Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04192 and MPMX19_04193 are separated by 281 nucleotides MPMX19_04193 and MPMX19_04194 are separated by 19 nucleotides MPMX19_04194 and MPMX19_04195 are separated by 614 nucleotides
MPMX19_04192: MPMX19_04192 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 525,844 to 526,605
_04192
MPMX19_04193: MPMX19_04193 - hypothetical protein, at 526,887 to 527,288
_04193
MPMX19_04194: MPMX19_04194 - hypothetical protein, at 527,308 to 527,652
_04194
MPMX19_04195: MPMX19_04195 - Sensor histidine kinase RcsC, at 528,267 to 530,489
_04195
Position (kb) 526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 525.929 kb on + strand, within MPMX19_04192 at 525.929 kb on + strand, within MPMX19_04192 at 525.929 kb on + strand, within MPMX19_04192 at 525.929 kb on + strand, within MPMX19_04192 at 525.930 kb on - strand, within MPMX19_04192 at 525.930 kb on - strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.966 kb on - strand, within MPMX19_04192 at 525.966 kb on - strand, within MPMX19_04192 at 525.966 kb on - strand, within MPMX19_04192 at 526.193 kb on + strand, within MPMX19_04192 at 526.193 kb on + strand, within MPMX19_04192 at 526.193 kb on + strand, within MPMX19_04192 at 526.194 kb on - strand, within MPMX19_04192 at 526.194 kb on - strand, within MPMX19_04192 at 526.194 kb on - strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.338 kb on - strand, within MPMX19_04192 at 526.338 kb on - strand, within MPMX19_04192 at 526.338 kb on - strand, within MPMX19_04192 at 526.669 kb on - strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.818 kb on - strand at 526.818 kb on - strand at 526.818 kb on - strand at 526.828 kb on + strand at 526.994 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.371 kb on + strand, within MPMX19_04194 at 527.756 kb on - strand at 527.756 kb on - strand at 527.760 kb on - strand at 527.760 kb on - strand at 527.760 kb on - strand at 527.764 kb on + strand at 527.764 kb on + strand at 527.764 kb on + strand at 527.826 kb on + strand at 527.827 kb on - strand at 527.895 kb on - strand at 527.919 kb on - strand at 527.919 kb on - strand at 527.925 kb on + strand at 527.926 kb on - strand at 527.955 kb on + strand at 527.955 kb on + strand at 527.956 kb on - strand at 527.998 kb on + strand at 527.998 kb on + strand at 527.999 kb on - strand at 527.999 kb on - strand at 527.999 kb on - strand at 527.999 kb on - strand at 528.029 kb on + strand at 528.029 kb on + strand at 528.029 kb on + strand at 528.030 kb on - strand at 528.030 kb on - strand at 528.