Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04592

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04590 and MPMX19_04591 are separated by 8 nucleotidesMPMX19_04591 and MPMX19_04592 are separated by 35 nucleotidesMPMX19_04592 and MPMX19_04593 are separated by 81 nucleotides MPMX19_04590: MPMX19_04590 - Nitrate import ATP-binding protein NrtD, at 972,571 to 973,404 _04590 MPMX19_04591: MPMX19_04591 - hypothetical protein, at 973,413 to 974,300 _04591 MPMX19_04592: MPMX19_04592 - hypothetical protein, at 974,336 to 975,370 _04592 MPMX19_04593: MPMX19_04593 - Adaptive-response sensory-kinase SasA, at 975,452 to 977,950 _04593 Position (kb) 974 975 976Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 973.533 kb on + strand, within MPMX19_04591at 973.533 kb on + strand, within MPMX19_04591at 973.534 kb on - strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.597 kb on - strand, within MPMX19_04591at 973.597 kb on - strand, within MPMX19_04591at 973.729 kb on - strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.993 kb on - strand, within MPMX19_04591at 973.993 kb on - strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.320 kb on + strandat 974.462 kb on + strand, within MPMX19_04592at 974.462 kb on + strand, within MPMX19_04592at 974.462 kb on + strand, within MPMX19_04592at 974.462 kb on + strand, within MPMX19_04592at 974.463 kb on - strand, within MPMX19_04592at 974.463 kb on - strand, within MPMX19_04592at 974.463 kb on - strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.474 kb on + strand, within MPMX19_04592at 974.475 kb on - strand, within MPMX19_04592at 974.723 kb on + strand, within MPMX19_04592at 974.723 kb on + strand, within MPMX19_04592at 974.723 kb on + strand, within MPMX19_04592at 974.723 kb on + strand, within MPMX19_04592at 974.724 kb on - strand, within MPMX19_04592at 974.724 kb on - strand, within MPMX19_04592at 974.864 kb on + strand, within MPMX19_04592at 974.864 kb on + strand, within MPMX19_04592at 974.865 kb on - strand, within MPMX19_04592at 974.865 kb on - strand, within MPMX19_04592at 974.865 kb on - strand, within MPMX19_04592at 974.865 kb on - strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.912 kb on + strand, within MPMX19_04592at 974.913 kb on - strand, within MPMX19_04592at 974.969 kb on + strand, within MPMX19_04592at 974.970 kb on - strand, within MPMX19_04592at 974.970 kb on - strand, within MPMX19_04592at 975.056 kb on + strand, within MPMX19_04592at 975.056 kb on + strand, within MPMX19_04592at 975.056 kb on + strand, within MPMX19_04592at 975.056 kb on + strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.057 kb on - strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.170 kb on + strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.171 kb on - strand, within MPMX19_04592at 975.514 kb on + strandat 975.514 