Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03486

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03485 and MPMX19_03486 are separated by 30 nucleotidesMPMX19_03486 and MPMX19_03487 are separated by 172 nucleotides MPMX19_03485: MPMX19_03485 - (S)-mandelate dehydrogenase, at 897,107 to 898,282 _03485 MPMX19_03486: MPMX19_03486 - Pca regulon regulatory protein, at 898,313 to 899,170 _03486 MPMX19_03487: MPMX19_03487 - 4-hydroxy-tetrahydrodipicolinate synthase, at 899,343 to 900,275 _03487 Position (kb) 898 899 900Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 897.640 kb on - strand, within MPMX19_03485at 897.648 kb on + strand, within MPMX19_03485at 897.648 kb on + strand, within MPMX19_03485at 897.775 kb on + strand, within MPMX19_03485at 897.777 kb on + strand, within MPMX19_03485at 897.778 kb on - strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 898.014 kb on + strand, within MPMX19_03485at 898.014 kb on + strand, within MPMX19_03485at 898.200 kb on + strandat 898.200 kb on + strandat 898.200 kb on + strandat 898.200 kb on + strandat 898.200 kb on + strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.323 kb on + strandat 898.323 kb on + strandat 898.324 kb on - strandat 898.324 kb on - strandat 898.324 kb on - strandat 898.324 kb on - strandat 898.521 kb on + strand, within MPMX19_03486at 898.521 kb on + strand, within MPMX19_03486at 898.521 kb on + strand, within MPMX19_03486at 898.521 kb on + strand, within MPMX19_03486at 898.522 kb on - strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.677 kb on + strand, within MPMX19_03486at 898.677 kb on + strand, within MPMX19_03486at 898.678 kb on - strand, within MPMX19_03486at 898.678 kb on - strand, within MPMX19_03486at 898.678 kb on - strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.747 kb on - strand, within MPMX19_03486at 898.747 kb on - strand, within MPMX19_03486at 898.818 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.863 kb on + strand, within MPMX19_03486at 898.863 kb on + strand, within MPMX19_03486at 898.864 kb on - strand, within MPMX19_03486at 898.864 kb on - strand, within MPMX19_03486at 898.896 kb on + strand, within MPMX19_03486at 898.896 kb on + strand, within MPMX19_03486at 898.897 kb on - strand, within MPMX19_03486at 898.897 kb on - strand, within MPMX19_03486at 898.897 kb on - strand, within MPMX19_03486at 898.926 kb on + strand, within MPMX19_03486at 898.926 kb on + strand, within MPMX19_03486at 898.947 kb on + strand, within MPMX19_03486at 898.947 kb on + strand, within MPMX19_03486at 898.948 kb on - strand, within MPMX19_03486at 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.374 kb on + strandat 899.374 kb on + strandat 899.374 kb on + strandat 899.375 kb on - strandat 899.375 kb on - strandat 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.852 kb on - strand, within MPMX19_03487at 899.852 kb on - strand, within MPMX19_03487at 899.884 kb on + strand, within MPMX19_03487at 899.885 kb on - strand, within MPMX19_03487at 899.896 kb on + strand, within MPMX19_03487at 899.897 kb on - strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.932 kb on + strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 900.002 kb on - strand, within MPMX19_03487at 900.002 kb on - strand, within MPMX19_03487at 900.002 kb on - strand, within MPMX19_03487at 900.004 kb on + strand, within MPMX19_03487at 900.119 kb on - strand, within MPMX19_03487

