Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04391

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04390 and MPMX19_04391 are separated by 222 nucleotidesMPMX19_04391 and MPMX19_04392 are separated by 32 nucleotidesMPMX19_04392 and MPMX19_04393 are separated by 75 nucleotides MPMX19_04390: MPMX19_04390 - hypothetical protein, at 755,621 to 756,517 _04390 MPMX19_04391: MPMX19_04391 - Homoserine O-acetyltransferase, at 756,740 to 757,957 _04391 MPMX19_04392: MPMX19_04392 - Bifunctional methionine biosynthesis protein MetXA/MetW, at 757,990 to 758,598 _04392 MPMX19_04393: MPMX19_04393 - hypothetical protein, at 758,674 to 758,943 _04393 Position (kb) 756 757 758Strain fitness (log2 ratio) -2 -1 0 1 2at 756.213 kb on + strand, within MPMX19_04390at 756.213 kb on + strand, within MPMX19_04390at 756.213 kb on + strand, within MPMX19_04390at 756.213 kb on + strand, within MPMX19_04390at 756.214 kb on - strand, within MPMX19_04390at 756.552 kb on + strandat 756.552 kb on + strandat 756.552 kb on + strandat 756.552 kb on + strandat 756.552 kb on + strandat 756.552 kb on + strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.553 kb on - strandat 756.555 kb on + strandat 756.556 kb on - strandat 756.556 kb on - strandat 756.612 kb on + strandat 756.612 kb on + strandat 756.612 kb on + strandat 756.612 kb on + strandat 756.612 kb on + strandat 756.613 kb on - strandat 756.613 kb on - strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.616 kb on + strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.617 kb on - strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.618 kb on + strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.619 kb on - strandat 756.890 kb on + strand, within MPMX19_04391at 756.891 kb on - strand, within MPMX19_04391at 756.899 kb on + strand, within MPMX19_04391at 756.899 kb on + strand, within MPMX19_04391at 756.899 kb on + strand, within MPMX19_04391at 756.899 kb on + strand, within MPMX19_04391at 756.900 kb on - strand, within MPMX19_04391at 757.053 kb on - strand, within MPMX19_04391at 757.137 kb on - strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.538 kb on + strand, within MPMX19_04391at 757.571 kb on + strand, within MPMX19_04391at 757.572 kb on - strand, within MPMX19_04391at 757.572 kb on - strand, within MPMX19_04391at 757.572 kb on - strand, within MPMX19_04391at 757.581 kb on - strand, within MPMX19_04391at 757.622 kb on + strand, within MPMX19_04391at 757.622 kb on + strand, within MPMX19_04391at 757.622 kb on + strand, within MPMX19_04391at 757.622 kb on + strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.649 kb on + strand, within MPMX19_04391at 757.965 kb on + strandat 757.965 kb on + strandat 757.965 kb on + strandat 757.966 kb on - strandat 758.213 kb on - strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.234 kb on - strand, within MPMX19_04392at 758.234 kb on - strand, within MPMX19_04392at 758.234 kb on - strand, within MPMX19_04392at 758.255 kb on + strand, within MPMX19_04392at 758.255 kb on + strand, within MPMX19_04392at 758.440 kb on - strand, within MPMX19_04392at 758.647 kb on + strandat 758.647 kb on + strandat 758.647 kb on + strandat 758.648 kb on - strandat 758.648 kb on - strandat 758.666 kb on + strandat 758.666 kb on + strandat 758.666 kb on + strandat 758.667 kb on - strandat 758.667 kb on - strandat 758.667 kb on - strandat 758.667 kb on - strandat 758.772 kb on + strand, within MPMX19_04393at 758.773 kb on - strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.831 kb on - strand, within MPMX19_04393at 758.945 kb on + strandat 758.945 kb on + strandat 758.946 kb on - strandat 758.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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756,213 + MPMX19_04390 0.66 -1.6
756,213 + MPMX19_04390 0.66 -1.3
756,213 + MPMX19_04390 0.66 -0.9
756,213 + MPMX19_04390 0.66 +0.1
756,214 - MPMX19_04390 0.66 -0.6
756,552 + -0.6
756,552 + +1.0
756,552 + -1.3
756,552 + -0.6
756,552 + -0.6
756,552 + -1.0
756,553 - -0.6
