Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03874

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03873 and MPMX19_03874 are separated by 28 nucleotidesMPMX19_03874 and MPMX19_03875 are separated by 178 nucleotides MPMX19_03873: MPMX19_03873 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 120,105 to 121,412 _03873 MPMX19_03874: MPMX19_03874 - hypothetical protein, at 121,441 to 121,893 _03874 MPMX19_03875: MPMX19_03875 - hypothetical protein, at 122,072 to 123,238 _03875 Position (kb) 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 120.462 kb on + strand, within MPMX19_03873at 120.462 kb on + strand, within MPMX19_03873at 120.462 kb on + strand, within MPMX19_03873at 120.773 kb on + strand, within MPMX19_03873at 121.071 kb on + strand, within MPMX19_03873at 121.071 kb on + strand, within MPMX19_03873at 121.072 kb on - strand, within MPMX19_03873at 121.072 kb on - strand, within MPMX19_03873at 121.072 kb on - strand, within MPMX19_03873at 121.072 kb on - strand, within MPMX19_03873at 121.072 kb on - strand, within MPMX19_03873at 121.565 kb on + strand, within MPMX19_03874at 121.565 kb on + strand, within MPMX19_03874at 121.565 kb on + strand, within MPMX19_03874at 121.566 kb on - strand, within MPMX19_03874at 121.577 kb on + strand, within MPMX19_03874at 121.577 kb on + strand, within MPMX19_03874at 121.577 kb on + strand, within MPMX19_03874at 121.577 kb on + strand, within MPMX19_03874at 121.578 kb on - strand, within MPMX19_03874at 121.578 kb on - strand, within MPMX19_03874at 121.727 kb on + strand, within MPMX19_03874at 121.727 kb on + strand, within MPMX19_03874at 121.727 kb on + strand, within MPMX19_03874at 121.728 kb on - strand, within MPMX19_03874at 121.803 kb on + strand, within MPMX19_03874at 121.970 kb on - strandat 122.055 kb on + strandat 122.180 kb on - strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.181 kb on + strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.182 kb on - strandat 122.524 kb on + strand, within MPMX19_03875at 122.525 kb on - strand, within MPMX19_03875at 122.525 kb on - strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.587 kb on + strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.588 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.833 kb on - strand, within MPMX19_03875at 122.859 kb on + strand, within MPMX19_03875at 122.859 kb on + strand, within MPMX19_03875at 122.860 kb on - strand, within MPMX19_03875

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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120,462 + MPMX19_03873 0.27 +0.7
120,462 + MPMX19_03873 0.27 -0.5
120,462 + MPMX19_03873 0.27 +0.4
120,773 + MPMX19_03873 0.51 +1.9
121,071 + MPMX19_03873 0.74 -0.7
121,071 + MPMX19_03873 0.74 +0.2
121,072 - MPMX19_03873 0.74 -1.1
121,072 - MPMX19_03873 0.74 +0.2
121,072 - MPMX19_03873 0.74 +0.2
121,072 - MPMX19_03873 0.74 -0.1
121,072 - MPMX19_03873 0.74 +0.3
121,565 + MPMX19_03874 0.27 -0.4
121,565 + MPMX19_03874 0.27 -1.1
121,565 + MPMX19_03874 0.27 -1.5
121,566 - MPMX19_03874 0.28 -1.5
121,577 + MPMX19_03874 0.30 -1.5
121,577 + MPMX19_03874 0.30 -1.7
121,577 + MPMX19_03874 0.30 +0.5
121,577 + MPMX19_03874 0.30 -0.7
121,578 - MPMX19_03874 0.30 -1.4
121,578 - MPMX19_03874 0.30 -0.3
121,727 + MPMX19_03874 0.63 +1.4
121,727 + MPMX19_03874 0.63 -1.7
121,727 + MPMX19_03874 0.63 -0.7
121,728 - MPMX19_03874 0.63 +0.3
121,803 + MPMX19_03874 0.80 -1.7
121,970 - -0.3
122,055 + -1.4
122,180 - -0.9
122,181 + +0.9
122,181 + -1.3
122,181 + -1.1
122,181 + -0.7
122,181 + +0.5
122,181 + -0.1
122,181 + -0.6
122,181 + -1.1
122,182 - -0.5
122,182 - -0.1
122,182 - -0.2
122,182 - -2.1
122,182 - -2.4
122,182 - -0.7
122,182 - -0.8
122,182 - +0.3
122,182 - -0.1
122,182 - -2.5
122,182 - -1.4
122,182 - +0.2
122,182 - -0.1
122,524 + MPMX19_03875 0.39 +0.7
122,525 - MPMX19_03875 0.39 +1.3
122,525 - MPMX19_03875 0.39 +0.3
122,587 + MPMX19_03875 0.44 +0.9
122,587 + MPMX19_03875 0.44 -0.5
122,587 + MPMX19_03875 0.44 -1.4
122,587 + MPMX19_03875 0.44 -1.4
122,587 + MPMX19_03875 0.44 -0.2
122,588 - MPMX19_03875 0.44 -0.1
122,588 - MPMX19_03875 0.44 -0.7
122,588 - MPMX19_03875 0.44 -1.8
122,588 - MPMX19_03875 0.44 -0.2
122,588 - MPMX19_03875 0.44 -0.4
122,588 - MPMX19_03875 0.44 -0.5
122,588 - MPMX19_03875 0.44 +0.9
122,588 - MPMX19_03875 0.44 -0.5
122,833 - MPMX19_03875 0.65 -2.0
122,833 - MPMX19_03875 0.65 -1.2
122,833 - MPMX19_03875 0.65 +0.9
122,833 - MPMX19_03875 0.65 +0.2
122,833 - MPMX19_03875 0.65 -0.8
122,833 - MPMX19_03875 0.65 -0.1
122,833 - MPMX19_03875 0.65 -1.4
122,859 + MPMX19_03875 0.67 +0.3
122,859 + MPMX19_03875 0.67 -0.8
122,860 - MPMX19_03875 0.68 +0.2

Or see this region's nucleotide sequence