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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897,640 - MPMX19_03485 0.45 -1.2
897,648 + MPMX19_03485 0.46 +0.7
897,648 + MPMX19_03485 0.46 -0.4
897,775 + MPMX19_03485 0.57 +0.6
897,777 + MPMX19_03485 0.57 -1.2
897,778 - MPMX19_03485 0.57 +0.1
897,888 + MPMX19_03485 0.66 +0.8
897,888 + MPMX19_03485 0.66 +0.3
897,888 + MPMX19_03485 0.66 -2.2
897,888 + MPMX19_03485 0.66 +0.6
897,888 + MPMX19_03485 0.66 -2.2
897,888 + MPMX19_03485 0.66 -0.4
897,888 + MPMX19_03485 0.66 -0.6
897,889 - MPMX19_03485 0.66 +0.8
897,889 - MPMX19_03485 0.66 -2.4
897,889 - MPMX19_03485 0.66 +0.9
897,889 - MPMX19_03485 0.66 -0.6
897,889 - MPMX19_03485 0.66 -1.4
897,889 - MPMX19_03485 0.66 -0.1
897,889 - MPMX19_03485 0.66 -0.9
897,889 - MPMX19_03485 0.66 +0.4
897,889 - MPMX19_03485 0.66 -1.3
897,889 - MPMX19_03485 0.66 -1.2
897,889 - MPMX19_03485 0.66 -0.8
898,014 + MPMX19_03485 0.77 -0.4
898,014 + MPMX19_03485 0.77 +0.7
898,200 + -1.9
898,200 + +0.4
898,200 + -0.2
898,200 + -0.2
898,200 + +1.1
898,201 - +1.6
898,201 - -0.7
898,201 - -1.4
898,201 - -1.4
898,201 - +0.6
898,201 - +0.5
898,201 - -1.4
898,201 - -2.2
898,323 + +0.4
898,323 + -0.2
898,324 - +0.5
898,324 - -0.4
898,324 - -0.4
898,324 - +0.9
898,521 + MPMX19_03486 0.24 -0.9
898,521 + MPMX19_03486 0.24 +0.6
898,521 + MPMX19_03486 0.24 -0.9
898,521 + MPMX19_03486 0.24 -0.7
898,522 - MPMX19_03486 0.24 +2.1
898,674 + MPMX19_03486 0.42 +0.7
898,674 + MPMX19_03486 0.42 -0.4
898,674 + MPMX19_03486 0.42 -0.2
898,674 + MPMX19_03486 0.42 -1.7
898,675 - MPMX19_03486 0.42 +0.7
898,675 - MPMX19_03486 0.42 +0.1
898,675 - MPMX19_03486 0.42 +0.7
898,675 - MPMX19_03486 0.42 -2.0
898,675 - MPMX19_03486 0.42 -0.1
898,677 + MPMX19_03486 0.42 -0.4
898,677 + MPMX19_03486 0.42 -2.3
898,678 - MPMX19_03486 0.43 -0.1
898,678 - MPMX19_03486 0.43 +0.9
898,678 - MPMX19_03486 0.43 +0.7
898,746 + MPMX19_03486 0.50 +0.4
898,746 + MPMX19_03486 0.50 -0.3
898,746 + MPMX19_03486 0.50 -0.0
898,746 + MPMX19_03486 0.50 -0.9
898,746 + MPMX19_03486 0.50 -0.4
898,746 + MPMX19_03486 0.50 -0.1
898,747 - MPMX19_03486 0.51 +0.9
898,747 - MPMX19_03486 0.51 +0.1
898,818 + MPMX19_03486 0.59 -0.4
898,857 + MPMX19_03486 0.63 -0.4
898,857 + MPMX19_03486 0.63 -1.2
898,857 + MPMX19_03486 0.63 -0.2
898,857 + MPMX19_03486 0.63 -0.2
898,857 + MPMX19_03486 0.63 +0.7
898,857 + MPMX19_03486 0.63 +0.7
898,857 + MPMX19_03486 0.63 -0.9
898,858 - MPMX19_03486 0.64 +0.8
898,858 - MPMX19_03486 0.64 +0.3
898,858 - MPMX19_03486 0.64 -0.9
898,858 - MPMX19_03486 0.64 +0.3
898,858 - MPMX19_03486 0.64 -1.2
898,858 - MPMX19_03486 0.64 -0.0
898,858 - MPMX19_03486 0.64 -0.4
898,858 - MPMX19_03486 0.64 -1.4