756,553 - +1.0
756,553 - -0.2
756,553 - +0.2
756,553 - +0.7
756,553 - -1.8
756,553 - +1.3
756,553 - +0.3
756,555 + -1.0
756,556 - +0.6
756,556 - -0.8
756,612 + -0.4
756,612 + +0.7
756,612 + -0.3
756,612 + -0.8
756,612 + +0.4
756,613 - -0.2
756,613 - -0.6
756,616 + -2.0
756,616 + -1.8
756,616 + -1.0
756,616 + +0.2
756,616 + -1.0
756,616 + -1.0
756,616 + -0.3
756,616 + -0.6
756,616 + -0.9
756,616 + -0.4
756,616 + +1.0
756,617 - +0.7
756,617 - -1.6
756,617 - -1.3
756,617 - -1.4
756,617 - -0.3
756,617 - +1.0
756,617 - +0.6
756,617 - -0.2
756,617 - -1.0
756,617 - -1.0
756,617 - -0.6
756,618 + +1.0
756,618 + -0.4
756,618 + +1.0
756,618 + -2.3
756,618 + -0.0
756,618 + -1.3
756,618 + -0.0
756,618 + -0.0
756,618 + -1.9
756,618 + -1.3
756,618 + -1.3
756,618 + -0.0
756,618 + -2.2
756,619 - -2.2
756,619 - -0.3
756,619 - -0.8
756,619 - -1.6
756,619 - -1.0
756,619 - -0.0
756,619 - +0.4
756,619 - -2.2
756,619 - -1.3
756,890 + MPMX19_04391 0.12 +0.4
756,891 - MPMX19_04391 0.12 -0.0
756,899 + MPMX19_04391 0.13 -1.3
756,899 + MPMX19_04391 0.13 +1.6
756,899 + MPMX19_04391 0.13 -1.3
756,899 + MPMX19_04391 0.13 +0.4
756,900 - MPMX19_04391 0.13 -0.6
757,053 - MPMX19_04391 0.26 -1.0
757,137 - MPMX19_04391 0.33 -1.0
757,406 + MPMX19_04391 0.55 +0.4
757,406 + MPMX19_04391 0.55 -0.2
757,406 + MPMX19_04391 0.55 -0.6
757,406 + MPMX19_04391 0.55 -1.0
757,406 + MPMX19_04391 0.55 -1.0
757,406 + MPMX19_04391 0.55 -0.0
757,406 + MPMX19_04391 0.55 -2.0
757,407 - MPMX19_04391 0.55 +0.4
757,407 - MPMX19_04391 0.55 -0.6
757,407 - MPMX19_04391 0.55 -1.8
757,407 - MPMX19_04391 0.55 -2.0
757,407 - MPMX19_04391 0.55 +2.0
757,407 - MPMX19_04391 0.55 -1.3
757,407 - MPMX19_04391 0.55 -0.0
757,472 + MPMX19_04391 0.60 +0.2
757,472 + MPMX19_04391 0.60 +0.2
757,472 + MPMX19_04391 0.60 -1.3
757,472 + MPMX19_04391 0.60 -0.0
757,472 + MPMX19_04391 0.60 -1.2
757,472 + MPMX19_04391 0.60 +0.2
757,473 - MPMX19_04391 0.60 -1.0
757,473 - MPMX19_04391 0.60 -0.0
757,473 - MPMX19_04391 0.60 -2.3
757,473 - MPMX19_04391 0.60 -1.0
757,473 - MPMX19_04391 0.60 -0.2
757,538 + MPMX19_04391 0.66 -0.6
757,571 + MPMX19_04391 0.68 -1.2
757,572 - MPMX19_04391 0.68 +0.4
757,572 - MPMX19_04391 0.68 -1.2
757,572 - MPMX19_04391 0.68 -1.0
757,581 - MPMX19_04391 0.69 -0.0
757,622 + MPMX19_04391 0.72 -0.6
757,622 + MPMX19_04391 0.72 -0.6
757,622 + MPMX19_04391 0.72 -1.0
757,622 + MPMX19_04391 0.72 -0.0
757,623 - MPMX19_04391 0.72 -1.0
757,623 - MPMX19_04391 0.72 -0.9
757,623 - MPMX19_04391 0.72 -1.0
757,623 - MPMX19_04391 0.72 -0.6
757,623 - MPMX19_04391 0.72 -1.0
757,628 + MPMX19_04391 0.73 -1.3
757,628 + MPMX19_04391 0.73 +0.8
757,628 + MPMX19_04391 0.73 -0.0
757,628 + MPMX19_04391 0.73 -1.6
757,628 + MPMX19_04391 0.73 +1.0
757,628 + MPMX19_04391 0.73 -1.3
757,628 + MPMX19_04391 0.73 -1.0
757,628 + MPMX19_04391 0.73 -0.6
757,628 + MPMX19_04391 0.73 -0.0
757,629 - MPMX19_04391 0.73 -0.6
757,629 - MPMX19_04391 0.73 -1.6
757,629 - MPMX19_04391 0.73 -1.0
757,629 - MPMX19_04391 0.73 -1.8
757,629 - MPMX19_04391 0.73 -0.8
757,629 - MPMX19_04391 0.73 -0.0
757,629 - MPMX19_04391 0.73 -0.0
757,649 + MPMX19_04391 0.75 -1.0
757,965 + +0.1
757,965 + -0.4
757,965 + -0.4
757,966 - +1.0
758,213 - MPMX19_04392 0.37 +0.7
758,233 + MPMX19_04392 0.40 -0.3
758,233 + MPMX19_04392 0.40 -0.8
758,233 + MPMX19_04392 0.40 -1.0
758,233 + MPMX19_04392 0.40 -0.0
758,234 - MPMX19_04392 0.40 -0.0
758,234 - MPMX19_04392 0.40 +1.0
758,234 - MPMX19_04392 0.40 -0.0
758,255 + MPMX19_04392 0.44 -1.0
758,255 + MPMX19_04392 0.44 -1.3
758,440 - MPMX19_04392 0.74 -0.0
758,647 + -2.2
758,647 + -0.0
758,647 + +0.6
758,648 - -0.3
758,648 - -2.1
758,666 + -2.2
758,666 + -0.6
758,666 + +1.0
758,667 - -0.8
758,667 - -1.7
758,667 - +0.8
758,667 - +0.8
758,772 + MPMX19_04393 0.36 -1.8
758,773 - MPMX19_04393 0.37 +0.4
758,830 + MPMX19_04393 0.58 +0.2
758,830 + MPMX19_04393 0.58 -1.3
758,830 + MPMX19_04393 0.58 -0.4
758,830 + MPMX19_04393 0.58 +0.6
758,831 - MPMX19_04393 0.58 -0.3
758,945 + -0.4
758,945 + +0.4
758,946 - +1.0
758,946 - -2.2

Or see this region's nucleotide sequence