kb on + strandat 975.514 kb on + strandat 975.515 kb on - strandat 975.515 kb on - strandat 975.515 kb on - strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.516 kb on + strandat 975.517 kb on - strandat 975.517 kb on - strandat 975.517 kb on - strandat 975.517 kb on - strandat 975.517 kb on - strandat 975.517 kb on - strandat 975.621 kb on + strandat 975.622 kb on - strandat 975.622 kb on - strandat 975.622 kb on - strandat 975.622 kb on - strandat 975.672 kb on + strandat 975.672 kb on + strandat 975.672 kb on + strandat 975.750 kb on + strand, within MPMX19_04593at 975.750 kb on + strand, within MPMX19_04593at 975.751 kb on - strand, within MPMX19_04593at 975.751 kb on - strand, within MPMX19_04593at 975.751 kb on - strand, within MPMX19_04593at 975.807 kb on + strand, within MPMX19_04593at 975.807 kb on + strand, within MPMX19_04593at 975.808 kb on - strand, within MPMX19_04593at 975.808 kb on - strand, within MPMX19_04593at 975.825 kb on + strand, within MPMX19_04593at 975.825 kb on + strand, within MPMX19_04593at 975.826 kb on - strand, within MPMX19_04593at 975.834 kb on + strand, within MPMX19_04593at 975.834 kb on + strand, within MPMX19_04593at 975.834 kb on + strand, within MPMX19_04593at 975.834 kb on + strand, within MPMX19_04593at 975.834 kb on + strand, within MPMX19_04593at 975.834 kb on + strand, within MPMX19_04593at 975.834 kb on + strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.835 kb on - strand, within MPMX19_04593at 975.967 kb on - strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.993 kb on + strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 975.994 kb on - strand, within MPMX19_04593at 976.098 kb on + strand, within MPMX19_04593at 976.098 kb on + strand, within MPMX19_04593at 976.098 kb on + strand, within MPMX19_04593at 976.098 kb on + strand, within MPMX19_04593at 976.188 kb on + strand, within MPMX19_04593at 976.189 kb on - strand, within MPMX19_04593

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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973,533 + MPMX19_04591 0.14 +0.6
973,533 + MPMX19_04591 0.14 -1.9
973,534 - MPMX19_04591 0.14 -1.0
973,596 + MPMX19_04591 0.21 -0.1
973,596 + MPMX19_04591 0.21 -1.1
973,596 + MPMX19_04591 0.21 +1.2
973,596 + MPMX19_04591 0.21 -0.7
973,597 - MPMX19_04591 0.21 +0.1
973,597 - MPMX19_04591 0.21 -0.2
973,729 - MPMX19_04591 0.36 -0.8
973,992 + MPMX19_04591 0.65 -1.1
973,992 + MPMX19_04591 0.65 +0.6
973,992 + MPMX19_04591 0.65 -0.2
973,992 + MPMX19_04591 0.65 -0.2
973,992 + MPMX19_04591 0.65 -0.8
973,993 - MPMX19_04591 0.65 +0.5
973,993 - MPMX19_04591 0.65 +0.1
974,154 + MPMX19_04591 0.83 +2.2
974,154 + MPMX19_04591 0.83 +0.9
974,154 + MPMX19_04591 0.83 -2.1
974,154 + MPMX19_04591 0.83 +0.2
974,154 + MPMX19_04591 0.83 +1.1
974,154 + MPMX19_04591 0.83 +0.1
974,154 + MPMX19_04591 0.83 +0.2
