Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03695

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03693 and MPMX19_03694 are separated by 279 nucleotidesMPMX19_03694 and MPMX19_03695 are separated by 11 nucleotidesMPMX19_03695 and MPMX19_03696 are separated by 276 nucleotides MPMX19_03693: MPMX19_03693 - hypothetical protein, at 1,133,072 to 1,133,569 _03693 MPMX19_03694: MPMX19_03694 - hypothetical protein, at 1,133,849 to 1,134,226 _03694 MPMX19_03695: MPMX19_03695 - hypothetical protein, at 1,134,238 to 1,134,774 _03695 MPMX19_03696: MPMX19_03696 - Guanidinopropionase, at 1,135,051 to 1,136,103 _03696 Position (kb) 1134 1135Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1133.340 kb on + strand, within MPMX19_03693at 1133.340 kb on + strand, within MPMX19_03693at 1133.340 kb on + strand, within MPMX19_03693at 1133.341 kb on - strand, within MPMX19_03693at 1133.341 kb on - strand, within MPMX19_03693at 1133.341 kb on - strand, within MPMX19_03693at 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.803 kb on + strandat 1134.029 kb on + strand, within MPMX19_03694at 1134.030 kb on - strand, within MPMX19_03694at 1134.030 kb on - strand, within MPMX19_03694at 1134.030 kb on - strand, within MPMX19_03694at 1134.269 kb on + strandat 1134.270 kb on - strandat 1134.270 kb on - strandat 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.336 kb on - strand, within MPMX19_03695at 1134.336 kb on - strand, within MPMX19_03695at 1134.336 kb on - strand, within MPMX19_03695at 1134.630 kb on + strand, within MPMX19_03695at 1134.707 kb on + strand, within MPMX19_03695at 1134.708 kb on - strand, within MPMX19_03695at 1134.708 kb on - strand, within MPMX19_03695at 1134.708 kb on - strand, within MPMX19_03695at 1134.768 kb on + strandat 1134.768 kb on + strandat 1134.768 kb on + strandat 1134.768 kb on + strandat 1134.768 kb on + strandat 1134.769 kb on - strandat 1134.769 kb on - strandat 1134.769 kb on - strandat 1134.769 kb on - strandat 1135.145 kb on + strandat 1135.145 kb on + strandat 1135.146 kb on - strandat 1135.146 kb on - strandat 1135.146 kb on - strandat 1135.146 kb on - strandat 1135.146 kb on - strandat 1135.146 kb on - strandat 1135.304 kb on + strand, within MPMX19_03696at 1135.304 kb on + strand, within MPMX19_03696at 1135.304 kb on + strand, within MPMX19_03696at 1135.304 kb on + strand, within MPMX19_03696at 1135.304 kb on + strand, within MPMX19_03696at 1135.304 kb on + strand, within MPMX19_03696at 1135.304 kb on + strand, within MPMX19_03696at 1135.304 kb on + strand, within MPMX19_03696at 1135.304 kb on + strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.305 kb on - strand, within MPMX19_03696at 1135.406 kb on + strand, within MPMX19_03696at 1135.406 kb on + strand, within MPMX19_03696at 1135.406 kb on + strand, within MPMX19_03696at 1135.406 kb on + strand, within MPMX19_03696at 1135.406 kb on + strand, within MPMX19_03696at 1135.532 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.676 kb on + strand, within MPMX19_03696at 1135.677 kb on - strand, within MPMX19_03696at 1135.677 kb on - strand, within MPMX19_03696at 1135.677 kb on - strand, within MPMX19_03696at 1135.677 kb on - strand, within MPMX19_03696

