Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04162

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04160 and MPMX19_04161 are separated by 58 nucleotidesMPMX19_04161 and MPMX19_04162 are separated by 124 nucleotidesMPMX19_04162 and MPMX19_04163 are separated by 6 nucleotides MPMX19_04160: MPMX19_04160 - hypothetical protein, at 477,004 to 478,191 _04160 MPMX19_04161: MPMX19_04161 - hypothetical protein, at 478,250 to 479,044 _04161 MPMX19_04162: MPMX19_04162 - Transcription-repair-coupling factor, at 479,169 to 482,582 _04162 MPMX19_04163: MPMX19_04163 - hypothetical protein, at 482,589 to 483,812 _04163 Position (kb) 479 480 481 482 483Strain fitness (log2 ratio) -2 -1 0 1 2at 478.189 kb on + strandat 478.189 kb on + strandat 478.190 kb on - strandat 478.190 kb on - strandat 478.190 kb on - strandat 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.343 kb on - strand, within MPMX19_04161at 478.343 kb on - strand, within MPMX19_04161at 478.343 kb on - strand, within MPMX19_04161at 479.061 kb on - strandat 479.061 kb on - strandat 479.072 kb on + strandat 479.072 kb on + strandat 479.072 kb on + strandat 479.073 kb on - strandat 479.073 kb on - strandat 479.073 kb on - strandat 479.101 kb on + strandat 479.101 kb on + strandat 479.102 kb on - strandat 479.102 kb on - strandat 479.150 kb on + strandat 479.150 kb on + strandat 479.150 kb on + strandat 479.150 kb on + strandat 479.246 kb on - strandat 479.246 kb on - strandat 479.607 kb on + strand, within MPMX19_04162at 479.607 kb on + strand, within MPMX19_04162at 479.607 kb on + strand, within MPMX19_04162at 479.607 kb on + strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.958 kb on + strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 480.250 kb on + strand, within MPMX19_04162at 480.443 kb on - strand, within MPMX19_04162at 480.443 kb on - strand, within MPMX19_04162at 480.598 kb on - strand, within MPMX19_04162at 480.598 kb on - strand, within MPMX19_04162at 480.681 kb on + strand, within MPMX19_04162at 480.681 kb on + strand, within MPMX19_04162at 480.681 kb on + strand, within MPMX19_04162at 480.681 kb on + strand, within MPMX19_04162at 480.681 kb on + strand, within MPMX19_04162at 480.681 kb on + strand, within MPMX19_04162at 480.681 kb on + strand, within MPMX19_04162at 480.681 kb on + strand, within MPMX19_04162at 480.682 kb on - strand, within MPMX19_04162at 480.682 kb on - strand, within MPMX19_04162at 480.682 kb on - strand, within MPMX19_04162at 480.682 kb on - strand, within MPMX19_04162at 480.682 kb on - strand, within MPMX19_04162at 480.908 kb on + strand, within MPMX19_04162at 480.908 kb on + strand, within MPMX19_04162at 480.908 kb on + strand, within MPMX19_04162at 480.908 kb on + strand, within MPMX19_04162at 480.908 kb on + strand, within MPMX19_04162at 480.908 kb on + strand, within MPMX19_04162at 