MPMX19_05326 0.30 +1.1
867,437 + MPMX19_05326 0.30 +0.5
867,437 + MPMX19_05326 0.30 -2.0
867,437 + MPMX19_05326 0.30 -0.2
867,438 - MPMX19_05326 0.30 +1.5
867,438 - MPMX19_05326 0.30 -0.3
867,438 - MPMX19_05326 0.30 +0.8
867,438 - MPMX19_05326 0.30 +0.4
867,700 - MPMX19_05326 0.54 +2.7
867,782 + MPMX19_05326 0.61 -2.3
867,783 - MPMX19_05326 0.61 +0.5
867,783 - MPMX19_05326 0.61 -1.4
867,809 + MPMX19_05326 0.64 -0.2
867,809 + MPMX19_05326 0.64 -1.5
867,809 + MPMX19_05326 0.64 -2.0
867,809 + MPMX19_05326 0.64 -2.2
867,809 + MPMX19_05326 0.64 -0.6
867,809 + MPMX19_05326 0.64 -1.2
867,809 + MPMX19_05326 0.64 -1.9
867,809 + MPMX19_05326 0.64 -1.6
867,810 - MPMX19_05326 0.64 +0.1
867,810 - MPMX19_05326 0.64 +0.4
867,810 - MPMX19_05326 0.64 -0.5
867,810 - MPMX19_05326 0.64 +0.1
867,810 - MPMX19_05326 0.64 -0.3
867,810 - MPMX19_05326 0.64 -0.2
867,810 - MPMX19_05326 0.64 -1.9
867,810 - MPMX19_05326 0.64 -1.0
867,810 - MPMX19_05326 0.64 -0.0
867,810 - MPMX19_05326 0.64 -1.2
867,950 + MPMX19_05326 0.76 +0.5
867,950 + MPMX19_05326 0.76 -0.9
867,950 + MPMX19_05326 0.76 -1.6
867,950 + MPMX19_05326 0.76 +0.7
867,951 - MPMX19_05326 0.76 -0.5
867,951 - MPMX19_05326 0.76 -0.7
868,079 + MPMX19_05326 0.88 -1.3
868,079 + MPMX19_05326 0.88 -0.9
868,079 + MPMX19_05326 0.88 -0.9
868,079 + MPMX19_05326 0.88 -0.5
868,079 + MPMX19_05326 0.88 +0.5
868,079 + MPMX19_05326 0.88 -0.9
868,080 - MPMX19_05326 0.88 +0.4
868,080 - MPMX19_05326 0.88 -2.2
868,080 - MPMX19_05326 0.88 -1.2
868,080 - MPMX19_05326 0.88 +0.1
868,080 - MPMX19_05326 0.88 -0.1
868,080 - MPMX19_05326 0.88 +0.1
868,310 + -0.9
868,310 + +0.3
868,310 + +0.5
868,310 + -0.7
868,311 - -1.2
868,311 - -1.0
868,311 - -2.6
868,311 - -0.7
868,311 - -0.5
868,311 - +0.3
868,311 - -0.7
868,311 - -1.3
868,351 + +0.5
868,364 + +1.1
868,549 + MPMX19_05327 0.16 -0.9
868,550 - MPMX19_05327 0.16 -0.7
868,550 - MPMX19_05327 0.16 -2.1
868,550 - MPMX19_05327 0.16 +1.7
868,717 + MPMX19_05327 0.35 +1.1
868,718 - MPMX19_05327 0.35 +0.5
868,718 - MPMX19_05327 0.35 -0.9
868,829 - MPMX19_05327 0.47 +0.0
868,924 + MPMX19_05327 0.58 -1.0
868,924 + MPMX19_05327 0.58 -0.3
868,925 - MPMX19_05327 0.58 -1.3
868,925 - MPMX19_05327 0.58 -0.5
868,925 - MPMX19_05327 0.58 -1.2
868,925 - MPMX19_05327 0.58 -1.2
869,125 + MPMX19_05327 0.80 -1.2
869,125 + MPMX19_05327 0.80 -0.0
869,125 + MPMX19_05327 0.80 -0.9
869,126 - MPMX19_05327 0.80 -1.3
869,126 - MPMX19_05327 0.80 -0.4
869,126 - MPMX19_05327 0.80 -1.9
869,126 - MPMX19_05327 0.80 +0.9
869,126 - MPMX19_05327 0.80 -0.3
869,126 - MPMX19_05327 0.80 -0.5
869,128 + MPMX19_05327 0.81 +0.8
869,128 + MPMX19_05327 0.81 -0.1
869,128 + MPMX19_05327 0.81 -1.2
869,128 + MPMX19_05327 0.81 -0.4
869,128 + MPMX19_05327 0.81 +0.1
869,128 + MPMX19_05327 0.81 -0.0
869,129 - MPMX19_05327 0.81 -1.0
869,129 - MPMX19_05327 0.81 -0.0
869,129 - MPMX19_05327 0.81 -0.3
869,129 - MPMX19_05327 0.81 -1.6
869,129 - MPMX19_05327 0.81 -1.0
869,129 - MPMX19_05327 0.81 -1.4
869,129 - MPMX19_05327 0.81 -0.9
869,213 - -0.2
869,213 - -0.3

Or see this region's nucleotide sequence