Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01708

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01706 and MPMX19_01707 overlap by 4 nucleotidesMPMX19_01707 and MPMX19_01708 are separated by 131 nucleotidesMPMX19_01708 and MPMX19_01709 are separated by 19 nucleotidesMPMX19_01709 and MPMX19_01710 are separated by 76 nucleotides MPMX19_01706: MPMX19_01706 - hypothetical protein, at 1,799,821 to 1,800,747 _01706 MPMX19_01707: MPMX19_01707 - Phosphatidylserine decarboxylase proenzyme, at 1,800,744 to 1,801,442 _01707 MPMX19_01708: MPMX19_01708 - hypothetical protein, at 1,801,574 to 1,802,044 _01708 MPMX19_01709: MPMX19_01709 - hypothetical protein, at 1,802,064 to 1,802,504 _01709 MPMX19_01710: MPMX19_01710 - Purine-binding protein, at 1,802,581 to 1,803,684 _01710 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -2 -1 0 1 2at 1801.459 kb on - strandat 1801.459 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.519 kb on - strandat 1801.519 kb on - strandat 1801.652 kb on - strand, within MPMX19_01708at 1801.652 kb on - strand, within MPMX19_01708at 1801.820 kb on + strand, within MPMX19_01708at 1801.820 kb on + strand, within MPMX19_01708at 1801.820 kb on + strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.043 kb on - strandat 1802.343 kb on + strand, within MPMX19_01709at 1802.470 kb on + strandat 1802.470 kb on + strandat 1802.470 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.485 kb on + strandat 1802.582 kb on + strandat 1802.582 kb on + strandat 1802.582 kb on + strandat 1802.582 kb on + strandat 1802.582 kb on + strandat 1802.582 kb on + strandat 1802.582 kb on + strandat 1802.582 kb on + strandat 1802.582 kb on + strandat 1802.582 kb on + strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.583 kb on - strandat 1802.615 kb on + strandat 1802.615 kb on + strandat 1802.615 kb on + strandat 1802.615 kb on + strandat 1802.615 kb on + strandat 1802.616 kb on - strandat 1802.616 kb on - strandat 1802.616 kb on - strandat 1802.616 kb on - strandat 1802.786 kb on + strand, within MPMX19_01710at 1802.786 kb on + strand, within MPMX19_01710at 1802.786 kb on + strand, within MPMX19_01710at 1802.786 kb on + strand, within MPMX19_01710at 1802.786 kb on + strand, within MPMX19_01710at 1802.786 kb on + strand, within MPMX19_01710at 1802.786 kb on + strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.787 kb on - strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.879 kb on + strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.880 kb on - strand, within MPMX19_01710at 1802.882 kb on + strand, within MPMX19_01710at 1802.882 kb on + strand, within MPMX19_01710at 1802.882 kb on + strand, within MPMX19_01710at 1802.883 kb on - strand, within MPMX19_01710at 1802.883 kb on - strand, within MPMX19_01710at 1802.883 kb on - strand, within MPMX19_01710at 1802.883 kb on - strand, within MPMX19_01710at 1803.009 kb on + strand, within MPMX19_01710at 1803.009 kb on + strand, within MPMX19_01710at 1803.009 kb on + strand, within MPMX19_01710at 1803.009 kb on + strand, within MPMX19_01710at 1803.009 kb on + strand, within MPMX19_01710at 1803.009 kb on + strand, within MPMX19_01710at 1803.010 kb on - strand, within MPMX19_01710at 1803.010 kb on - strand, within MPMX19_01710at 1803.010 kb on - strand, within MPMX19_01710