480.908 kb on + strand, within MPMX19_04162at 480.909 kb on - strand, within MPMX19_04162at 480.909 kb on - strand, within MPMX19_04162at 481.035 kb on + strand, within MPMX19_04162at 481.466 kb on + strand, within MPMX19_04162at 481.472 kb on + strand, within MPMX19_04162at 481.472 kb on + strand, within MPMX19_04162at 481.473 kb on - strand, within MPMX19_04162at 481.498 kb on + strand, within MPMX19_04162at 481.730 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.872 kb on + strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.873 kb on - strand, within MPMX19_04162at 481.878 kb on + strand, within MPMX19_04162at 481.878 kb on + strand, within MPMX19_04162at 481.878 kb on + strand, within MPMX19_04162at 481.878 kb on + strand, within MPMX19_04162at 481.879 kb on - strand, within MPMX19_04162at 481.879 kb on - strand, within MPMX19_04162at 482.064 kb on + strand, within MPMX19_04162at 482.064 kb on + strand, within MPMX19_04162at 482.064 kb on + strand, within MPMX19_04162at 482.065 kb on - strand, within MPMX19_04162at 482.065 kb on - strand, within MPMX19_04162at 482.065 kb on - strand, within MPMX19_04162at 482.065 kb on - strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.169 kb on + strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.170 kb on - strand, within MPMX19_04162at 482.580 kb on + strandat 482.580 kb on + strandat 482.580 kb on + strandat 482.580 kb on + strandat 482.580 kb on + strandat 482.581 kb on - strandat 482.581 kb on - strandat 482.581 kb on - strandat 482.581 kb on - strandat 482.581 kb on - strandat 482.581 kb on - strandat 483.244 kb on + strand, within MPMX19_04163at 483.244 kb on + strand, within MPMX19_04163at 483.244 kb on + strand, within MPMX19_04163at 483.244 kb on + strand, within MPMX19_04163at 483.244 kb on + strand, within MPMX19_04163at 483.245 kb on - strand, within MPMX19_04163at 483.245 kb on - strand, within MPMX19_04163at 483.307 kb on + strand, within MPMX19_04163at 483.307 kb on + strand, within MPMX19_04163at 483.308 kb on - strand, within MPMX19_04163at 483.308 kb on - strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.355 kb on + strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163at 483.356 kb on - strand, within MPMX19_04163

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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478,189 + -1.5
478,189 + +1.6
478,190 - -0.5
478,190 - -1.8
478,190 - -1.6
478,342 + MPMX19_04161 0.12 -0.8
478,342 + MPMX19_04161 0.12 +0.2
478,342 + MPMX19_04161 0.12 +0.6
478,342 + MPMX19_04161 0.12 +0.2
478,342 + MPMX19_04161 0.12 +1.5
478,343 - MPMX19_04161 0.12 -1.3
478,343 - MPMX19_04161 0.12 +0.7
478,343 - MPMX19_04161 0.12 +0.7
479,061 - +2.0
479,061 - -1.2
479,072 + -0.5
479,072 + -0.5
479,072 + -1.4
479,073 - -0.8
479,073 - -1.3
479,073 - -1.0
479,101 + +0.7
479,101 + +1.0
