Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03334 and MPMX19_03335 are separated by 183 nucleotides MPMX19_03335 and MPMX19_03336 are separated by 43 nucleotides
MPMX19_03334: MPMX19_03334 - Alanine racemase 1, at 688,234 to 689,343
_03334
MPMX19_03335: MPMX19_03335 - hypothetical protein, at 689,527 to 690,003
_03335
MPMX19_03336: MPMX19_03336 - hypothetical protein, at 690,047 to 691,135
_03336
Position (kb) 689
690
691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 688.532 kb on + strand, within MPMX19_03334 at 688.532 kb on + strand, within MPMX19_03334 at 688.533 kb on - strand, within MPMX19_03334 at 688.533 kb on - strand, within MPMX19_03334 at 688.533 kb on - strand, within MPMX19_03334 at 688.626 kb on - strand, within MPMX19_03334 at 688.740 kb on - strand, within MPMX19_03334 at 688.765 kb on - strand, within MPMX19_03334 at 688.765 kb on - strand, within MPMX19_03334 at 689.294 kb on + strand at 689.294 kb on + strand at 689.294 kb on + strand at 689.294 kb on + strand at 689.295 kb on - strand at 689.295 kb on - strand at 689.382 kb on + strand at 689.383 kb on - strand at 689.421 kb on + strand at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 689.730 kb on - strand, within MPMX19_03335 at 690.024 kb on + strand at 690.024 kb on + strand at 690.105 kb on + strand at 690.105 kb on + strand at 690.106 kb on - strand at 690.106 kb on - strand at 690.106 kb on - strand at 690.204 kb on + strand, within MPMX19_03336 at 690.205 kb on - strand, within MPMX19_03336 at 690.205 kb on - strand, within MPMX19_03336 at 690.205 kb on - strand, within MPMX19_03336 at 690.387 kb on + strand, within MPMX19_03336 at 690.504 kb on + strand, within MPMX19_03336 at 690.504 kb on + strand, within MPMX19_03336 at 690.543 kb on + strand, within MPMX19_03336 at 690.630 kb on + strand, within MPMX19_03336 at 690.631 kb on - strand, within MPMX19_03336 at 690.645 kb on + strand, within MPMX19_03336 at 690.646 kb on - strand, within MPMX19_03336 at 690.672 kb on + strand, within MPMX19_03336 at 690.672 kb on + strand, within MPMX19_03336 at 690.753 kb on + strand, within MPMX19_03336 at 690.753 kb on + strand, within MPMX19_03336 at 690.753 kb on + strand, within MPMX19_03336 at 690.753 kb on + strand, within MPMX19_03336 at 690.753 kb on + strand, within MPMX19_03336 at 690.753 kb on + strand, within MPMX19_03336 at 690.753 kb on + strand, within MPMX19_03336 at 690.753 kb on + strand, within MPMX19_03336 at 690.753 kb on + strand, within MPMX19_03336 at 690.754 kb on - strand, within MPMX19_03336 at 690.754 kb on - strand, within MPMX19_03336 at 690.870 kb on + strand, within MPMX19_03336 at 690.870 kb on + strand, within MPMX19_03336 at 690.871 kb on - strand, within MPMX19_03336
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 688,532 + MPMX19_03334 0.27 -1.8 688,532 + MPMX19_03334 0.27 -0.4 688,533 - MPMX19_03334 0.27 -0.7 688,533 - MPMX19_03334 0.27 +2.7 688,533 - MPMX19_03334 0.27 -0.6 688,626 - MPMX19_03334 0.35 -1.7 688,740 - MPMX19_03334 0.46 -2.0 688,765 - MPMX19_03334 0.48 -0.4 688,765 - MPMX19_03334 0.48 +0.6 689,294 + -1.9 689,294 + -0.6 689,294 + -0.2 689,294 + -0.4 689,295 - +0.5 689,295 - -0.4 689,382 + +0.9 689,383 - +2.1 689,421 + +0.9 689,730 - MPMX19_03335 0.43 -1.2 689,730 - MPMX19_03335 0.43 +0.8 689,730 - MPMX19_03335 0.43 +1.1 689,730 - MPMX19_03335 0.43 -1.2 689,730 - MPMX19_03335 0.43 +1.1 689,730 - MPMX19_03335 0.43 -1.2 689,730 - MPMX19_03335 0.43 +1.0 690,024 + -0.1 690,024 + -0.6 690,105 + -1.1 690,105 + +0.6 690,106 - -0.4 690,106 - -0.7 690,106 - +0.7 690,204 + MPMX19_03336 0.14 +0.2 690,205 - MPMX19_03336 0.15 +1.1 690,205 - MPMX19_03336 0.15 -1.8 690,205 - MPMX19_03336 0.15 -1.9 690,387 + MPMX19_03336 0.31 -1.4 690,504 + MPMX19_03336 0.42 +0.6 690,504 + MPMX19_03336 0.42 -1.4 690,543 + MPMX19_03336 0.46 +0.4 690,630 + MPMX19_03336 0.54 -0.3 690,631 - MPMX19_03336 0.54 -1.9 690,645 + MPMX19_03336 0.55 +0.1 690,646 - MPMX19_03336 0.55 +0.1 690,672 + MPMX19_03336 0.57 -0.0 690,672 + MPMX19_03336 0.57 -0.7 690,753 + MPMX19_03336 0.65 -0.4 690,753 + MPMX19_03336 0.65 -1.9 690,753 + MPMX19_03336 0.65 -0.2 690,753 + MPMX19_03336 0.65 -0.9 690,753 + MPMX19_03336 0.65 -1.7 690,753 + MPMX19_03336 0.65 +1.8 690,753 + MPMX19_03336 0.65 -0.4 690,753 + MPMX19_03336 0.65 -0.1 690,753 + MPMX19_03336 0.65 +0.7 690,754 - MPMX19_03336 0.65 -1.9 690,754 - MPMX19_03336 0.65 -1.4 690,870 + MPMX19_03336 0.76 -0.4 690,870 + MPMX19_03336 0.76 -0.2 690,871 - MPMX19_03336 0.76 +2.1
Or see this region's nucleotide sequence