Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04877

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04875 and MPMX19_04876 overlap by 4 nucleotidesMPMX19_04876 and MPMX19_04877 overlap by 4 nucleotidesMPMX19_04877 and MPMX19_04878 are separated by 114 nucleotides MPMX19_04875: MPMX19_04875 - Sensor histidine kinase WalK, at 318,481 to 319,428 _04875 MPMX19_04876: MPMX19_04876 - hypothetical protein, at 319,425 to 320,213 _04876 MPMX19_04877: MPMX19_04877 - hypothetical protein, at 320,210 to 322,096 _04877 MPMX19_04878: MPMX19_04878 - Agmatine deiminase, at 322,211 to 323,254 _04878 Position (kb) 320 321 322 323Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 319.282 kb on - strand, within MPMX19_04875at 319.581 kb on + strand, within MPMX19_04876at 319.581 kb on + strand, within MPMX19_04876at 319.581 kb on + strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.582 kb on - strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.861 kb on + strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.862 kb on - strand, within MPMX19_04876at 319.896 kb on - strand, within MPMX19_04876at 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.166 kb on + strandat 320.167 kb on - strandat 320.167 kb on - strandat 320.167 kb on - strandat 320.167 kb on - strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.211 kb on + strandat 320.212 kb on - strandat 320.212 kb on - strandat 320.212 kb on - strandat 320.212 kb on - strandat 320.212 kb on - strandat 320.574 kb on + strand, within MPMX19_04877at 320.575 kb on - strand, within MPMX19_04877at 320.575 kb on - strand, within MPMX19_04877at 320.575 kb on - strand, within MPMX19_04877at 320.575 kb on - strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.871 kb on + strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 320.872 kb on - strand, within MPMX19_04877at 321.072 kb on + strand, within MPMX19_04877at 321.072 kb on + strand, within MPMX19_04877at 321.072 kb on + strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.073 kb on - strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.340 kb on - strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 322.070 kb on + strandat 322.070 kb on + strandat 322.070 kb on + strandat 322.070 kb on + strandat 322.071 kb on - strandat 322.270 kb on - strandat 322.386 kb on + strand, within MPMX19_04878at 322.386 kb on + strand, within MPMX19_04878at 322.386 kb on + strand, within MPMX19_04878at 322.386 kb on + strand, within MPMX19_04878at 322.386 kb on + strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.398 kb on + strand, within MPMX19_04878at 322.398 kb on + strand, within MPMX19_04878at 322.399 kb on - strand, within MPMX19_04878at 322.399 kb on - strand, within MPMX19_04878at 322.399 kb on - strand, within MPMX19_04878at 322.399 kb on - strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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319,282 - MPMX19_04875 0.84 +0.5
319,581 + MPMX19_04876 0.20 -1.3
319,581 + MPMX19_04876 0.20 -1.3
319,581 + MPMX19_04876 0.20 -0.1
319,582 - MPMX19_04876 0.20 -1.6
319,582 - MPMX19_04876 0.20 -0.7
319,582 - MPMX19_04876 0.20 +0.0
319,582 - MPMX19_04876 0.20 +0.0
319,582 - MPMX19_04876 0.20 -1.0
319,582 - MPMX19_04876 0.20 -0.1
319,861 + MPMX19_04876 0.55 +0.8
319,861 + MPMX19_04876 0.55 -0.7
319,861 + MPMX19_04876 0.55 -0.8
319,861 + MPMX19_04876 0.55 +1.0
319,861 + MPMX19_04876 0.55 -0.3
319,861 + MPMX19_04876 0.55 -0.5
319,861 + MPMX19_04876 0.55 +0.4
319,861 + MPMX19_04876 0.55 +0.9
319,862 - MPMX19_04876 0.55 -0.6
319,862 - MPMX19_04876 0.55 +0.4
319,862 - MPMX19_04876 0.55 -1.2
319,862 - MPMX19_04876 0.55 -0.2
319,862 - MPMX19_04876 0.55 +0.0
319,862 - MPMX19_04876 0.55 -1.3
319,862 - MPMX19_04876 0.55 -1.0
319,862 - MPMX19_04876 0.55 -1.4
319,862 - MPMX19_04876 0.55 +0.4
319,896 - MPMX19_04876 0.60 -2.6
320,166 + +2.0
320,166 + -0.6
