Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03851 and MPMX19_03852 are separated by 121 nucleotides MPMX19_03852 and MPMX19_03853 are separated by 156 nucleotides MPMX19_03853 and MPMX19_03854 are separated by 300 nucleotides
MPMX19_03851: MPMX19_03851 - hypothetical protein, at 94,107 to 95,192
_03851
MPMX19_03852: MPMX19_03852 - 4-alpha-glucanotransferase, at 95,314 to 97,503
_03852
MPMX19_03853: MPMX19_03853 - tRNA-Gln, at 97,660 to 97,733
_03853
MPMX19_03854: MPMX19_03854 - hypothetical protein, at 98,034 to 99,077
_03854
Position (kb) 95
96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.502 kb on + strand, within MPMX19_03851 at 94.502 kb on + strand, within MPMX19_03851 at 94.503 kb on - strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.527 kb on + strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 94.528 kb on - strand, within MPMX19_03851 at 95.226 kb on + strand at 95.226 kb on + strand at 95.226 kb on + strand at 95.226 kb on + strand at 95.226 kb on + strand at 95.226 kb on + strand at 95.227 kb on - strand at 95.227 kb on - strand at 95.227 kb on - strand at 95.227 kb on - strand at 95.272 kb on + strand at 95.273 kb on - strand at 95.273 kb on - strand at 95.273 kb on - strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.362 kb on + strand at 95.362 kb on + strand at 95.363 kb on - strand at 95.363 kb on - strand at 95.363 kb on - strand at 95.363 kb on - strand at 95.475 kb on + strand at 95.475 kb on + strand at 95.475 kb on + strand at 95.475 kb on + strand at 95.476 kb on - strand at 95.476 kb on - strand at 95.689 kb on + strand, within MPMX19_03852 at 95.690 kb on - strand, within MPMX19_03852 at 95.690 kb on - strand, within MPMX19_03852 at 95.740 kb on + strand, within MPMX19_03852 at 95.741 kb on - strand, within MPMX19_03852 at 95.741 kb on - strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.884 kb on + strand, within MPMX19_03852 at 95.885 kb on - strand, within MPMX19_03852 at 95.885 kb on - strand, within MPMX19_03852 at 95.885 kb on - strand, within MPMX19_03852 at 95.885 kb on - strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.070 kb on + strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.071 kb on - strand, within MPMX19_03852 at 96.187 kb on + strand, within MPMX19_03852 at 96.187 kb on + strand, within MPMX19_03852 at 96.188 kb on - strand, within MPMX19_03852 at 96.281 kb on - strand, within MPMX19_03852 at 96.553 kb on + strand, within MPMX19_03852 at 96.554 kb on - strand, within MPMX19_03852 at 96.554 kb on - strand, within MPMX19_03852 at 96.554 kb on - strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.841 kb on + strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.842 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.851 kb on - strand, within MPMX19_03852 at 96.983 kb on - strand, within MPMX19_03852 at 96.994 kb on + strand, within MPMX19_03852 at 96.995 kb on - strand, within MPMX19_03852 at 96.995 kb on - strand, within MPMX19_03852 at 96.995 kb on - strand, within MPMX19_03852 at 96.995 kb on - strand, within MPMX19_03852 at 97.039 kb on + strand, within MPMX19_03852 at 97.243 kb on + strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.797 kb on - strand at 97.797 kb on - strand at 97.849 kb on + strand at 97.850 kb on - strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.020 kb on - strand at 98.020 kb on - strand at 98.020 kb on - strand at 98.020 kb on - strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.235 kb on + strand, within MPMX19_03854 at 98.235 kb on + strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.440 kb on + strand, within MPMX19_03854 at 98.440 kb on + strand, within MPMX19_03854 at 98.440 kb on + strand, within MPMX19_03854 at 98.441 kb on - strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.459 kb on - strand, within MPMX19_03854 at 98.459 kb on - strand, within MPMX19_03854
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 94,502 + MPMX19_03851 0.36 -0.5 94,502 + MPMX19_03851 0.36 -0.7 94,503 - MPMX19_03851 0.36 +0.9 94,527 + MPMX19_03851 0.39 -1.1 94,527 + MPMX19_03851 0.39 -0.7 94,527 + MPMX19_03851 0.39 -1.7 94,527 + MPMX19_03851 0.39 -0.6 94,527 + MPMX19_03851 0.39 -1.1 94,527 + MPMX19_03851 0.39 +0.9 94,527 + MPMX19_03851 0.39 -0.7 94,527 + MPMX19_03851 0.39 -0.9 94,528 - MPMX19_03851 0.39 -0.3 94,528 - MPMX19_03851 0.39 -0.1 94,528 - MPMX19_03851 0.39 +1.7 94,528 - MPMX19_03851 0.39 -0.1 94,528 - MPMX19_03851 0.39 -0.1 95,226 + +1.2 95,226 + -0.9 95,226 + -0.4 95,226 + -0.1 95,226 + -0.7 95,226 + +0.9 95,227 - -1.2 95,227 - -0.6 95,227 - -0.9 95,227 - -1.7 95,272 + -0.7 95,273 - -2.2 95,273 - +0.6 95,273 - +0.5 95,293 + -0.5 95,293 + -1.2 95,293 + -1.4 95,293 + +0.2 95,293 + -0.4 95,293 + -0.3 95,294 - +0.3 95,294 - +0.2 95,294 - -0.1 95,294 - +0.5 95,294 - -0.7 95,294 - +0.1 95,294 - -1.7 95,294 - -1.4 95,294 - +0.4 95,294 - +0.5 95,294 - -0.4 95,362 + -0.1 95,362 + -0.1 95,363 - -0.7 95,363 - +0.9 95,363 - -1.4 95,363 - +0.1 95,475 + +0.3 95,475 + -0.5 95,475 + -0.3 95,475 + -0.4 95,476 - +0.4 95,476 - +0.3 95,689 + MPMX19_03852 0.17 -0.1 95,690 - MPMX19_03852 0.17 +1.7 95,690 - MPMX19_03852 0.17 +0.9 95,740 + MPMX19_03852 0.19 +0.1 95,741 - MPMX19_03852 0.19 -0.1 95,741 - MPMX19_03852 0.19 +0.2 95,884 + MPMX19_03852 0.26 +1.4 95,884 + MPMX19_03852 0.26 +0.1 95,884 + MPMX19_03852 0.26 -0.4 95,884 + MPMX19_03852 0.26 +0.1 95,884 + MPMX19_03852 0.26 -0.5 95,884 + MPMX19_03852 0.26 -0.1 95,884 + MPMX19_03852 0.26 -0.5 95,884 + MPMX19_03852 0.26 -2.1 95,885 - MPMX19_03852 0.26 -1.3 95,885 - MPMX19_03852 0.26 -0.7 95,885 - MPMX19_03852 0.26 +0.4 95,885 - MPMX19_03852 0.26 -0.9 96,070 + MPMX19_03852 0.35 -2.5 96,070 + MPMX19_03852 0.35 +0.3 96,070 + MPMX19_03852 0.35 -1.9 96,070 + MPMX19_03852 0.35 +0.9 96,070 + MPMX19_03852 0.35 -1.7 96,070 + MPMX19_03852 0.35 -1.1 96,070 + MPMX19_03852 0.35 +0.2 96,070 + MPMX19_03852 0.35 +0.9 96,071 - MPMX19_03852 0.35 +0.9 96,071 - MPMX19_03852 0.35 -0.5 96,071 - MPMX19_03852 0.35 -0.1 96,071 - MPMX19_03852 0.35 +0.5 96,071 - MPMX19_03852 0.35 -1.7 96,071 - MPMX19_03852 0.35 +0.9 96,071 - MPMX19_03852 0.35 -0.3 96,071 - MPMX19_03852 0.35 -1.1 96,071 - MPMX19_03852 0.35 +0.0 96,071 - MPMX19_03852 0.35 +1.7 96,071 - MPMX19_03852 0.35 +0.1 96,071 - MPMX19_03852 0.35 -0.6 96,071 - MPMX19_03852 0.35 -0.2 96,071 - MPMX19_03852 