974,154 + MPMX19_04591 0.83 +0.4
974,154 + MPMX19_04591 0.83 +0.5
974,155 - MPMX19_04591 0.84 +0.6
974,155 - MPMX19_04591 0.84 -1.1
974,155 - MPMX19_04591 0.84 -1.7
974,155 - MPMX19_04591 0.84 +0.2
974,155 - MPMX19_04591 0.84 -0.3
974,320 + -1.1
974,462 + MPMX19_04592 0.12 +0.6
974,462 + MPMX19_04592 0.12 +0.0
974,462 + MPMX19_04592 0.12 -1.9
974,462 + MPMX19_04592 0.12 -0.6
974,463 - MPMX19_04592 0.12 -0.1
974,463 - MPMX19_04592 0.12 -0.8
974,463 - MPMX19_04592 0.12 -0.5
974,474 + MPMX19_04592 0.13 -0.4
974,474 + MPMX19_04592 0.13 -0.5
974,474 + MPMX19_04592 0.13 -0.4
974,474 + MPMX19_04592 0.13 -0.1
974,474 + MPMX19_04592 0.13 +0.3
974,475 - MPMX19_04592 0.13 -0.5
974,723 + MPMX19_04592 0.37 -2.2
974,723 + MPMX19_04592 0.37 -0.4
974,723 + MPMX19_04592 0.37 -2.5
974,723 + MPMX19_04592 0.37 -0.8
974,724 - MPMX19_04592 0.37 -0.2
974,724 - MPMX19_04592 0.37 -0.0
974,864 + MPMX19_04592 0.51 -2.3
974,864 + MPMX19_04592 0.51 -0.4
974,865 - MPMX19_04592 0.51 -1.1
974,865 - MPMX19_04592 0.51 -0.7
974,865 - MPMX19_04592 0.51 -0.7
974,865 - MPMX19_04592 0.51 -0.8
974,912 + MPMX19_04592 0.56 -0.7
974,912 + MPMX19_04592 0.56 -0.7
974,912 + MPMX19_04592 0.56 -1.4
974,912 + MPMX19_04592 0.56 -0.2
974,912 + MPMX19_04592 0.56 -0.4
974,912 + MPMX19_04592 0.56 -0.1
974,912 + MPMX19_04592 0.56 +0.0
974,913 - MPMX19_04592 0.56 +0.7
974,969 + MPMX19_04592 0.61 -0.6
974,970 - MPMX19_04592 0.61 -0.1
974,970 - MPMX19_04592 0.61 -1.4
975,056 + MPMX19_04592 0.70 -0.1
975,056 + MPMX19_04592 0.70 +0.4
975,056 + MPMX19_04592 0.70 -1.1
975,056 + MPMX19_04592 0.70 -0.2
975,057 - MPMX19_04592 0.70 -0.3
975,057 - MPMX19_04592 0.70 +0.3
975,057 - MPMX19_04592 0.70 +0.3
975,057 - MPMX19_04592 0.70 +0.2
975,057 - MPMX19_04592 0.70 -1.2
975,170 + MPMX19_04592 0.81 +0.7
975,170 + MPMX19_04592 0.81 +0.9
975,170 + MPMX19_04592 0.81 -0.7
975,170 + MPMX19_04592 0.81 -0.4
975,170 + MPMX19_04592 0.81 -0.3
975,170 + MPMX19_04592 0.81 +0.7
975,170 + MPMX19_04592 0.81 +0.5
975,170 + MPMX19_04592 0.81 +1.1
975,170 + MPMX19_04592 0.81 -0.1
975,170 + MPMX19_04592 0.81 +0.1
975,170 + MPMX19_04592 0.81 -0.9
975,170 + MPMX19_04592 0.81 -1.2
975,170 + MPMX19_04592 0.81 -1.1
975,170 + MPMX19_04592 0.81 -0.1
975,170 + MPMX19_04592 0.81 -1.1
975,171 - MPMX19_04592 0.81 +0.0
975,171 - MPMX19_04592 0.81 +1.6
975,171 - MPMX19_04592 0.81 -0.1
975,171 - MPMX19_04592 0.81 -0.8
975,171 - MPMX19_04592 0.81 -1.1
975,171 - MPMX19_04592 0.81 -1.0
975,171 - MPMX19_04592 0.81 -0.7
975,171 - MPMX19_04592 0.81 -1.7
975,171 - MPMX19_04592 0.81 -0.1
975,171 - MPMX19_04592 0.81 -1.1
975,171 - MPMX19_04592 0.81 +0.9
975,171 - MPMX19_04592 0.81 -0.4
975,171 - MPMX19_04592 0.81 -0.2
975,171 - MPMX19_04592 0.81 -1.7
975,171 - MPMX19_04592 0.81 -1.1
975,171 - MPMX19_04592 0.81 +0.9
975,171 - MPMX19_04592 0.81 -0.2
975,171 - MPMX19_04592 0.81 +1.3
975,514 + -0.8
975,514 + -0.6
975,514 + +1.5
