Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02639 and MPMX19_02640 are separated by 51 nucleotides MPMX19_02640 and MPMX19_02641 are separated by 260 nucleotides MPMX19_02641 and MPMX19_02642 are separated by 118 nucleotides
MPMX19_02639: MPMX19_02639 - 3-dehydroquinate synthase, at 2,756,288 to 2,757,433
_02639
MPMX19_02640: MPMX19_02640 - Shikimate kinase, at 2,757,485 to 2,758,309
_02640
MPMX19_02641: MPMX19_02641 - hypothetical protein, at 2,758,570 to 2,758,710
_02641
MPMX19_02642: MPMX19_02642 - hypothetical protein, at 2,758,829 to 2,760,634
_02642
Position (kb)
2757
2758
2759 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2758.310 kb on - strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.427 kb on + strand at 2758.428 kb on - strand at 2758.428 kb on - strand at 2758.428 kb on - strand at 2758.472 kb on + strand at 2758.472 kb on + strand at 2758.472 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.521 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.749 kb on + strand at 2758.750 kb on - strand at 2758.750 kb on - strand at 2758.750 kb on - strand at 2758.750 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 2,758,310 - -1.3 2,758,427 + +0.7 2,758,427 + -0.1 2,758,427 + -0.6 2,758,427 + -1.3 2,758,427 + -0.0 2,758,427 + +0.3 2,758,427 + -0.1 2,758,427 + -0.1 2,758,427 + +0.7 2,758,427 + +0.1 2,758,428 - -0.3 2,758,428 - -0.4 2,758,428 - -0.3 2,758,472 + -1.7 2,758,472 + +0.4 2,758,472 + +0.1 2,758,521 + -0.6 2,758,521 + +0.4 2,758,521 + +2.3 2,758,521 + +0.3 2,758,521 + +0.1 2,758,521 + -0.4 2,758,521 + +0.1 2,758,521 + -1.3 2,758,521 + -0.9 2,758,521 + -0.9 2,758,521 + -0.3 2,758,521 + +0.8 2,758,521 + +0.7 2,758,521 + -1.6 2,758,521 + -1.6 2,758,521 + -0.8 2,758,521 + -1.3 2,758,521 + -0.3 2,758,521 + -0.3 2,758,521 + -3.2 2,758,521 + +1.3 2,758,521 + +1.0 2,758,521 + -0.9 2,758,521 + -0.8 2,758,521 + -0.5 2,758,521 + -0.1 2,758,521 + -1.3 2,758,749 + +1.7 2,758,749 + -1.2 2,758,749 + -1.3 2,758,749 + -0.4 2,758,749 + -0.9 2,758,749 + +0.8 2,758,749 + +0.6 2,758,749 + +0.4 2,758,750 - -1.6 2,758,750 - -0.0 2,758,750 - -1.3 2,758,750 - -0.3
Or see this region's nucleotide sequence