Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04014

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04012 and MPMX19_04013 are separated by 84 nucleotidesMPMX19_04013 and MPMX19_04014 are separated by 208 nucleotidesMPMX19_04014 and MPMX19_04015 are separated by 109 nucleotides MPMX19_04012: MPMX19_04012 - hypothetical protein, at 308,477 to 308,902 _04012 MPMX19_04013: MPMX19_04013 - hypothetical protein, at 308,987 to 309,466 _04013 MPMX19_04014: MPMX19_04014 - hypothetical protein, at 309,675 to 310,625 _04014 MPMX19_04015: MPMX19_04015 - Oligopeptide transport ATP-binding protein OppF, at 310,735 to 311,736 _04015 Position (kb) 309 310 311Strain fitness (log2 ratio) -3 -2 -1 0 1at 308.897 kb on + strandat 308.897 kb on + strandat 308.898 kb on - strandat 308.898 kb on - strandat 308.909 kb on + strandat 308.909 kb on + strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 308.910 kb on - strandat 309.053 kb on + strand, within MPMX19_04013at 309.053 kb on + strand, within MPMX19_04013at 309.053 kb on + strand, within MPMX19_04013at 309.053 kb on + strand, within MPMX19_04013at 309.054 kb on - strand, within MPMX19_04013at 309.054 kb on - strand, within MPMX19_04013at 309.054 kb on - strand, within MPMX19_04013at 309.260 kb on + strand, within MPMX19_04013at 309.261 kb on - strand, within MPMX19_04013at 309.261 kb on - strand, within MPMX19_04013at 309.525 kb on + strandat 309.652 kb on - strandat 309.701 kb on + strandat 309.786 kb on - strand, within MPMX19_04014at 309.786 kb on - strand, within MPMX19_04014at 309.825 kb on - strand, within MPMX19_04014at 309.825 kb on - strand, within MPMX19_04014at 309.862 kb on + strand, within MPMX19_04014at 309.863 kb on - strand, within MPMX19_04014at 309.863 kb on - strand, within MPMX19_04014at 309.896 kb on + strand, within MPMX19_04014at 309.896 kb on + strand, within MPMX19_04014at 309.896 kb on + strand, within MPMX19_04014at 309.900 kb on + strand, within MPMX19_04014at 309.900 kb on + strand, within MPMX19_04014at 309.901 kb on - strand, within MPMX19_04014at 309.903 kb on - strand, within MPMX19_04014at 309.945 kb on + strand, within MPMX19_04014at 309.945 kb on + strand, within MPMX19_04014at 309.983 kb on + strand, within MPMX19_04014at 309.985 kb on + strand, within MPMX19_04014at 309.985 kb on + strand, within MPMX19_04014at 309.986 kb on - strand, within MPMX19_04014at 309.986 kb on - strand, within MPMX19_04014at 310.077 kb on - strand, within MPMX19_04014at 310.103 kb on - strand, within MPMX19_04014at 310.103 kb on - strand, within MPMX19_04014at 310.166 kb on + strand, within MPMX19_04014at 310.167 kb on - strand, within MPMX19_04014at 310.372 kb on + strand, within MPMX19_04014at 310.407 kb on + strand, within MPMX19_04014at 310.407 kb on + strand, within MPMX19_04014at 310.407 kb on + strand, within MPMX19_04014at 310.407 kb on + strand, within MPMX19_04014at 310.408 kb on - strand, within MPMX19_04014at 310.408 kb on - strand, within MPMX19_04014at 310.408 kb on - strand, within MPMX19_04014at 310.408 kb on - strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.411 kb on + strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.412 kb on - strand, within