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,801,459 - -0.1
1,801,459 - -0.2
1,801,488 - -1.6
1,801,488 - -0.5
1,801,488 - -0.8
1,801,488 - +0.1
1,801,488 - -1.3
1,801,488 - -1.3
1,801,488 - -1.3
1,801,488 - -0.8
1,801,519 - +0.6
1,801,519 - -1.6
1,801,652 - MPMX19_01708 0.17 -0.3
1,801,652 - MPMX19_01708 0.17 -0.9
1,801,820 + MPMX19_01708 0.52 -0.9
1,801,820 + MPMX19_01708 0.52 -1.7
1,801,820 + MPMX19_01708 0.52 +0.2
1,801,821 - MPMX19_01708 0.52 -1.3
1,801,821 - MPMX19_01708 0.52 -2.3
1,801,821 - MPMX19_01708 0.52 -0.1
1,801,821 - MPMX19_01708 0.52 -0.5
1,801,821 - MPMX19_01708 0.52 -0.1
1,802,036 + -0.7
1,802,036 + +0.1
1,802,036 + -0.5
1,802,036 + -0.1
1,802,036 + -1.4
1,802,036 + +0.5
1,802,036 + -1.3
1,802,036 + -0.5
1,802,036 + -1.3
1,802,036 + +1.4
1,802,036 + -0.2
1,802,037 - -0.2
1,802,037 - -0.9
1,802,037 - -0.9
1,802,037 - -0.5
1,802,037 - +0.8
1,802,037 - +0.1
1,802,037 - -2.3
1,802,037 - +0.1
1,802,037 - -0.5
1,802,037 - -0.2
1,802,037 - -1.5
1,802,037 - -0.1
1,802,037 - -1.1
1,802,037 - -0.6
1,802,042 + -0.5
1,802,042 + -0.9
1,802,042 + +0.2
1,802,042 + -0.5
1,802,042 + +1.1
1,802,042 + +0.2
1,802,043 - -1.5
1,802,343 + MPMX19_01709 0.63 +0.8
1,802,470 + +0.1
1,802,470 + +0.1
1,802,470 + +0.1
1,802,485 + +0.6
1,802,485 + -0.7
1,802,485 + -0.2
1,802,485 + +0.1
1,802,485 + -2.5
1,802,485 + +0.7
1,802,485 + +0.4
1,802,485 + -0.5
1,802,485 + +0.3
1,802,485 + -1.5
1,802,485 + +0.1
1,802,485 + -0.9
1,802,485 + -1.1
1,802,582 + -0.1
1,802,582 + -1.7
1,802,582 + +0.7
1,802,582 + +1.1
1,802,582 + +1.4
1,802,582 + -0.7
1,802,582 + -0.1
1,802,582 + -1.3
1,802,582 + -0.2
1,802,582 + +1.1
1,802,583 - +1.5
1,802,583 - +0.9
1,802,583 - +0.1
1,802,583 - +1.1
1,802,583 - -1.3
1,802,583 - -1.5
1,802,583 - +0.1
1,802,583 - -0.2
1,802,583 - +0.3
1,802,583 - +0.2
1,802,583 - +0.1
1,802,583 - +1.1
1,802,615 + -1.5
1,802,615 + -0.5
1,802,615 + +0.1
1,802,615 + +2.1
1,802,615 + -0.9
1,802,616 - -0.5
1,802,616 - -0.3
1,802,616 - +1.1
1,802,616 - -0.2
1,802,786 + MPMX19_01710 0.19 -0.1
1,802,786 + MPMX19_01710 0.19 +0.7
1,802,786 + MPMX19_01710 0.19 -0.5
1,802,786 + MPMX19_01710 0.19 -0.7
1,802,786 + MPMX19_01710 0.19 -0.8
1,802,786 + MPMX19_01710 0.19 -0.6
1,802,786 + MPMX19_01710 0.19 -0.5
1,802,787 - MPMX19_01710 0.19 -1.7
1,802,787 - MPMX19_01710 0.19 -1.7
1,802,787 - MPMX19_01710 0.19 +0.8
1,802,787 - MPMX19_01710 0.19 +0.2
1,802,787 - MPMX19_01710 0.19 -0.3
1,802,787 - MPMX19_01710 0.19 +0.7
1,802,787 - MPMX19_01710 0.19 -0.2
1,802,787 - MPMX19_01710 0.19 +0.5
1,802,787 - MPMX19_01710 0.19 +0.1
1,802,787 - MPMX19_01710 0.19 +0.5
1,802,787 - MPMX19_01710 0.19 +0.1
1,802,787 - MPMX19_01710 0.19 +0.1
1,802,787 - MPMX19_01710 0.19 +0.1
1,802,787 - MPMX19_01710 0.19 -0.3
1,802,879 + MPMX19_01710 0.27 +0.5
