Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03354

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03353 and MPMX19_03354 are separated by 128 nucleotidesMPMX19_03354 and MPMX19_03355 are separated by 18 nucleotides MPMX19_03353: MPMX19_03353 - hypothetical protein, at 713,863 to 714,804 _03353 MPMX19_03354: MPMX19_03354 - hypothetical protein, at 714,933 to 716,132 _03354 MPMX19_03355: MPMX19_03355 - hypothetical protein, at 716,151 to 724,568 _03355 Position (kb) 714 715 716 717Strain fitness (log2 ratio) -2 -1 0 1 2at 714.342 kb on - strand, within MPMX19_03353at 714.577 kb on + strand, within MPMX19_03353at 714.577 kb on + strand, within MPMX19_03353at 714.577 kb on + strand, within MPMX19_03353at 714.577 kb on + strand, within MPMX19_03353at 714.578 kb on - strand, within MPMX19_03353at 714.578 kb on - strand, within MPMX19_03353at 714.578 kb on - strand, within MPMX19_03353at 714.578 kb on - strand, within MPMX19_03353at 714.616 kb on + strand, within MPMX19_03353at 714.616 kb on + strand, within MPMX19_03353at 714.617 kb on - strand, within MPMX19_03353at 714.617 kb on - strand, within MPMX19_03353at 714.617 kb on - strand, within MPMX19_03353at 714.739 kb on + strandat 714.740 kb on - strandat 714.742 kb on + strandat 714.742 kb on + strandat 714.743 kb on - strandat 714.743 kb on - strandat 714.743 kb on - strandat 714.743 kb on - strandat 714.743 kb on - strandat 714.895 kb on + strandat 714.895 kb on + strandat 714.895 kb on + strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.897 kb on + strandat 714.897 kb on + strandat 714.897 kb on + strandat 714.897 kb on + strandat 714.897 kb on + strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.913 kb on + strandat 714.913 kb on + strandat 714.914 kb on - strandat 714.914 kb on - strandat 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.187 kb on + strand, within MPMX19_03354at 715.187 kb on + strand, within MPMX19_03354at 715.188 kb on - strand, within MPMX19_03354at 715.188 kb on - strand, within MPMX19_03354at 715.188 kb on - strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.611 kb on + strand, within MPMX19_03354at 715.611 kb on + strand, within MPMX19_03354at 715.611 kb on + strand, within MPMX19_03354at 715.650 kb on + strand, within MPMX19_03354at 715.650 kb on + strand, within MPMX19_03354at 715.650 kb on + strand, within MPMX19_03354at 715.651 kb on - strand, within MPMX19_03354at 715.651 kb on - strand, within MPMX19_03354at 715.833 kb on + strand, within MPMX19_03354at 715.833 kb on + strand, within MPMX19_03354at 715.833 kb on + strand, within MPMX19_03354at 715.833 kb on + strand, within MPMX19_03354at 715.833 kb on + strand, within MPMX19_03354at 715.845 kb on + strand, within MPMX19_03354at 715.845 kb on + strand, within MPMX19_03354at 715.846 kb on - strand, within MPMX19_03354at 715.846 kb on - strand, within MPMX19_03354at 715.846 kb on - strand, within MPMX19_03354at 715.846 kb on - strand, within MPMX19_03354at 715.923 kb on + strand, within MPMX19_03354at 715.923 kb on + strand, within MPMX19_03354at 715.923 kb on + strand, within MPMX19_03354at 715.923 kb on + strand, within MPMX19_03354at 715.923 kb on + strand, within MPMX19_03354at 715.923 kb on + strand, within MPMX19_03354at 715.923 kb on + strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 715.924 kb on - strand, within MPMX19_03354at 716.025 kb on + strandat 716.025 kb on + strandat 716.025 kb on + strandat 716.026 kb on - strandat 716.416 kb on - strandat 716.416 kb on - strandat 717.108 kb on - strand, within MPMX19_03355

