Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03061

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03059 and MPMX19_03060 are separated by 13 nucleotidesMPMX19_03060 and MPMX19_03061 overlap by 14 nucleotidesMPMX19_03061 and MPMX19_03062 are separated by 59 nucleotides MPMX19_03059: MPMX19_03059 - hypothetical protein, at 324,934 to 325,161 _03059 MPMX19_03060: MPMX19_03060 - Ferredoxin-type protein NapF, at 325,175 to 325,720 _03060 MPMX19_03061: MPMX19_03061 - Chaperone NapD, at 325,707 to 326,009 _03061 MPMX19_03062: MPMX19_03062 - Periplasmic nitrate reductase, at 326,069 to 328,561 _03062 Position (kb) 325 326 327Strain fitness (log2 ratio) -2 -1 0 1 2at 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.843 kb on + strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 324.844 kb on - strandat 325.100 kb on - strand, within MPMX19_03059at 325.191 kb on + strandat 325.191 kb on + strandat 325.191 kb on + strandat 325.192 kb on - strandat 325.192 kb on - strandat 325.206 kb on + strandat 325.207 kb on - strandat 325.290 kb on - strand, within MPMX19_03060at 325.723 kb on + strandat 325.723 kb on + strandat 325.723 kb on + strandat 325.724 kb on - strandat 326.324 kb on + strand, within MPMX19_03062at 326.324 kb on + strand, within MPMX19_03062at 326.324 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.346 kb on - strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.540 kb on + strand, within MPMX19_03062at 326.540 kb on + strand, within MPMX19_03062at 326.541 kb on - strand, within MPMX19_03062at 326.541 kb on - strand, within MPMX19_03062at 326.669 kb on + strand, within MPMX19_03062at 326.669 kb on + strand, within MPMX19_03062at 326.669 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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324,843 + -0.9
324,843 + -1.0
324,843 + -1.9
324,843 + +0.6
324,843 + -0.0
324,843 + -0.1
324,843 + -0.3
324,843 + -0.7
324,843 + -1.0
324,843 + -0.1
324,843 + +2.6
324,844 - -0.3
324,844 - -1.3
324,844 - -0.9
324,844 - -0.9
324,844 - -0.6
324,844 - +0.4
324,844 - +0.8
324,844 - -0.7
324,844 - +0.9
325,100 - MPMX19_03059 0.73 -1.4
325,191 + -1.3
325,191 + +0.8
325,191 + -0.4
325,192 - +1.0
325,192 - -0.8
325,206 + +0.7
325,207 - -1.3
325,290 - MPMX19_03060 0.21 -0.5
325,723 + -2.1
325,723 + +0.0
325,723 + +0.4
325,724 - +0.7
326,324 + MPMX19_03062 0.10 -0.0
326,324 + MPMX19_03062 0.10 +0.4
326,324 + MPMX19_03062 0.10 +1.0
326,345 + MPMX19_03062 0.11 -2.0
326,345 + MPMX19_03062 0.11 -1.0
326,345 + MPMX19_03062 0.11 +1.0
326,345 + MPMX19_03062 0.11 -1.3
326,346 - MPMX19_03062 0.11 +1.6
326,396 + MPMX19_03062 0.13 -1.8
326,396 + MPMX19_03062 0.13 +0.7
326,396 + MPMX19_03062 0.13 -1.0
326,396 + MPMX19_03062 0.13 -0.8
326,397 - MPMX19_03062 0.13 -1.4
326,397 - MPMX19_03062 0.13 -1.6
326,397 - MPMX19_03062 0.13 -1.0
326,397 - MPMX19_03062 0.13 +1.4
326,540 + MPMX19_03062 0.19 -0.7
326,540 + MPMX19_03062 0.19 +1.0
326,541 - MPMX19_03062 0.19 +0.4
326,541 - MPMX19_03062 0.19 +1.0
326,669 + MPMX19_03062 0.24 +0.2
326,669 + MPMX19_03062 0.24 -0.4
326,669 + MPMX19_03062 0.24 +1.0
326,879 + MPMX19_03062 0.32 -0.6
326,879 + MPMX19_03062 0.32 +0.0
326,879 + MPMX19_03062 0.32 -0.3
326,879 + MPMX19_03062 0.32 -0.3
326,879 + MPMX19_03062 0.32 -1.0
326,879 + MPMX19_03062 0.32 +0.6
326,879 + MPMX19_03062 0.32 -0.8
326,879 + MPMX19_03062 0.32 +0.8
326,880 - MPMX19_03062 0.33 +0.8
326,880 - MPMX19_03062 0.33 -0.7
326,880 - MPMX19_03062 0.33 -1.0
326,880 - MPMX19_03062 0.33 -0.1
326,880 - MPMX19_03062 0.33 -1.2

Or see this region's nucleotide sequence