1,802,879 + MPMX19_01710 0.27 -0.8
1,802,879 + MPMX19_01710 0.27 +0.7
1,802,879 + MPMX19_01710 0.27 -1.3
1,802,879 + MPMX19_01710 0.27 +1.1
1,802,879 + MPMX19_01710 0.27 -1.3
1,802,879 + MPMX19_01710 0.27 -0.7
1,802,879 + MPMX19_01710 0.27 +0.5
1,802,879 + MPMX19_01710 0.27 -0.9
1,802,879 + MPMX19_01710 0.27 -0.5
1,802,879 + MPMX19_01710 0.27 -0.1
1,802,879 + MPMX19_01710 0.27 -1.5
1,802,879 + MPMX19_01710 0.27 -1.3
1,802,879 + MPMX19_01710 0.27 +0.4
1,802,879 + MPMX19_01710 0.27 +0.7
1,802,879 + MPMX19_01710 0.27 +0.5
1,802,879 + MPMX19_01710 0.27 -0.6
1,802,879 + MPMX19_01710 0.27 -1.5
1,802,879 + MPMX19_01710 0.27 -0.3
1,802,879 + MPMX19_01710 0.27 -1.5
1,802,879 + MPMX19_01710 0.27 -0.6
1,802,879 + MPMX19_01710 0.27 -0.4
1,802,879 + MPMX19_01710 0.27 -1.3
1,802,879 + MPMX19_01710 0.27 +0.1
1,802,879 + MPMX19_01710 0.27 -0.3
1,802,879 + MPMX19_01710 0.27 -0.4
1,802,879 + MPMX19_01710 0.27 +2.1
1,802,880 - MPMX19_01710 0.27 -2.5
1,802,880 - MPMX19_01710 0.27 -0.7
1,802,880 - MPMX19_01710 0.27 +0.1
1,802,880 - MPMX19_01710 0.27 +0.1
1,802,880 - MPMX19_01710 0.27 +1.7
1,802,880 - MPMX19_01710 0.27 +0.8
1,802,880 - MPMX19_01710 0.27 +0.1
1,802,880 - MPMX19_01710 0.27 -0.5
1,802,880 - MPMX19_01710 0.27 -0.2
1,802,880 - MPMX19_01710 0.27 -1.3
1,802,880 - MPMX19_01710 0.27 -0.8
1,802,880 - MPMX19_01710 0.27 -0.3
1,802,880 - MPMX19_01710 0.27 +0.1
1,802,880 - MPMX19_01710 0.27 +0.5
1,802,880 - MPMX19_01710 0.27 +0.1
1,802,880 - MPMX19_01710 0.27 -2.1
1,802,880 - MPMX19_01710 0.27 -0.3
1,802,880 - MPMX19_01710 0.27 +1.2
1,802,880 - MPMX19_01710 0.27 -1.5
1,802,880 - MPMX19_01710 0.27 -0.6
1,802,880 - MPMX19_01710 0.27 -1.3
1,802,880 - MPMX19_01710 0.27 -0.1
1,802,880 - MPMX19_01710 0.27 -0.9
1,802,880 - MPMX19_01710 0.27 +0.7
1,802,880 - MPMX19_01710 0.27 -0.9
1,802,880 - MPMX19_01710 0.27 -0.5
1,802,880 - MPMX19_01710 0.27 -0.5
1,802,880 - MPMX19_01710 0.27 -0.6
1,802,880 - MPMX19_01710 0.27 -0.3
1,802,880 - MPMX19_01710 0.27 -0.3
1,802,880 - MPMX19_01710 0.27 +0.1
1,802,880 - MPMX19_01710 0.27 -0.2
1,802,880 - MPMX19_01710 0.27 -0.8
1,802,880 - MPMX19_01710 0.27 +0.9
1,802,880 - MPMX19_01710 0.27 +0.6
1,802,880 - MPMX19_01710 0.27 -1.3
1,802,880 - MPMX19_01710 0.27 +0.1
1,802,880 - MPMX19_01710 0.27 -1.7
1,802,880 - MPMX19_01710 0.27 -0.5
1,802,880 - MPMX19_01710 0.27 +0.1
1,802,880 - MPMX19_01710 0.27 +0.1
1,802,880 - MPMX19_01710 0.27 +0.5
1,802,880 - MPMX19_01710 0.27 -0.3
1,802,882 + MPMX19_01710 0.27 +0.2
1,802,882 + MPMX19_01710 0.27 -0.9
1,802,882 + MPMX19_01710 0.27 -0.4
1,802,883 - MPMX19_01710 0.27 +1.1
1,802,883 - MPMX19_01710 0.27 -0.1
1,802,883 - MPMX19_01710 0.27 +0.3
1,802,883 - MPMX19_01710 0.27 +0.2
1,803,009 + MPMX19_01710 0.39 -1.3
1,803,009 + MPMX19_01710 0.39 +0.4
1,803,009 + MPMX19_01710 0.39 +0.3
1,803,009 + MPMX19_01710 0.39 -1.3
1,803,009 + MPMX19_01710 0.39 -0.4
1,803,009 + MPMX19_01710 0.39 +0.5
1,803,010 - MPMX19_01710 0.39 +0.6
1,803,010 - MPMX19_01710 0.39 -0.5
1,803,010 - MPMX19_01710 0.39 -0.2

Or see this region's nucleotide sequence