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 525,929 + MPMX19_04192 0.11 -0.1 525,929 + MPMX19_04192 0.11 -1.1 525,929 + MPMX19_04192 0.11 -0.3 525,929 + MPMX19_04192 0.11 -0.4 525,930 - MPMX19_04192 0.11 -0.4 525,930 - MPMX19_04192 0.11 -2.3 525,965 + MPMX19_04192 0.16 -1.3 525,965 + MPMX19_04192 0.16 +0.5 525,965 + MPMX19_04192 0.16 -0.3 525,965 + MPMX19_04192 0.16 +0.2 525,965 + MPMX19_04192 0.16 -0.4 525,966 - MPMX19_04192 0.16 -1.5 525,966 - MPMX19_04192 0.16 +0.0 525,966 - MPMX19_04192 0.16 +0.6 526,193 + MPMX19_04192 0.46 +0.6 526,193 + MPMX19_04192 0.46 -0.3 526,193 + MPMX19_04192 0.46 +0.6 526,194 - MPMX19_04192 0.46 -1.1 526,194 - MPMX19_04192 0.46 -0.7 526,194 - MPMX19_04192 0.46 -1.0 526,337 + MPMX19_04192 0.65 -0.2 526,337 + MPMX19_04192 0.65 -0.5 526,337 + MPMX19_04192 0.65 -0.3 526,337 + MPMX19_04192 0.65 -0.3 526,337 + MPMX19_04192 0.65 -0.5 526,338 - MPMX19_04192 0.65 +0.5 526,338 - MPMX19_04192 0.65 -1.0 526,338 - MPMX19_04192 0.65 -1.3 526,669 - -0.5 526,779 + +0.8 526,779 + -0.2 526,779 + -1.0 526,779 + -0.5 526,779 + -1.0 526,779 + -1.3 526,779 + +0.6 526,779 + -1.0 526,779 + -1.9 526,779 + -0.5 526,779 + -0.8 526,779 + -0.5 526,780 - -2.0 526,780 - +1.0 526,780 - -0.5 526,780 - -0.1 526,780 - +2.4 526,780 - +3.4 526,780 - -0.4 526,780 - -0.5 526,806 + -0.8 526,806 + -1.0 526,806 + +0.0 526,806 + -0.4 526,806 + -0.7 526,806 + -1.3 526,807 - -1.3 526,807 - -0.5 526,807 - -1.5 526,807 - -0.5 526,807 - +1.5 526,807 - +0.5 526,817 + +0.4 526,817 + +0.3 526,817 + -1.5 526,817 + -0.5 526,817 + -1.5 526,817 + +0.4 526,817 + +1.6 526,817 + +1.0 526,817 + +0.0 526,818 - -0.5 526,818 - -0.2 526,818 - -0.4 526,828 + +0.7 526,994 + MPMX19_04193 0.27 -0.2 527,088 + MPMX19_04193 0.50 +0.7 527,088 + MPMX19_04193 0.50 -0.3 527,088 + MPMX19_04193 0.50 +1.0 527,088 + MPMX19_04193 0.50 -1.3 527,088 + MPMX19_04193 0.50 -0.3 527,088 + MPMX19_04193 0.50 -1.5 527,088 + MPMX19_04193 0.50 -0.2 527,088 + MPMX19_04193 0.50 +0.7 527,088 + MPMX19_04193 0.50 -1.3 527,088 + MPMX19_04193 0.50 -1.0 527,088 + MPMX19_04193 0.50 +1.8 527,088 + MPMX19_04193 0.50 +0.4 527,088 + MPMX19_04193 0.50 +1.2 527,088 + MPMX19_04193 0.50 -1.0 527,088 + MPMX19_04193 0.50 -1.3 527,088 + MPMX19_04193 0.50 +1.8 527,088 + MPMX19_04193 0.50 -0.8 527,088 + MPMX19_04193 0.50 -2.2 527,088 + MPMX19_04193 0.50 +1.8 527,089 - MPMX19_04193 0.50 -0.7 527,089 - MPMX19_04193 0.50 -0.4 527,089 - MPMX19_04193 0.50 +0.0 527,089 - MPMX19_04193 0.50 +0.2 527,089 - MPMX19_04193 0.50 -2.8 527,089 - MPMX19_04193 0.50 -0.4 527,089 - MPMX19_04193 0.50 -0.5 527,089 - MPMX19_04193 0.50 +0.0 527,089 - MPMX19_04193 0.50 -0.8 527,089 - MPMX19_04193 0.50 +0.6 527,089 - MPMX19_04193 0.50 +2.0 527,089 - MPMX19_04193 0.50 -0.8 527,089 - MPMX19_04193 0.50 -2.1 527,371 + MPMX19_04194 0.18 -0.3 527,756 - -0.5 527,756 - +1.2 527,760 - +1.0 527,760 - +0.0 527,760 - -0.5 527,764 + -2.1 527,764 + -1.5 527,764 + +0.7 527,826 + -2.4 527,827 - -0.7 527,895 - +0.3 527,919 - -1.0 527,919 - -0.7 527,925 + +0.0 527,926 - +0.3 527,955 + -0.4 527,955 + -1.8 527,956 - +1.0 527,998 + -1.0 527,998 + -1.3 527,999 - -1.3 527,999 - +0.3 527,999 - -0.4 527,999 - -0.4 528,029 + -2.0 528,029 + -0.6 528,029 + +2.0 528,030 - -1.2 528,030 - -0.4 528,030 - +0.0
Or see this region's nucleotide sequence