Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03278

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03277 and MPMX19_03278 are separated by 79 nucleotidesMPMX19_03278 and MPMX19_03279 are separated by 16 nucleotides MPMX19_03277: MPMX19_03277 - hypothetical protein, at 622,773 to 623,816 _03277 MPMX19_03278: MPMX19_03278 - hypothetical protein, at 623,896 to 624,954 _03278 MPMX19_03279: MPMX19_03279 - hypothetical protein, at 624,971 to 626,230 _03279 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2 3at 622.908 kb on + strand, within MPMX19_03277at 622.908 kb on + strand, within MPMX19_03277at 622.909 kb on - strand, within MPMX19_03277at 622.909 kb on - strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.960 kb on - strand, within MPMX19_03277at 622.960 kb on - strand, within MPMX19_03277at 623.322 kb on + strand, within MPMX19_03277at 623.463 kb on + strand, within MPMX19_03277at 623.463 kb on + strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.814 kb on + strandat 623.814 kb on + strandat 623.814 kb on + strandat 623.814 kb on + strandat 623.814 kb on + strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.905 kb on + strandat 624.094 kb on + strand, within MPMX19_03278at 624.262 kb on + strand, within MPMX19_03278at 624.262 kb on + strand, within MPMX19_03278at 624.262 kb on + strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.311 kb on - strand, within MPMX19_03278at 624.311 kb on - strand, within MPMX19_03278at 624.682 kb on + strand, within MPMX19_03278at 624.683 kb on - strand, within MPMX19_03278at 624.787 kb on + strand, within MPMX19_03278at 624.787 kb on + strand, within MPMX19_03278at 624.787 kb on + strand, within MPMX19_03278at 624.788 kb on - strand, within MPMX19_03278at 625.235 kb on + strand, within MPMX19_03279at 625.235 kb on + strand, within MPMX19_03279at 625.235 kb on + strand, within MPMX19_03279at 625.235 kb on + strand, within MPMX19_03279at 625.236 kb on - strand, within MPMX19_03279at 625.236 kb on - strand, within MPMX19_03279at 625.236 kb on - strand, within MPMX19_03279at 625.236 kb on - strand, within MPMX19_03279at 625.310 kb on + strand, within MPMX19_03279at 625.310 kb on + strand, within MPMX19_03279at 625.478 kb on + strand, within MPMX19_03279at 625.478 kb on + strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.517 kb on - strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.617 kb on + strand, within MPMX19_03279at 625.617 kb on + strand, within MPMX19_03279at 625.617 kb on + strand, within MPMX19_03279at 625.617 kb on + strand, within MPMX19_03279at 625.618 kb on - strand, within MPMX19_03279at 625.618 kb on - strand, within MPMX19_03279at 625.618 kb on - strand, within MPMX19_03279at 625.835 kb on + strand, within MPMX19_03279at 625.835 kb on + strand, within MPMX19_03279at 625.835 kb on + strand, within MPMX19_03279at 625.835 kb on + strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
622,908 + MPMX19_03277 0.13 -0.9
622,908 + MPMX19_03277 0.13 +0.0
622,909 - MPMX19_03277 0.13 -1.0
622,909 - MPMX19_03277 0.13 -2.0
622,959 + MPMX19_03277 0.18 -1.9
622,959 + MPMX19_03277 0.18 -0.8
622,959 + MPMX19_03277 0.18 +0.1
622,960 - MPMX19_03277 0.18 -0.1
622,960 - MPMX19_03277 0.18 -0.3
623,322 + MPMX19_03277 0.53 -0.4
623,463 + MPMX19_03277 0.66 -1.9
623,463 + MPMX19_03277 0.66 -1.9
623,464 - MPMX19_03277 0.66 +1.1
623,464 - MPMX19_03277 0.66 -1.7
623,464 - MPMX19_03277 0.66 -0.9
623,464 - MPMX19_03277 0.66 +0.3
623,601 + MPMX19_03277 0.79 -0.9
623,601 + MPMX19_03277 0.79 -2.3
623,601 + MPMX19_03277 0.79 -1.7
623,601 + MPMX19_03277 0.79 -0.9
623,602 - MPMX19_03277 0.79 +1.1
623,602 - MPMX19_03277 0.79 -0.2
623,602 - MPMX19_03277 0.79 -0.1
623,602 - MPMX19_03277 0.79 -1.2
623,602 - MPMX19_03277 0.79 -0.2
623,814 + +0.1