320,166 + +0.2
320,166 + +1.2
320,166 + -2.0
320,166 + -0.6
320,166 + -0.3
320,166 + -0.3
320,167 - +0.5
320,167 - -0.2
320,167 - -1.6
320,167 - -0.6
320,211 + +0.6
320,211 + -1.0
320,211 + +2.0
320,211 + +1.2
320,211 + +0.3
320,211 + -1.0
320,212 - +0.2
320,212 - -1.0
320,212 - -1.3
320,212 - +0.2
320,212 - +0.3
320,574 + MPMX19_04877 0.19 -1.1
320,575 - MPMX19_04877 0.19 -0.3
320,575 - MPMX19_04877 0.19 -0.7
320,575 - MPMX19_04877 0.19 -1.8
320,575 - MPMX19_04877 0.19 -1.4
320,871 + MPMX19_04877 0.35 -2.3
320,871 + MPMX19_04877 0.35 -1.2
320,871 + MPMX19_04877 0.35 -0.4
320,871 + MPMX19_04877 0.35 -1.3
320,871 + MPMX19_04877 0.35 -0.4
320,872 - MPMX19_04877 0.35 +0.0
320,872 - MPMX19_04877 0.35 -1.0
320,872 - MPMX19_04877 0.35 +1.0
320,872 - MPMX19_04877 0.35 -0.7
320,872 - MPMX19_04877 0.35 -0.3
320,872 - MPMX19_04877 0.35 -1.0
321,072 + MPMX19_04877 0.46 -2.3
321,072 + MPMX19_04877 0.46 -1.3
321,072 + MPMX19_04877 0.46 -0.9
321,073 - MPMX19_04877 0.46 -1.0
321,073 - MPMX19_04877 0.46 -0.8
321,073 - MPMX19_04877 0.46 +0.0
321,073 - MPMX19_04877 0.46 -0.6
321,073 - MPMX19_04877 0.46 -0.6
321,073 - MPMX19_04877 0.46 -0.6
321,073 - MPMX19_04877 0.46 -0.3
321,306 + MPMX19_04877 0.58 -0.4
321,306 + MPMX19_04877 0.58 -2.1
321,306 + MPMX19_04877 0.58 -0.3
321,306 + MPMX19_04877 0.58 -1.3
321,306 + MPMX19_04877 0.58 -0.6
321,306 + MPMX19_04877 0.58 -0.7
321,307 - MPMX19_04877 0.58 -1.0
321,307 - MPMX19_04877 0.58 -1.0
321,307 - MPMX19_04877 0.58 -1.8
321,307 - MPMX19_04877 0.58 +0.1
321,307 - MPMX19_04877 0.58 -1.6
321,307 - MPMX19_04877 0.58 -1.1
321,340 - MPMX19_04877 0.60 -0.7
321,771 + MPMX19_04877 0.83 -0.8
321,771 + MPMX19_04877 0.83 -0.1
321,771 + MPMX19_04877 0.83 -0.6
321,771 + MPMX19_04877 0.83 -1.2
321,771 + MPMX19_04877 0.83 +0.7
321,771 + MPMX19_04877 0.83 +0.0
321,771 + MPMX19_04877 0.83 +1.0
321,771 + MPMX19_04877 0.83 -1.1
321,771 + MPMX19_04877 0.83 -0.8
321,772 - MPMX19_04877 0.83 -0.6
321,772 - MPMX19_04877 0.83 -0.8
321,772 - MPMX19_04877 0.83 -1.1
321,772 - MPMX19_04877 0.83 -0.6
321,772 - MPMX19_04877 0.83 +1.1
321,772 - MPMX19_04877 0.83 +0.0
321,772 - MPMX19_04877 0.83 +0.0
321,978 + -0.6
321,978 + +0.0
321,978 + -1.0
321,978 + -1.3
321,978 + -1.0
321,978 + +0.0
321,978 + -1.1
321,978 + +0.3
321,979 - +1.4
321,979 - +1.0
321,979 - -0.9
321,979 - -0.5
321,979 - +1.4
321,979 - -0.7
321,979 - -0.1
321,979 - -0.8
321,979 - -0.4
321,979 - -3.5
321,979 - +0.5
321,979 - +1.4
322,070 + -0.2
322,070 + -0.8
322,070 + +0.0
322,070 + -1.7
322,071 - -2.4
322,270 - +0.2
322,386 + MPMX19_04878 0.17 +0.3
322,386 + MPMX19_04878 0.17 -0.1
322,386 + MPMX19_04878 0.17 +0.0
322,386 + MPMX19_04878 0.17 -0.6
322,386 + MPMX19_04878 0.17 +1.0
322,387 - MPMX19_04878 0.17 -0.3
322,387 - MPMX19_04878 0.17 -1.4
322,387 - MPMX19_04878 0.17 +0.0
322,387 - MPMX19_04878 0.17 +1.6
322,387 - MPMX19_04878 0.17 +0.2
322,387 - MPMX19_04878 0.17 -1.6
322,387 - MPMX19_04878 0.17 -1.0
322,387 - MPMX19_04878 0.17 +1.0
322,387 - MPMX19_04878 0.17 -1.3
322,387 - MPMX19_04878 0.17 -1.0
322,387 - MPMX19_04878 0.17 -0.3
322,398 + MPMX19_04878 0.18 -0.3
322,398 + MPMX19_04878 0.18 -1.3
322,399 - MPMX19_04878 0.18 -1.0
322,399 - MPMX19_04878 0.18 -0.5
322,399 - MPMX19_04878 0.18 -1.0
322,399 - MPMX19_04878 0.18 -0.4
322,629 + MPMX19_04878 0.40 -0.8
322,629 + MPMX19_04878 0.40 -1.6
322,629 + MPMX19_04878 0.40 -0.8
322,629 + MPMX19_04878 0.40 -0.6
322,875 + MPMX19_04878 0.64 +0.7
322,875 + MPMX19_04878 0.64 +1.4
322,875 + MPMX19_04878 0.64 -1.6
322,875 + MPMX19_04878 0.64 +0.3
322,875 + MPMX19_04878 0.64 -0.3
322,875 + MPMX19_04878 0.64 -0.8
322,876 - MPMX19_04878 0.64 -1.8
322,876 - MPMX19_04878 0.64 +0.0
322,876 - MPMX19_04878 0.64 -1.8
322,876 - MPMX19_04878 0.64 -1.6
322,876 - MPMX19_04878 0.64 -1.3
322,876 - MPMX19_04878 0.64 -2.1
322,876 - MPMX19_04878 0.64 -1.3
322,876 - MPMX19_04878 0.64 -0.1

Or see this region's nucleotide sequence