MPMX19_04014at 310.416 kb on + strand, within MPMX19_04014at 310.416 kb on + strand, within MPMX19_04014at 310.416 kb on + strand, within MPMX19_04014at 310.416 kb on + strand, within MPMX19_04014at 310.417 kb on - strand, within MPMX19_04014at 310.417 kb on - strand, within MPMX19_04014at 310.445 kb on + strand, within MPMX19_04014at 310.498 kb on + strand, within MPMX19_04014at 310.499 kb on - strand, within MPMX19_04014at 310.561 kb on + strandat 310.574 kb on + strandat 310.639 kb on + strandat 310.714 kb on + strandat 310.717 kb on + strandat 310.718 kb on - strandat 310.718 kb on - strandat 310.786 kb on + strandat 310.787 kb on - strandat 310.967 kb on + strand, within MPMX19_04015at 310.967 kb on + strand, within MPMX19_04015at 310.967 kb on + strand, within MPMX19_04015at 310.967 kb on + strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.412 kb on - strand, within MPMX19_04015at 311.412 kb on - strand, within MPMX19_04015at 311.412 kb on - strand, within MPMX19_04015

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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308,897 + -1.3
308,897 + -0.4
308,898 - -1.6
308,898 - -1.3
308,909 + -1.8
308,909 + -0.2
308,910 - -0.0
308,910 - -0.6
308,910 - +1.0
308,910 - -1.3
308,910 - +0.1
308,910 - +0.6
308,910 - -0.4
308,910 - -1.6
308,910 - -0.3
308,910 - +1.0
308,910 - -0.7
308,910 - -2.3
308,910 - -1.2
309,053 + MPMX19_04013 0.14 -2.1
309,053 + MPMX19_04013 0.14 +1.0
309,053 + MPMX19_04013 0.14 -1.8
309,053 + MPMX19_04013 0.14 -1.5
309,054 - MPMX19_04013 0.14 -1.0
309,054 - MPMX19_04013 0.14 -0.8
309,054 - MPMX19_04013 0.14 +0.2
309,260 + MPMX19_04013 0.57 +0.5
309,261 - MPMX19_04013 0.57 -0.6
309,261 - MPMX19_04013 0.57 -1.6
309,525 + -0.8
309,652 - -0.1
309,701 + -0.9
309,786 - MPMX19_04014 0.12 -0.3
309,786 - MPMX19_04014 0.12 -0.0
309,825 - MPMX19_04014 0.16 -1.6
309,825 - MPMX19_04014 0.16 -1.0
309,862 + MPMX19_04014 0.20 -1.1
309,863 - MPMX19_04014 0.20 -1.4
309,863 - MPMX19_04014 0.20 -2.5
309,896 + MPMX19_04014 0.23 -1.6
309,896 + MPMX19_04014 0.23 -1.6
309,896 + MPMX19_04014 0.23 -0.8
309,900 + MPMX19_04014 0.24 -1.4
309,900 + MPMX19_04014 0.24 -1.3
309,901 - MPMX19_04014 0.24 -0.8
309,903 - MPMX19_04014 0.24 -0.4
309,945 + MPMX19_04014 0.28 -1.3
309,945 + MPMX19_04014 0.28 -1.0
309,983 + MPMX19_04014 0.32 +0.6
309,985 + MPMX19_04014 0.33 -0.8
309,985 + MPMX19_04014 0.33 -0.6
309,986 - MPMX19_04014 0.33 -0.6
309,986 - MPMX19_04014 0.33 -0.2
310,077 - MPMX19_04014 0.42 -1.0
310,103 - MPMX19_04014 0.45 -1.3
310,103 - MPMX19_04014 0.45 -0.6
310,166 + MPMX19_04014 0.52 -0.8
310,167 - MPMX19_04014 0.52 -2.0
310,372 + MPMX19_04014 0.73 -0.3
310,407 + MPMX19_04014 0.77 -1.0
310,407 + MPMX19_04014 0.77 -1.2
310,407 + MPMX19_04014 0.77 -0.8
310,407 + MPMX19_04014 0.77 -0.2
310,408 - MPMX19_04014 0.77 -2.2
310,408 - MPMX19_04014 0.77 +0.6
310,408 - MPMX19_04014 0.77 -1.8
310,408 - MPMX19_04014 0.77 -1.2
310,411 + MPMX19_04014 0.77 -0.0
310,411 + MPMX19_04014 0.77 -0.8
310,411 + MPMX19_04014 0.77 -0.3
310,411 + MPMX19_04014 0.77 +0.4
310,411 + MPMX19_04014 0.77 +0.4
310,411 + MPMX19_04014 0.77 -0.4
310,411 + MPMX19_04014 0.77 +0.1
310,411 + MPMX19_04014 0.77 +1.0