479,102 - -0.3
479,102 - +0.2
479,150 + +0.3
479,150 + +0.0
479,150 + +0.3
479,150 + -0.8
479,246 - -0.4
479,246 - +2.0
479,607 + MPMX19_04162 0.13 +0.3
479,607 + MPMX19_04162 0.13 -1.8
479,607 + MPMX19_04162 0.13 +1.6
479,607 + MPMX19_04162 0.13 -1.5
479,608 - MPMX19_04162 0.13 +0.5
479,608 - MPMX19_04162 0.13 -0.1
479,608 - MPMX19_04162 0.13 -0.7
479,608 - MPMX19_04162 0.13 +0.0
479,608 - MPMX19_04162 0.13 +0.0
479,649 + MPMX19_04162 0.14 +0.7
479,649 + MPMX19_04162 0.14 -1.5
479,649 + MPMX19_04162 0.14 -1.1
479,649 + MPMX19_04162 0.14 -1.0
479,649 + MPMX19_04162 0.14 +0.3
479,649 + MPMX19_04162 0.14 -0.8
479,650 - MPMX19_04162 0.14 -2.1
479,650 - MPMX19_04162 0.14 +0.3
479,650 - MPMX19_04162 0.14 -2.5
479,650 - MPMX19_04162 0.14 +1.0
479,650 - MPMX19_04162 0.14 -1.0
479,650 - MPMX19_04162 0.14 +0.0
479,784 + MPMX19_04162 0.18 +1.2
479,784 + MPMX19_04162 0.18 +0.6
479,784 + MPMX19_04162 0.18 +0.6
479,784 + MPMX19_04162 0.18 +1.0
479,784 + MPMX19_04162 0.18 +1.9
479,784 + MPMX19_04162 0.18 -0.1
479,784 + MPMX19_04162 0.18 -1.8
479,784 + MPMX19_04162 0.18 +0.6
479,785 - MPMX19_04162 0.18 -1.1
479,785 - MPMX19_04162 0.18 +1.0
479,785 - MPMX19_04162 0.18 +2.0
479,785 - MPMX19_04162 0.18 -0.1
479,785 - MPMX19_04162 0.18 +0.0
479,958 + MPMX19_04162 0.23 -0.2
479,959 - MPMX19_04162 0.23 +0.5
479,959 - MPMX19_04162 0.23 -1.5
479,959 - MPMX19_04162 0.23 +0.7
479,959 - MPMX19_04162 0.23 -0.8
479,959 - MPMX19_04162 0.23 -1.8
479,959 - MPMX19_04162 0.23 +2.0
479,959 - MPMX19_04162 0.23 -1.5
479,959 - MPMX19_04162 0.23 -1.5
480,250 + MPMX19_04162 0.32 -0.4
480,443 - MPMX19_04162 0.37 +0.2
480,443 - MPMX19_04162 0.37 +1.0
480,598 - MPMX19_04162 0.42 +0.3
480,598 - MPMX19_04162 0.42 -0.8
480,681 + MPMX19_04162 0.44 -1.3
480,681 + MPMX19_04162 0.44 +1.2
480,681 + MPMX19_04162 0.44 -1.0
480,681 + MPMX19_04162 0.44 -1.0
480,681 + MPMX19_04162 0.44 -0.3
480,681 + MPMX19_04162 0.44 -1.0
480,681 + MPMX19_04162 0.44 -0.8
480,681 + MPMX19_04162 0.44 -0.3
480,682 - MPMX19_04162 0.44 -0.3
480,682 - MPMX19_04162 0.44 +0.6
480,682 - MPMX19_04162 0.44 +0.0
480,682 - MPMX19_04162 0.44 +0.3
480,682 - MPMX19_04162 0.44 +0.4
480,908 + MPMX19_04162 0.51 +1.0
480,908 + MPMX19_04162 0.51 -1.2
480,908 + MPMX19_04162 0.51 +0.0
480,908 + MPMX19_04162 0.51 +1.0
480,908 + MPMX19_04162 0.51 -0.4
480,908 + MPMX19_04162 0.51 -1.0
480,908 + MPMX19_04162 0.51 +0.0
480,909 - MPMX19_04162 0.51 -1.1
480,909 - MPMX19_04162 0.51 -0.1
481,035 + MPMX19_04162 0.55 +0.5
481,466 + MPMX19_04162 0.67 -0.5
481,472 + MPMX19_04162 0.67 -1.4
481,472 + MPMX19_04162 0.67 -1.1
481,473 - MPMX19_04162 0.67 -1.1
481,498 + MPMX19_04162 0.68 -0.2
481,730 + MPMX19_04162 0.75 -1.5
481,872 + MPMX19_04162 0.79 +0.3
481,872 + MPMX19_04162 0.79 -2.0
481,872 + MPMX19_04162 0.79 -0.7
481,872 + MPMX19_04162 0.79 -1.3
481,872 + MPMX19_04162 0.79 -0.8
481,872 + MPMX19_04162 0.79 +1.3