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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714,342 - MPMX19_03353 0.51 +0.4
714,577 + MPMX19_03353 0.76 -0.1
714,577 + MPMX19_03353 0.76 +1.1
714,577 + MPMX19_03353 0.76 -0.6
714,577 + MPMX19_03353 0.76 -0.9
714,578 - MPMX19_03353 0.76 -0.1
714,578 - MPMX19_03353 0.76 +0.1
714,578 - MPMX19_03353 0.76 -0.2
714,578 - MPMX19_03353 0.76 -1.3
714,616 + MPMX19_03353 0.80 +0.4
714,616 + MPMX19_03353 0.80 -0.5
714,617 - MPMX19_03353 0.80 +0.1
714,617 - MPMX19_03353 0.80 -0.9
714,617 - MPMX19_03353 0.80 -0.2
714,739 + -0.3
714,740 - +0.4
714,742 + +0.8
714,742 + -2.0
714,743 - -1.9
714,743 - -0.0
714,743 - -1.2
714,743 - +1.8
714,743 - -1.6
714,895 + -0.2
714,895 + +0.4
714,895 + +1.7
714,896 - -1.6
714,896 - +1.7
714,896 - -0.2
714,896 - -0.2
714,896 - -0.1
714,896 - -1.2
714,896 - -0.9
714,896 - +0.9
714,896 - -1.7
714,897 + -0.0
714,897 + -1.0
714,897 + -0.9
714,897 + +0.9
714,897 + -1.5
714,898 - -0.2
714,898 - +0.3
714,898 - -0.4
714,898 - -1.5
714,898 - -0.7
714,898 - -2.1
714,898 - -0.6
714,913 + -0.5
714,913 + -0.3
714,914 - -1.9
714,914 - -1.9
715,134 + MPMX19_03354 0.17 +0.5
715,134 + MPMX19_03354 0.17 -1.2
715,134 + MPMX19_03354 0.17 +0.1
715,134 + MPMX19_03354 0.17 -0.5
715,134 + MPMX19_03354 0.17 -0.5
715,134 + MPMX19_03354 0.17 -1.3
715,135 - MPMX19_03354 0.17 -0.8
715,135 - MPMX19_03354 0.17 -0.5
715,135 - MPMX19_03354 0.17 +0.1
715,135 - MPMX19_03354 0.17 -0.7
715,135 - MPMX19_03354 0.17 -0.6
715,135 - MPMX19_03354 0.17 +1.7
715,187 + MPMX19_03354 0.21 -1.0
715,187 + MPMX19_03354 0.21 -1.0
715,188 - MPMX19_03354 0.21 +0.1
715,188 - MPMX19_03354 0.21 -1.3
715,188 - MPMX19_03354 0.21 -1.3
715,380 + MPMX19_03354 0.37 +0.6
715,380 + MPMX19_03354 0.37 -2.3
715,380 + MPMX19_03354 0.37 +0.8
715,380 + MPMX19_03354 0.37 -0.5
715,380 + MPMX19_03354 0.37 +0.5
715,380 + MPMX19_03354 0.37 -0.5
715,380 + MPMX19_03354 0.37 -0.9
715,380 + MPMX19_03354 0.37 -1.2
715,512 + MPMX19_03354 0.48 +0.3
715,512 + MPMX19_03354 0.48 +0.6
715,512 + MPMX19_03354 0.48 -1.5
715,512 + MPMX19_03354 0.48 -1.9
715,512 + MPMX19_03354 0.48 -1.3
715,512 + MPMX19_03354 0.48 -1.2
715,512 + MPMX19_03354 0.48 +1.1
715,512 + MPMX19_03354 0.48 -0.7
715,513 - MPMX19_03354 0.48 -0.1
715,513 - MPMX19_03354 0.48 -0.9
715,513 - MPMX19_03354 0.48 +0.0
715,513 - MPMX19_03354 0.48 -0.3
715,513 - MPMX19_03354 0.48 +2.7
715,513 - MPMX19_03354 0.48 -1.7
715,513 - MPMX19_03354 0.48 -1.0
715,611 + MPMX19_03354 0.56 +0.4
715,611 + MPMX19_03354 0.56 +0.1
715,611 + MPMX19_03354 0.56 -0.7
715,650 + MPMX19_03354 0.60 +0.5
715,650 + MPMX19_03354 0.60 -0.2
715,650 + MPMX19_03354 0.60 -0.9
715,651 - MPMX19_03354 0.60 -1.0
715,651 - MPMX19_03354 0.60 -1.7
715,833 + MPMX19_03354 0.75 -0.2
715,833 + MPMX19_03354 0.75 -0.5
715,833 + MPMX19_03354 0.75 -1.6
715,833 + MPMX19_03354 0.75 -0.5
715,833 + MPMX19_03354 0.75 +0.6
715,845 + MPMX19_03354 0.76 -1.0
715,845 + MPMX19_03354 0.76 -1.0
715,846 - MPMX19_03354 0.76 +0.9
715,846 - MPMX19_03354 0.76 -1.5
715,846 - MPMX19_03354 0.76 -1.5
715,846 - MPMX19_03354 0.76 +0.1
715,923 + MPMX19_03354 0.82 -0.2
715,923 + MPMX19_03354 0.82 -1.7
715,923 + MPMX19_03354 0.82 -1.3
715,923 + MPMX19_03354 0.82 +1.1
715,923 + MPMX19_03354 0.82 -2.5
715,923 + MPMX19_03354 0.82 -0.2
715,923 + MPMX19_03354 0.82 -0.9
715,924 - MPMX19_03354 0.83 -0.2
715,924 - MPMX19_03354 0.83 -0.9
715,924 - MPMX19_03354 0.83 -0.5
715,924 - MPMX19_03354 0.83 +1.1
715,924 - MPMX19_03354 0.83 -0.3
715,924 - MPMX19_03354 0.83 +1.7
715,924 - MPMX19_03354 0.83 +1.1
715,924 - MPMX19_03354 0.83 -0.9
715,924 - MPMX19_03354 0.83 +0.3
715,924 - MPMX19_03354 0.83 +0.1
716,025 + -0.5
716,025 + +0.3
716,025 + +0.1
716,026 - +0.1
716,416 - -0.1
716,416 - -0.2
717,108 - MPMX19_03355 0.11 -1.2

Or see this region's nucleotide sequence