623,814 + -1.7
623,814 + -0.1
623,814 + -0.6
623,814 + -2.0
623,815 - -0.9
623,815 - -0.7
623,815 - -1.0
623,815 - +2.5
623,815 - -2.1
623,815 - -0.3
623,815 - +0.2
623,905 + -1.4
624,094 + MPMX19_03278 0.19 +0.3
624,262 + MPMX19_03278 0.35 +0.0
624,262 + MPMX19_03278 0.35 +0.9
624,262 + MPMX19_03278 0.35 -0.3
624,263 - MPMX19_03278 0.35 -0.3
624,263 - MPMX19_03278 0.35 +0.0
624,263 - MPMX19_03278 0.35 -1.9
624,263 - MPMX19_03278 0.35 -0.6
624,310 + MPMX19_03278 0.39 -0.3
624,310 + MPMX19_03278 0.39 -2.3
624,310 + MPMX19_03278 0.39 +0.7
624,310 + MPMX19_03278 0.39 -1.4
624,310 + MPMX19_03278 0.39 -1.4
624,310 + MPMX19_03278 0.39 -1.0
624,310 + MPMX19_03278 0.39 +2.3
624,310 + MPMX19_03278 0.39 +1.1
624,311 - MPMX19_03278 0.39 -1.9
624,311 - MPMX19_03278 0.39 +0.1
624,682 + MPMX19_03278 0.74 +0.4
624,683 - MPMX19_03278 0.74 +0.7
624,787 + MPMX19_03278 0.84 -0.7
624,787 + MPMX19_03278 0.84 +1.0
624,787 + MPMX19_03278 0.84 -0.7
624,788 - MPMX19_03278 0.84 -1.2
625,235 + MPMX19_03279 0.21 -0.7
625,235 + MPMX19_03279 0.21 +0.3
625,235 + MPMX19_03279 0.21 -0.9
625,235 + MPMX19_03279 0.21 +0.1
625,236 - MPMX19_03279 0.21 -0.4
625,236 - MPMX19_03279 0.21 +0.1
625,236 - MPMX19_03279 0.21 -2.4
625,236 - MPMX19_03279 0.21 +0.7
625,310 + MPMX19_03279 0.27 -1.3
625,310 + MPMX19_03279 0.27 -1.1
625,478 + MPMX19_03279 0.40 +2.9
625,478 + MPMX19_03279 0.40 -0.2
625,479 - MPMX19_03279 0.40 +1.1
625,479 - MPMX19_03279 0.40 +1.1
625,479 - MPMX19_03279 0.40 +0.1
625,479 - MPMX19_03279 0.40 -0.7
625,479 - MPMX19_03279 0.40 -1.9
625,481 + MPMX19_03279 0.40 -0.6
625,481 + MPMX19_03279 0.40 -0.3
625,481 + MPMX19_03279 0.40 +2.1
625,481 + MPMX19_03279 0.40 -0.3
625,481 + MPMX19_03279 0.40 -0.4
625,481 + MPMX19_03279 0.40 +1.7
625,481 + MPMX19_03279 0.40 +0.1
625,481 + MPMX19_03279 0.40 +0.3
625,482 - MPMX19_03279 0.41 +2.4
625,482 - MPMX19_03279 0.41 -0.3
625,482 - MPMX19_03279 0.41 -1.7
625,482 - MPMX19_03279 0.41 -1.4
625,482 - MPMX19_03279 0.41 -1.2
625,517 - MPMX19_03279 0.43 +0.1
625,556 + MPMX19_03279 0.46 -0.7
625,556 + MPMX19_03279 0.46 -0.9
625,556 + MPMX19_03279 0.46 +0.7
625,556 + MPMX19_03279 0.46 +0.0
625,556 + MPMX19_03279 0.46 -1.2
625,557 - MPMX19_03279 0.47 +0.6
625,557 - MPMX19_03279 0.47 -0.9
625,557 - MPMX19_03279 0.47 -2.7
625,557 - MPMX19_03279 0.47 -0.5
625,557 - MPMX19_03279 0.47 +0.6
625,557 - MPMX19_03279 0.47 +0.1
625,557 - MPMX19_03279 0.47 -0.3
625,617 + MPMX19_03279 0.51 +0.1
625,617 + MPMX19_03279 0.51 +0.7
625,617 + MPMX19_03279 0.51 -1.2
625,617 + MPMX19_03279 0.51 -0.4
625,618 - MPMX19_03279 0.51 -1.1
625,618 - MPMX19_03279 0.51 -0.7
625,618 - MPMX19_03279 0.51 -0.3
625,835 + MPMX19_03279 0.69 -0.9
625,835 + MPMX19_03279 0.69 -0.8
625,835 + MPMX19_03279 0.69 +1.1
625,835 + MPMX19_03279 0.69 +0.3
625,836 - MPMX19_03279 0.69 -1.4
625,836 - MPMX19_03279 0.69 +1.7
625,836 - MPMX19_03279 0.69 -0.1
625,836 - MPMX19_03279 0.69 -2.2
625,836 - MPMX19_03279 0.69 -2.3
625,836 - MPMX19_03279 0.69 +0.3
625,913 + MPMX19_03279 0.75 -0.4
625,913 + MPMX19_03279 0.75 -1.4
625,913 + MPMX19_03279 0.75 -0.6
625,913 + MPMX19_03279 0.75 -0.1
625,913 + MPMX19_03279 0.75 +0.1
625,913 + MPMX19_03279 0.75 +0.9
625,913 + MPMX19_03279 0.75 -0.4
625,914 - MPMX19_03279 0.75 +0.6
625,914 - MPMX19_03279 0.75 +1.3
625,914 - MPMX19_03279 0.75 +0.1
625,914 - MPMX19_03279 0.75 +0.5
625,914 - MPMX19_03279 0.75 -1.0
625,914 - MPMX19_03279 0.75 +0.3
625,914 - MPMX19_03279 0.75 -1.8
625,914 - MPMX19_03279 0.75 -1.2
625,914 - MPMX19_03279 0.75 -0.1
625,914 - MPMX19_03279 0.75 +0.6
625,914 - MPMX19_03279 0.75 -2.0
625,914 - MPMX19_03279 0.75 +0.1
625,914 - MPMX19_03279 0.75 -1.0
625,914 - MPMX19_03279 0.75 -0.1
625,914 - MPMX19_03279 0.75 +0.0
625,914 - MPMX19_03279 0.75 -0.4
625,914 - MPMX19_03279 0.75 -0.6

Or see this region's nucleotide sequence