975,515 - +0.1
975,515 - -0.2
975,515 - -1.1
975,516 + -0.7
975,516 + -0.1
975,516 + +1.2
975,516 + -1.4
975,516 + -1.4
975,516 + -2.5
975,516 + -0.5
975,516 + -1.4
975,516 + -0.4
975,516 + +0.9
975,516 + -0.1
975,516 + -0.7
975,516 + -1.1
975,516 + +0.5
975,516 + -0.7
975,516 + -1.1
975,517 - +0.4
975,517 - -0.3
975,517 - -0.1
975,517 - +0.6
975,517 - -2.2
975,517 - -1.7
975,621 + +1.2
975,622 - +0.0
975,622 - -1.4
975,622 - +0.5
975,622 - -0.4
975,672 + -0.4
975,672 + -0.1
975,672 + -1.1
975,750 + MPMX19_04593 0.12 -1.1
975,750 + MPMX19_04593 0.12 -0.1
975,751 - MPMX19_04593 0.12 +0.1
975,751 - MPMX19_04593 0.12 +0.1
975,751 - MPMX19_04593 0.12 -0.7
975,807 + MPMX19_04593 0.14 +1.3
975,807 + MPMX19_04593 0.14 -1.9
975,808 - MPMX19_04593 0.14 +1.5
975,808 - MPMX19_04593 0.14 -1.7
975,825 + MPMX19_04593 0.15 +0.6
975,825 + MPMX19_04593 0.15 -0.8
975,826 - MPMX19_04593 0.15 +0.3
975,834 + MPMX19_04593 0.15 -1.1
975,834 + MPMX19_04593 0.15 -1.1
975,834 + MPMX19_04593 0.15 -0.1
975,834 + MPMX19_04593 0.15 -0.1
975,834 + MPMX19_04593 0.15 -1.1
975,834 + MPMX19_04593 0.15 -1.2
975,834 + MPMX19_04593 0.15 -0.1
975,835 - MPMX19_04593 0.15 -1.3
975,835 - MPMX19_04593 0.15 -0.2
975,835 - MPMX19_04593 0.15 -1.9
975,835 - MPMX19_04593 0.15 -0.1
975,835 - MPMX19_04593 0.15 -0.2
975,835 - MPMX19_04593 0.15 -1.7
975,835 - MPMX19_04593 0.15 +0.2
975,835 - MPMX19_04593 0.15 -3.2
975,835 - MPMX19_04593 0.15 -0.4
975,835 - MPMX19_04593 0.15 -0.3
975,835 - MPMX19_04593 0.15 -2.2
975,967 - MPMX19_04593 0.21 -1.2
975,993 + MPMX19_04593 0.22 -0.5
975,993 + MPMX19_04593 0.22 -1.8
975,993 + MPMX19_04593 0.22 -2.2
975,993 + MPMX19_04593 0.22 -0.1
975,993 + MPMX19_04593 0.22 +0.3
975,993 + MPMX19_04593 0.22 +0.6
975,993 + MPMX19_04593 0.22 -0.2
975,993 + MPMX19_04593 0.22 -0.7
975,993 + MPMX19_04593 0.22 +0.4
975,993 + MPMX19_04593 0.22 +0.1
975,994 - MPMX19_04593 0.22 -1.1
975,994 - MPMX19_04593 0.22 +1.0
975,994 - MPMX19_04593 0.22 -0.1
975,994 - MPMX19_04593 0.22 +0.1
975,994 - MPMX19_04593 0.22 -2.1
975,994 - MPMX19_04593 0.22 +0.9
975,994 - MPMX19_04593 0.22 -2.2
975,994 - MPMX19_04593 0.22 -1.1
975,994 - MPMX19_04593 0.22 -0.7
975,994 - MPMX19_04593 0.22 +0.1
975,994 - MPMX19_04593 0.22 +0.3
975,994 - MPMX19_04593 0.22 -1.9
975,994 - MPMX19_04593 0.22 -0.1
975,994 - MPMX19_04593 0.22 -0.1
975,994 - MPMX19_04593 0.22 -0.7
975,994 - MPMX19_04593 0.22 -0.2
975,994 - MPMX19_04593 0.22 -1.1
975,994 - MPMX19_04593 0.22 -0.7
975,994 - MPMX19_04593 0.22 +0.5
975,994 - MPMX19_04593 0.22 -0.6
975,994 - MPMX19_04593 0.22 -0.1
975,994 - MPMX19_04593 0.22 -1.4
975,994 - MPMX19_04593 0.22 -0.8
976,098 + MPMX19_04593 0.26 -1.1
976,098 + MPMX19_04593 0.26 +0.6
976,098 + MPMX19_04593 0.26 +0.2
976,098 + MPMX19_04593 0.26 -0.5
976,188 + MPMX19_04593 0.29 -1.5
976,189 - MPMX19_04593 0.29 -0.7

Or see this region's nucleotide sequence