481,872 + MPMX19_04162 0.79 +0.5
481,872 + MPMX19_04162 0.79 -0.4
481,873 - MPMX19_04162 0.79 -0.5
481,873 - MPMX19_04162 0.79 -1.0
481,873 - MPMX19_04162 0.79 -1.0
481,873 - MPMX19_04162 0.79 -1.3
481,873 - MPMX19_04162 0.79 -0.8
481,873 - MPMX19_04162 0.79 +0.0
481,873 - MPMX19_04162 0.79 -0.5
481,873 - MPMX19_04162 0.79 -0.3
481,873 - MPMX19_04162 0.79 +0.2
481,873 - MPMX19_04162 0.79 +0.5
481,878 + MPMX19_04162 0.79 +0.0
481,878 + MPMX19_04162 0.79 +0.3
481,878 + MPMX19_04162 0.79 -1.8
481,878 + MPMX19_04162 0.79 +0.8
481,879 - MPMX19_04162 0.79 -0.6
481,879 - MPMX19_04162 0.79 +0.3
482,064 + MPMX19_04162 0.85 -0.5
482,064 + MPMX19_04162 0.85 +0.6
482,064 + MPMX19_04162 0.85 -1.5
482,065 - MPMX19_04162 0.85 +2.0
482,065 - MPMX19_04162 0.85 -1.3
482,065 - MPMX19_04162 0.85 -1.0
482,065 - MPMX19_04162 0.85 +0.7
482,169 + MPMX19_04162 0.88 +0.1
482,169 + MPMX19_04162 0.88 +0.0
482,169 + MPMX19_04162 0.88 -1.5
482,169 + MPMX19_04162 0.88 -0.3
482,169 + MPMX19_04162 0.88 +0.5
482,169 + MPMX19_04162 0.88 -0.2
482,169 + MPMX19_04162 0.88 -1.0
482,169 + MPMX19_04162 0.88 +1.0
482,169 + MPMX19_04162 0.88 +0.6
482,169 + MPMX19_04162 0.88 -1.3
482,169 + MPMX19_04162 0.88 +0.8
482,169 + MPMX19_04162 0.88 +0.5
482,170 - MPMX19_04162 0.88 +1.5
482,170 - MPMX19_04162 0.88 -0.3
482,170 - MPMX19_04162 0.88 -0.5
482,170 - MPMX19_04162 0.88 -0.5
482,170 - MPMX19_04162 0.88 +0.5
482,170 - MPMX19_04162 0.88 +0.3
482,170 - MPMX19_04162 0.88 +0.5
482,170 - MPMX19_04162 0.88 -1.4
482,170 - MPMX19_04162 0.88 +0.3
482,170 - MPMX19_04162 0.88 +0.5
482,170 - MPMX19_04162 0.88 -1.1
482,580 + -1.0
482,580 + -1.3
482,580 + -0.5
482,580 + -1.1
482,580 + +1.0
482,581 - -0.5
482,581 - -0.4
482,581 - +0.5
482,581 - +0.0
482,581 - +0.5
482,581 - -0.4
483,244 + MPMX19_04163 0.54 -2.4
483,244 + MPMX19_04163 0.54 +0.5
483,244 + MPMX19_04163 0.54 +0.0
483,244 + MPMX19_04163 0.54 -1.1
483,244 + MPMX19_04163 0.54 -1.9
483,245 - MPMX19_04163 0.54 -1.9
483,245 - MPMX19_04163 0.54 -0.7
483,307 + MPMX19_04163 0.59 -2.1
483,307 + MPMX19_04163 0.59 +0.0
483,308 - MPMX19_04163 0.59 -1.5
483,308 - MPMX19_04163 0.59 -1.5
483,355 + MPMX19_04163 0.63 -0.5
483,355 + MPMX19_04163 0.63 +1.6
483,355 + MPMX19_04163 0.63 +0.9
483,355 + MPMX19_04163 0.63 -0.2
483,355 + MPMX19_04163 0.63 +1.0
483,355 + MPMX19_04163 0.63 -0.5
483,355 + MPMX19_04163 0.63 -0.8
483,355 + MPMX19_04163 0.63 +0.0
483,355 + MPMX19_04163 0.63 -1.1
483,355 + MPMX19_04163 0.63 -0.5
483,355 + MPMX19_04163 0.63 -1.8
483,355 + MPMX19_04163 0.63 -0.5
483,356 - MPMX19_04163 0.63 +0.7
483,356 - MPMX19_04163 0.63 +0.5
483,356 - MPMX19_04163 0.63 +1.4
483,356 - MPMX19_04163 0.63 +0.0
483,356 - MPMX19_04163 0.63 +0.0
483,356 - MPMX19_04163 0.63 -0.1
483,356 - MPMX19_04163 0.63 -1.0
483,356 - MPMX19_04163 0.63 +0.3
483,356 - MPMX19_04163 0.63 +1.2

Or see this region's nucleotide sequence