0.35 +0.7 96,071 - MPMX19_03852 0.35 -1.7 96,071 - MPMX19_03852 0.35 +0.3 96,071 - MPMX19_03852 0.35 +0.3 96,071 - MPMX19_03852 0.35 -0.7 96,187 + MPMX19_03852 0.40 -0.5 96,187 + MPMX19_03852 0.40 +0.2 96,188 - MPMX19_03852 0.40 +0.9 96,281 - MPMX19_03852 0.44 -1.7 96,553 + MPMX19_03852 0.57 +0.2 96,554 - MPMX19_03852 0.57 -0.7 96,554 - MPMX19_03852 0.57 +0.3 96,554 - MPMX19_03852 0.57 +0.3 96,841 + MPMX19_03852 0.70 -1.0 96,841 + MPMX19_03852 0.70 -0.7 96,841 + MPMX19_03852 0.70 +0.5 96,841 + MPMX19_03852 0.70 -0.7 96,841 + MPMX19_03852 0.70 -1.1 96,842 - MPMX19_03852 0.70 +0.9 96,842 - MPMX19_03852 0.70 +1.5 96,842 - MPMX19_03852 0.70 -1.2 96,842 - MPMX19_03852 0.70 -1.1 96,842 - MPMX19_03852 0.70 -0.2 96,851 - MPMX19_03852 0.70 -0.4 96,851 - MPMX19_03852 0.70 +1.4 96,851 - MPMX19_03852 0.70 -0.5 96,851 - MPMX19_03852 0.70 +1.2 96,851 - MPMX19_03852 0.70 -1.4 96,983 - MPMX19_03852 0.76 -2.4 96,994 + MPMX19_03852 0.77 +0.0 96,995 - MPMX19_03852 0.77 +0.1 96,995 - MPMX19_03852 0.77 +0.5 96,995 - MPMX19_03852 0.77 +0.9 96,995 - MPMX19_03852 0.77 +0.6 97,039 + MPMX19_03852 0.79 -0.1 97,243 + MPMX19_03852 0.88 -0.5 97,244 - MPMX19_03852 0.88 +1.3 97,244 - MPMX19_03852 0.88 +1.3 97,244 - MPMX19_03852 0.88 +0.9 97,244 - MPMX19_03852 0.88 -1.4 97,244 - MPMX19_03852 0.88 +2.1 97,244 - MPMX19_03852 0.88 +1.9 97,244 - MPMX19_03852 0.88 +1.5 97,244 - MPMX19_03852 0.88 +0.7 97,244 - MPMX19_03852 0.88 -1.4 97,303 + -0.2 97,303 + +1.3 97,303 + -0.2 97,303 + -1.1 97,303 + +1.1 97,303 + -0.9 97,303 + +0.6 97,303 + +0.9 97,303 + +0.2 97,303 + -0.3 97,303 + +0.8 97,303 + +1.4 97,303 + +0.3 97,303 + -0.7 97,303 + +0.3 97,304 - -1.1 97,304 - -2.4 97,304 - -1.7 97,304 - +0.4 97,304 - +0.3 97,304 - +1.5 97,304 - -0.1 97,304 - -0.3 97,304 - +0.7 97,304 - +0.6 97,304 - -1.1 97,304 - -1.1 97,304 - -0.5 97,304 - -1.7 97,304 - +0.2 97,304 - +0.0 97,797 - +0.2 97,797 - +0.3 97,849 + -0.3 97,850 - -1.1 98,010 + -0.1 98,010 + +0.1 98,010 + -0.4 98,010 + +0.6 98,010 + +0.6 98,010 + -1.1 98,010 + +0.5 98,010 + +1.2 98,011 - +0.4 98,011 - +1.9 98,011 - -0.7 98,011 - -0.5 98,011 - +0.6 98,011 - -1.1 98,011 - -0.7 98,011 - -0.1 98,019 + -2.1 98,019 + +0.9 98,019 + -0.4 98,019 + -1.4 98,019 + -0.1 98,019 + -1.8 98,019 + -1.4 98,020 - -0.5 98,020 - -1.1 98,020 - -1.9 98,020 - -0.8 98,035 + -0.7 98,035 + -1.4 98,035 + -1.1 98,035 + +0.1 98,035 + -1.1 98,035 + -0.1 98,035 + +1.2 98,035 + +0.7 98,035 + -0.1 98,035 + -0.7 98,036 - -0.7 98,036 - -1.4 98,036 - +0.9 98,036 - -0.5 98,036 - -0.3 98,036 - -0.9 98,036 - +0.1 98,036 - -0.4 98,036 - -1.7 98,235 + MPMX19_03854 0.19 -0.3 98,235 + MPMX19_03854 0.19 -0.2 98,236 - MPMX19_03854 0.19 +0.1 98,236 - MPMX19_03854 0.19 -0.1 98,236 - MPMX19_03854 0.19 -0.7 98,236 - MPMX19_03854 0.19 -1.2 98,236 - MPMX19_03854 0.19 -0.7 98,440 + MPMX19_03854 0.39 +0.9 98,440 + MPMX19_03854 0.39 -0.2 98,440 + MPMX19_03854 0.39 +0.3 98,441 - MPMX19_03854 0.39 +0.4 98,458 + MPMX19_03854 0.41 -0.1 98,458 + MPMX19_03854 0.41 -0.7 98,458 + MPMX19_03854 0.41 -0.3 98,458 + MPMX19_03854 0.41 +0.7 98,458 + MPMX19_03854 0.41 -0.7 98,459 - MPMX19_03854 0.41 -0.2 98,459 - MPMX19_03854 0.41 -0.1
Or see this region's nucleotide sequence