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,133,340 + MPMX19_03693 0.54 -0.4
1,133,340 + MPMX19_03693 0.54 +0.1
1,133,340 + MPMX19_03693 0.54 -0.6
1,133,341 - MPMX19_03693 0.54 -1.2
1,133,341 - MPMX19_03693 0.54 +0.3
1,133,341 - MPMX19_03693 0.54 -1.7
1,133,747 + -1.7
1,133,747 + -2.3
1,133,747 + -0.4
1,133,747 + -0.7
1,133,747 + +1.6
1,133,747 + +0.3
1,133,747 + -1.2
1,133,747 + +0.6
1,133,747 + +0.6
1,133,747 + +1.7
1,133,747 + -0.9
1,133,747 + -1.1
1,133,747 + -0.1
1,133,747 + +0.0
1,133,747 + -0.4
1,133,747 + -0.9
1,133,747 + +1.7
1,133,748 - -2.0
1,133,748 - -0.9
1,133,748 - -0.2
1,133,748 - -1.7
1,133,748 - -0.0
1,133,748 - +0.6
1,133,748 - -0.4
1,133,748 - +0.6
1,133,748 - +1.9
1,133,748 - -1.7
1,133,748 - +0.6
1,133,748 - -0.6
1,133,803 + -0.2
1,134,029 + MPMX19_03694 0.48 -0.6
1,134,030 - MPMX19_03694 0.48 +0.6
1,134,030 - MPMX19_03694 0.48 +1.1
1,134,030 - MPMX19_03694 0.48 +0.1
1,134,269 + +0.1
1,134,270 - -1.2
1,134,270 - -0.4
1,134,335 + MPMX19_03695 0.18 -0.9
1,134,335 + MPMX19_03695 0.18 +1.1
1,134,335 + MPMX19_03695 0.18 -1.2
1,134,335 + MPMX19_03695 0.18 -0.5
1,134,335 + MPMX19_03695 0.18 +0.0
1,134,335 + MPMX19_03695 0.18 +0.9
1,134,335 + MPMX19_03695 0.18 -1.9
1,134,335 + MPMX19_03695 0.18 -0.3
1,134,335 + MPMX19_03695 0.18 +1.3
1,134,335 + MPMX19_03695 0.18 -0.0
1,134,335 + MPMX19_03695 0.18 +0.1
1,134,336 - MPMX19_03695 0.18 -0.1
1,134,336 - MPMX19_03695 0.18 -0.9
1,134,336 - MPMX19_03695 0.18 +0.1
1,134,630 + MPMX19_03695 0.73 -2.2
1,134,707 + MPMX19_03695 0.87 -0.3
1,134,708 - MPMX19_03695 0.88 +0.1
1,134,708 - MPMX19_03695 0.88 -0.1
1,134,708 - MPMX19_03695 0.88 -0.7
1,134,768 + +1.1
1,134,768 + +0.1
1,134,768 + -1.0
1,134,768 + -1.7
1,134,768 + -1.4
1,134,769 - -1.3
1,134,769 - +0.3
1,134,769 - -1.2
1,134,769 - +2.9
1,135,145 + -0.3
1,135,145 + -1.7
1,135,146 - -0.2
1,135,146 - +0.6
1,135,146 - +0.6
1,135,146 - -1.5
1,135,146 - -0.2
1,135,146 - -1.2
1,135,304 + MPMX19_03696 0.24 +0.6
1,135,304 + MPMX19_03696 0.24 +1.1
1,135,304 + MPMX19_03696 0.24 -0.4
1,135,304 + MPMX19_03696 0.24 -1.0
1,135,304 + MPMX19_03696 0.24 -1.7
1,135,304 + MPMX19_03696 0.24 +1.4
1,135,304 + MPMX19_03696 0.24 -1.7
1,135,304 + MPMX19_03696 0.24 -0.1
1,135,304 + MPMX19_03696 0.24 -1.4
1,135,305 - MPMX19_03696 0.24 -0.4
1,135,305 - MPMX19_03696 0.24 -0.1
1,135,305 - MPMX19_03696 0.24 -0.7
1,135,305 - MPMX19_03696 0.24 -0.5
1,135,305 - MPMX19_03696 0.24 -0.2
1,135,305 - MPMX19_03696 0.24 -0.7
1,135,305 - MPMX19_03696 0.24 -0.0
1,135,305 - MPMX19_03696 0.24 -1.2
1,135,305 - MPMX19_03696 0.24 -0.3
1,135,305 - MPMX19_03696 0.24 -1.5
1,135,305 - MPMX19_03696 0.24 +0.1
1,135,305 - MPMX19_03696 0.24 -0.6
1,135,305 - MPMX19_03696 0.24 +2.1
1,135,305 - MPMX19_03696 0.24 -0.9
1,135,305 - MPMX19_03696 0.24 -0.9
1,135,406 + MPMX19_03696 0.34 -0.6
1,135,406 + MPMX19_03696 0.34 +0.1
1,135,406 + MPMX19_03696 0.34 +0.1
1,135,406 + MPMX19_03696 0.34 -0.1
1,135,406 + MPMX19_03696 0.34 +0.1
1,135,532 + MPMX19_03696 0.46 -1.1
1,135,676 + MPMX19_03696 0.59 -0.3
1,135,676 + MPMX19_03696 0.59 -1.2
1,135,676 + MPMX19_03696 0.59 +0.4
1,135,676 + MPMX19_03696 0.59 -2.4
1,135,676 + MPMX19_03696 0.59 +0.3
1,135,676 + MPMX19_03696 0.59 -2.2
1,135,676 + MPMX19_03696 0.59 -2.9
1,135,676 + MPMX19_03696 0.59 -0.2
1,135,676 + MPMX19_03696 0.59 +0.2
1,135,676 + MPMX19_03696 0.59 -2.6
1,135,677 - MPMX19_03696 0.59 -1.1
1,135,677 - MPMX19_03696 0.59 +0.7
1,135,677 - MPMX19_03696 0.59 +0.3
1,135,677 - MPMX19_03696 0.59 -0.5

Or see this region's nucleotide sequence