898,863 + MPMX19_03486 0.64 +1.5
898,863 + MPMX19_03486 0.64 +0.5
898,864 - MPMX19_03486 0.64 -2.2
898,864 - MPMX19_03486 0.64 +0.1
898,896 + MPMX19_03486 0.68 -0.7
898,896 + MPMX19_03486 0.68 -0.4
898,897 - MPMX19_03486 0.68 -0.9
898,897 - MPMX19_03486 0.68 -0.1
898,897 - MPMX19_03486 0.68 +0.6
898,926 + MPMX19_03486 0.71 -1.8
898,926 + MPMX19_03486 0.71 +0.9
898,947 + MPMX19_03486 0.74 -1.4
898,947 + MPMX19_03486 0.74 -1.2
898,948 - MPMX19_03486 0.74 +0.7
899,298 + -1.7
899,298 + -1.4
899,298 + -0.4
899,298 + +0.5
899,298 + -0.4
899,298 + -3.2
899,298 + -1.6
899,298 + -0.1
899,298 + -0.4
899,298 + -0.4
899,299 - +2.7
899,299 - -0.8
899,299 - -0.4
899,299 - +0.7
899,299 - +1.1
899,299 - -0.4
899,299 - +0.1
899,299 - +0.1
899,299 - -1.4
899,299 - -0.2
899,374 + -1.9
899,374 + -0.9
899,374 + -0.7
899,375 - +0.8
899,375 - +0.4
899,746 + MPMX19_03487 0.43 +1.0
899,746 + MPMX19_03487 0.43 +1.1
899,746 + MPMX19_03487 0.43 +1.1
899,746 + MPMX19_03487 0.43 +2.7
899,746 + MPMX19_03487 0.43 +1.1
899,746 + MPMX19_03487 0.43 -0.9
899,746 + MPMX19_03487 0.43 -0.0
899,746 + MPMX19_03487 0.43 -0.2
899,746 + MPMX19_03487 0.43 -1.2
899,746 + MPMX19_03487 0.43 -0.7
899,746 + MPMX19_03487 0.43 +0.0
899,746 + MPMX19_03487 0.43 +1.1
899,747 - MPMX19_03487 0.43 -1.7
899,747 - MPMX19_03487 0.43 +0.0
899,747 - MPMX19_03487 0.43 -0.9
899,747 - MPMX19_03487 0.43 +0.9
899,747 - MPMX19_03487 0.43 +0.6
899,747 - MPMX19_03487 0.43 -0.3
899,747 - MPMX19_03487 0.43 -0.2
899,747 - MPMX19_03487 0.43 +0.0
899,747 - MPMX19_03487 0.43 -0.4
899,747 - MPMX19_03487 0.43 -0.9
899,851 + MPMX19_03487 0.54 -2.0
899,851 + MPMX19_03487 0.54 -1.4
899,851 + MPMX19_03487 0.54 -1.4
899,851 + MPMX19_03487 0.54 -0.2
899,851 + MPMX19_03487 0.54 +1.1
899,852 - MPMX19_03487 0.55 -0.5
899,852 - MPMX19_03487 0.55 +0.7
899,884 + MPMX19_03487 0.58 +1.1
899,885 - MPMX19_03487 0.58 +0.6
899,896 + MPMX19_03487 0.59 +0.7
899,897 - MPMX19_03487 0.59 -0.4
899,929 + MPMX19_03487 0.63 -1.7
899,929 + MPMX19_03487 0.63 -0.9
899,929 + MPMX19_03487 0.63 -1.0
899,929 + MPMX19_03487 0.63 +0.6
899,929 + MPMX19_03487 0.63 -0.4
899,929 + MPMX19_03487 0.63 +0.6
899,929 + MPMX19_03487 0.63 +0.4
899,929 + MPMX19_03487 0.63 +0.8
899,929 + MPMX19_03487 0.63 -0.6
899,929 + MPMX19_03487 0.63 +0.1
899,929 + MPMX19_03487 0.63 -0.1
899,929 + MPMX19_03487 0.63 +0.4
899,930 - MPMX19_03487 0.63 -0.4
899,930 - MPMX19_03487 0.63 +0.7
899,930 - MPMX19_03487 0.63 +1.1
899,930 - MPMX19_03487 0.63 +1.4
899,930 - MPMX19_03487 0.63 -1.9
899,930 - MPMX19_03487 0.63 -1.4
899,930 - MPMX19_03487 0.63 -0.4
899,930 - MPMX19_03487 0.63 -0.9
899,930 - MPMX19_03487 0.63 -0.3
899,932 + MPMX19_03487 0.63 -0.4
899,933 - MPMX19_03487 0.63 -1.2
899,933 - MPMX19_03487 0.63 -0.5
899,933 - MPMX19_03487 0.63 -0.3
899,933 - MPMX19_03487 0.63 -1.9
899,933 - MPMX19_03487 0.63 -0.9
900,002 - MPMX19_03487 0.71 +0.1
900,002 - MPMX19_03487 0.71 -1.3
900,002 - MPMX19_03487 0.71 -1.2
900,004 + MPMX19_03487 0.71 -0.7
900,119 - MPMX19_03487 0.83 -1.9

Or see this region's nucleotide sequence