310,411 + MPMX19_04014 0.77 +0.4
310,411 + MPMX19_04014 0.77 -1.0
310,411 + MPMX19_04014 0.77 -1.2
310,412 - MPMX19_04014 0.77 -0.8
310,412 - MPMX19_04014 0.77 +1.0
310,412 - MPMX19_04014 0.77 -1.9
310,412 - MPMX19_04014 0.77 -0.0
310,412 - MPMX19_04014 0.77 -0.4
310,412 - MPMX19_04014 0.77 -0.4
310,412 - MPMX19_04014 0.77 -0.4
310,412 - MPMX19_04014 0.77 +1.4
310,412 - MPMX19_04014 0.77 +1.0
310,412 - MPMX19_04014 0.77 -0.0
310,412 - MPMX19_04014 0.77 -0.7
310,416 + MPMX19_04014 0.78 -0.9
310,416 + MPMX19_04014 0.78 -0.3
310,416 + MPMX19_04014 0.78 -1.3
310,416 + MPMX19_04014 0.78 -2.2
310,417 - MPMX19_04014 0.78 -1.7
310,417 - MPMX19_04014 0.78 -1.7
310,445 + MPMX19_04014 0.81 -2.5
310,498 + MPMX19_04014 0.87 -1.6
310,499 - MPMX19_04014 0.87 -1.7
310,561 + -0.5
310,574 + -1.0
310,639 + +0.8
310,714 + -0.3
310,717 + -2.0
310,718 - -0.6
310,718 - -0.8
310,786 + -1.3
310,787 - +1.6
310,967 + MPMX19_04015 0.23 -1.3
310,967 + MPMX19_04015 0.23 -2.0
310,967 + MPMX19_04015 0.23 -0.9
310,967 + MPMX19_04015 0.23 -1.3
310,968 - MPMX19_04015 0.23 -2.8
310,968 - MPMX19_04015 0.23 +0.5
310,968 - MPMX19_04015 0.23 +0.6
310,968 - MPMX19_04015 0.23 +0.4
310,968 - MPMX19_04015 0.23 -0.2
310,968 - MPMX19_04015 0.23 +1.2
310,968 - MPMX19_04015 0.23 +0.2
310,968 - MPMX19_04015 0.23 +0.2
310,989 - MPMX19_04015 0.25 -1.3
310,989 - MPMX19_04015 0.25 -0.7
310,989 - MPMX19_04015 0.25 -0.6
310,989 - MPMX19_04015 0.25 -1.2
311,030 + MPMX19_04015 0.29 -1.2
311,030 + MPMX19_04015 0.29 -0.6
311,030 + MPMX19_04015 0.29 +1.0
311,030 + MPMX19_04015 0.29 -0.2
311,030 + MPMX19_04015 0.29 -0.3
311,030 + MPMX19_04015 0.29 -0.0
311,030 + MPMX19_04015 0.29 -0.2
311,030 + MPMX19_04015 0.29 +0.6
311,030 + MPMX19_04015 0.29 +0.2
311,030 + MPMX19_04015 0.29 +0.4
311,030 + MPMX19_04015 0.29 -1.0
311,030 + MPMX19_04015 0.29 +1.4
311,030 + MPMX19_04015 0.29 -0.1
311,030 + MPMX19_04015 0.29 +0.6
311,030 + MPMX19_04015 0.29 -2.3
311,030 + MPMX19_04015 0.29 +1.7
311,030 + MPMX19_04015 0.29 +0.1
311,030 + MPMX19_04015 0.29 +1.4
311,030 + MPMX19_04015 0.29 +1.6
311,030 + MPMX19_04015 0.29 +1.3
311,030 + MPMX19_04015 0.29 -0.8
311,031 - MPMX19_04015 0.30 +0.2
311,031 - MPMX19_04015 0.30 -0.0
311,031 - MPMX19_04015 0.30 -0.8
311,031 - MPMX19_04015 0.30 -1.0
311,031 - MPMX19_04015 0.30 -0.3
311,031 - MPMX19_04015 0.30 -1.0
311,031 - MPMX19_04015 0.30 -0.6
311,031 - MPMX19_04015 0.30 +1.0
311,031 - MPMX19_04015 0.30 -1.1
311,031 - MPMX19_04015 0.30 -0.3
311,031 - MPMX19_04015 0.30 -0.3
311,031 - MPMX19_04015 0.30 +0.7
311,031 - MPMX19_04015 0.30 -0.3
311,031 - MPMX19_04015 0.30 -0.1
311,057 + MPMX19_04015 0.32 -0.2
311,057 + MPMX19_04015 0.32 +1.7
311,057 + MPMX19_04015 0.32 +1.0
311,057 + MPMX19_04015 0.32 +1.6
311,058 - MPMX19_04015 0.32 +0.1
311,058 - MPMX19_04015 0.32 -0.6
311,058 - MPMX19_04015 0.32 -0.2
311,058 - MPMX19_04015 0.32 +1.4
311,058 - MPMX19_04015 0.32 -0.6
311,058 - MPMX19_04015 0.32 +0.4
311,411 + MPMX19_04015 0.67 +1.0
311,411 + MPMX19_04015 0.67 +0.2
311,411 + MPMX19_04015 0.67 -0.6
311,411 + MPMX19_04015 0.67 -2.0
311,411 + MPMX19_04015 0.67 -1.0
311,412 - MPMX19_04015 0.68 -0.0
311,412 - MPMX19_04015 0.68 -0.8
311,412 - MPMX19_04015 0.68 -0.8

Or see this region's nucleotide sequence